Rw3G002580

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000149
Physical Location & Seq
Forward (+)
2269837 .. 2271810
1974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002580.1

Sequence Viewer

Length: 861 bp
ATGGGACTTAATGGAATCTATAATGTGCCAGTTTCTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGGAATAACATTCTTCGATACATCAGATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAAGGTTCAGGTGGCTACAAAGTTTGGAATTGTAAAGGCTGAGCCTGAGAAACGGCTTTATGTGGACTACATTGATCTTTACTATCAGCACCGGATTAATGCATCAGTCCCCATAGAGGATACTATGGAGGAACTAAAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTAGATTATCTGAAGCTAGCCCAGACACAATAAGAAGGGCACATGCAGTTCATCCTATCGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAAGAAATCGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATACAGCCCTCTTGGTCAAGGATTTTTTGGTGGCAGGGCAGCTGTGGAAGCTATACCATCAAGTAGTATTGTGACAACTTGGAGAAAAAATAAAGACATCTATGCTAGAACACAAAAGTTGGCTGAAAAACATGGGTGCTCCCCTGCACAACTAGCCCTTGCTTGGGTTCTTAGTCAAGGTGATGGTGTTGTACCTATCCCTGGAACAACTAAGATAAACAATCTTGATGAAAATATCGGTTCCTTGGGAGTGAAACTAACTGAAGAAGATATGAAAGAGATTTCCATTATGATACCTACCAATATCATGGCAGGGAATAATGCACCGCATATTTTCATCCGCTGCTCATGGAAATTTGCAAACACACCAGCAGCAAAAAATAGCAGAATACCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

286

Amino Acids

31.78

Weight (kDa)

6.61

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 8 - 49 2.3e-07 Aldo/keto reductase family
Aldo_ket_red PF00248 64 - 249 1.8e-51 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 788, 802
AcsI RAATTY 1 cut(s) 815
AcuI CTGAAG 3 cut(s) 57, 342, 744
AfaI GTAC 3 cut(s) 65, 308, 654
AfiI CCNNNNNNNGG 4 cut(s) 256, 624, 625, 662
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 4 cut(s) 283, 326, 503, 512
AluI AGCT 4 cut(s) 283, 326, 503, 512
Alw21I GWGCWC 1 cut(s) 602
Alw26I GTCTC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 35
ApeKI GCWGC 4 cut(s) 371, 500, 804, 833
ApoI RAATTY 1 cut(s) 815
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 298, 653
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 602
BbvI GCAGC 4 cut(s) 358, 512, 791, 845
BccI CCATC 2 cut(s) 526, 638
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 663
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 3 cut(s) 327, 567, 614
BfmI CTRYAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 4 cut(s) 372, 501, 805, 834
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 4 cut(s) 373, 502, 806, 835
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 703
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 1 cut(s) 251
BmtI GCTAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 661, 705
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 624, 625, 662
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 661, 705
BseGI GGATG 2 cut(s) 361, 798
BseLI CCNNNNNNNGG 4 cut(s) 256, 624, 625, 662
BseMII CTCAG 2 cut(s) 171, 177
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 4 cut(s) 358, 512, 791, 845
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 602
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 3 cut(s) 18, 233, 410
BslI CCNNNNNNNGG 4 cut(s) 256, 624, 625, 662
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 3 cut(s) 18, 233, 410
Bso31I GGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 352, 602
Bsp143I GATC 3 cut(s) 57, 135, 214
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp68I TCGCGA 1 cut(s) 405
BspACI CCGC 2 cut(s) 788, 802
BspCNI CTCAG 2 cut(s) 172, 178
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 703
BspMAI CTGCAG 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 396
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 661, 705
BssMI GATC 3 cut(s) 57, 135, 214
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 1 cut(s) 663
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 4 cut(s) 180, 186, 632, 672
BstF5I GGATG 2 cut(s) 361, 798
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 3 cut(s) 60, 138, 217
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 3 cut(s) 57, 135, 214
BstMWI GCNNNNNNNGC 2 cut(s) 509, 614
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 2 cut(s) 122, 356
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 358, 512, 791, 845
BstXI CCANNNNNNTGG 1 cut(s) 769
BsuI GTATCC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 361, 798
BtuMI TCGCGA 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 64, 307, 653
CspCI CAANNNNNGTGG 2 cut(s) 368, 403
CviAII CATG 5 cut(s) 119, 353, 593, 769, 810
CviQI GTAC 3 cut(s) 64, 307, 653
DdeI CTNAG 4 cut(s) 180, 186, 632, 672
DpnI GATC 3 cut(s) 59, 137, 216
DpnII GATC 3 cut(s) 57, 135, 214
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 3 cut(s) 57, 342, 744
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 705
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 5 cut(s) 122, 356, 596, 772, 813
FaqI GGGAC 3 cut(s) 18, 233, 410
FatI CATG 5 cut(s) 118, 352, 592, 768, 809
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 372, 501, 805, 834
FokI GGATG 2 cut(s) 348, 785
Fsp4HI GCNGC 4 cut(s) 372, 501, 805, 834
FspBI CTAG 3 cut(s) 327, 567, 614
GluI GCNGC 4 cut(s) 372, 501, 805, 834
HapII CCGG 1 cut(s) 232
Hin1II CATG 5 cut(s) 122, 356, 596, 772, 813
HinfI GANTC 3 cut(s) 15, 400, 447
HpaII CCGG 1 cut(s) 232
HphI GGTGA 2 cut(s) 298, 653
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 37, 103, 140, 322
Hpy188III TCNNGA 3 cut(s) 404, 451, 686
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 7 cut(s) 242, 356, 374, 435, 608, 785, 821
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 614
HpyF3I CTNAG 4 cut(s) 180, 186, 632, 672
Hsp92II CATG 5 cut(s) 122, 356, 596, 772, 813
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 135, 214
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 4 cut(s) 358, 512, 791, 845
LweI GCATC 1 cut(s) 251
MaeI CTAG 3 cut(s) 327, 567, 614
MaeIII GTNAC 1 cut(s) 532
MalI GATC 3 cut(s) 59, 137, 216
MboI GATC 3 cut(s) 57, 135, 214
MboII GAAGA 5 cut(s) 50, 82, 428, 737, 740
MhlI GDGCHC 2 cut(s) 352, 602
MluCI AATT 2 cut(s) 168, 815
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 6 cut(s) 71, 250, 262, 286, 406, 480
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 3 cut(s) 9, 237, 859
MslI CAYNNNNRTG 2 cut(s) 53, 123
MspA1I CMGCKG 2 cut(s) 503, 804
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 509, 614
NdeII GATC 3 cut(s) 57, 135, 214
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 5 cut(s) 122, 356, 596, 772, 813
NlaIV GGNNCC 1 cut(s) 703
NmuCI GTSAC 1 cut(s) 532
NruI TCGCGA 1 cut(s) 405
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 2 cut(s) 122, 356
PfeI GAWTC 2 cut(s) 15, 447
PkrI GCNGC 4 cut(s) 373, 502, 806, 835
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PshBI ATTAAT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 1 cut(s) 703
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 503
RruI TCGCGA 1 cut(s) 405
RsaI GTAC 3 cut(s) 65, 308, 654
RsaNI GTAC 3 cut(s) 64, 307, 653
RseI CAYNNNNRTG 2 cut(s) 53, 123
SaqAI TTAA 3 cut(s) 9, 237, 859
SatI GCNGC 4 cut(s) 372, 501, 805, 834
Sau3AI GATC 3 cut(s) 57, 135, 214
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 2 cut(s) 352, 602
SetI ASST 9 cut(s) 147, 153, 285, 328, 505, 514, 643, 658, 760
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 53, 123
Sse9I AATT 2 cut(s) 168, 815
SsiI CCGC 2 cut(s) 788, 802
SspMI CTAG 3 cut(s) 327, 567, 614
StyD4I CCNGG 1 cut(s) 661
StyI CCWWGG 1 cut(s) 705
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 168, 815
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 2 cut(s) 15, 447
Tru1I TTAA 3 cut(s) 9, 237, 859
Tru9I TTAA 3 cut(s) 9, 237, 859
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 4 cut(s) 371, 500, 804, 833
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 5 cut(s) 141, 350, 705, 749, 787
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 815
XceI RCATGY 2 cut(s) 122, 356
XspI CTAG 3 cut(s) 327, 567, 614
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.