RchiOBHm_Chr3g0451211

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000149
Physical Location & Seq
Forward (+)
2393531 .. 2394913
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41850

Sequence Viewer

Length: 438 bp
ATGGAGGAACTAAAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTAGATTATCTGAAGCTAGCCCAGACACAATAAGAAGGGCACATGCAGTTCATCCTATCGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAAGAAATCGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATACAGCCCTCTTGGTCAAGGATTTCTCGGTGGCAGGGCAGCTGTGGAAGCTATACCATCAAGTAGTATTGTGGGATGGCTTCCTCGCATTCAAGGAGACAACTTGGAGAAAAATAAAGACATCTATGCTAGAACACAAAAGTTGGCTGAAAAACATGGGTGCTCCCCTGCACAACTAACCCTTGCTTGGGTTCTTAGTCAAGGTGATGGTGTTGTACCTATCCCTGGAACGTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

145

Amino Acids

15.98

Weight (kDa)

6.83

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 143 8e-33 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 3 cut(s) 44, 414, 431
AfiI CCNNNNNNNGG 3 cut(s) 384, 385, 422
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 4 cut(s) 19, 62, 239, 248
AluI AGCT 4 cut(s) 19, 62, 239, 248
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 132, 288
ApeKI GCWGC 2 cut(s) 107, 236
AsuHPI GGTGA 2 cut(s) 34, 413
AsuNHI GCTAGC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 94, 248
BccI CCATC 3 cut(s) 262, 267, 398
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 132, 288
BfaI CTAG 2 cut(s) 63, 327
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 108, 237
BlsI GCNGC 2 cut(s) 109, 238
Bme1390I CCNGG 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 423
BmtI GCTAGC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 421
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 385, 422
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 97, 278
BseLI CCNNNNNNNGG 3 cut(s) 384, 385, 422
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 94, 248
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 362
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 384, 385, 422
BsmAI GTCTC 2 cut(s) 132, 288
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 88, 362
Bsp68I TCGCGA 1 cut(s) 141
BspFNI CGCG 1 cut(s) 141
BspMAI CTGCAG 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 392
BstF5I GGATG 2 cut(s) 97, 278
BstFNI CGCG 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 132, 288
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 94, 248
BtsCI GGATG 2 cut(s) 97, 278
BtuMI TCGCGA 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 64
Csp6I GTAC 3 cut(s) 43, 413, 430
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 2 cut(s) 89, 353
CviJI RGCY 8 cut(s) 19, 62, 66, 204, 239, 248, 277, 344
CviKI_1 RGCY 8 cut(s) 19, 62, 66, 204, 239, 248, 277, 344
CviQI GTAC 3 cut(s) 43, 413, 430
DdeI CTNAG 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 421
FaeI CATG 2 cut(s) 92, 356
FaiI YATR 5 cut(s) 90, 199, 251, 324, 354
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 88, 352
Fnu4HI GCNGC 2 cut(s) 108, 237
FokI GGATG 2 cut(s) 84, 285
Fsp4HI GCNGC 2 cut(s) 108, 237
FspBI CTAG 2 cut(s) 63, 327
GluI GCNGC 2 cut(s) 108, 237
Hin1II CATG 2 cut(s) 92, 356
HinfI GANTC 2 cut(s) 136, 183
HphI GGTGA 2 cut(s) 34, 413
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 140, 187
HpyAV CCTTC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 4 cut(s) 92, 110, 171, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 2 cut(s) 92, 356
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 6 cut(s) 5, 81, 157, 217, 378, 408
Lsp1109I GCAGC 2 cut(s) 94, 248
MaeI CTAG 2 cut(s) 63, 327
MaeII ACGT 1 cut(s) 428
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 88, 362
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 4 cut(s) 22, 142, 216, 291
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 245
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 92, 356
NruI TCGCGA 1 cut(s) 141
NspI RCATGY 1 cut(s) 92
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 109, 238
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PstI CTGCAG 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 239
RruI TCGCGA 1 cut(s) 141
RsaI GTAC 3 cut(s) 44, 414, 431
RsaNI GTAC 3 cut(s) 43, 413, 430
SatI GCNGC 2 cut(s) 108, 237
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 2 cut(s) 88, 362
SetI ASST 7 cut(s) 21, 64, 241, 250, 403, 418, 431
SfcI CTRYAG 1 cut(s) 108
SspMI CTAG 2 cut(s) 63, 327
StyD4I CCNGG 1 cut(s) 421
TaiI ACGT 1 cut(s) 431
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 183
TseI GCWGC 2 cut(s) 107, 236
TspDTI ATGAA 1 cut(s) 86
XceI RCATGY 1 cut(s) 92
XspI CTAG 2 cut(s) 63, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.