Rroxscaffold_5G00334440

Perakine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
1734092 .. 1736572
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334440.1

Sequence Viewer

Length: 561 bp
ATGAGAGCTCATGCTGTTCATCCCATTACTGCAGTGCAAATGGAGTATTCTCGTTGGACTCGTGAAATCGAAAATGAGATAATTCCACTTTGCAGGAAACTTGGAATTGGGATAGTGTCATATAGTCCACTTGGTCGTGGCTTCTTCGGTGGGAAGGCAATTTTAGAGAGCTTGCCTGCCGAAAGTTTGTTGTCTATTCATCCAAGGTTCAATGGTGAGAATTTGGAGAACAACAAACTTTTCTATAACAAACTTGCCAACCTTGCCACAAAACATTCATGCACTGCTCCTCAGCTAGCTCTGGCATGGCTTCTCCATCAGGGCAATGACATAGTTCCAATCCGAGGAACTACTAAAGTTAAGAACCTTTGTATCAATATTGGAGCATTGAATGTGAAGCTTACGAAAGAGGATTTGACTGAGATTTGTGATGCTGTTCCCATTAATGAAGTTGAAGGCGACCGAGAATTTGAAGTTCTGTCAAAATTCATCTGGAATAAGGCGAATACCCCATCAAAGTTATTGCAAGGGTGCTGTCAGTTTCTTTGTGTACTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

20.73

Weight (kDa)

8.16

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 3 - 142 3.3e-23 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 220, 467, 485
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 4 cut(s) 211, 391, 455, 473
AluBI AGCT 5 cut(s) 8, 171, 295, 299, 400
AluI AGCT 5 cut(s) 8, 171, 295, 299, 400
Alw21I GWGCWC 1 cut(s) 10
ApoI RAATTY 3 cut(s) 220, 467, 485
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AseI ATTAAT 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 227
AsuNHI GCTAGC 1 cut(s) 295
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BanII GRGCYC 1 cut(s) 10
BauI CACGAG 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 291
BccI CCATC 2 cut(s) 324, 520
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 30
BmsI GCATC 1 cut(s) 421
BmtI GCTAGC 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 203, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 203, 343
BseGI GGATG 2 cut(s) 19, 199
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 3 cut(s) 305, 411, 545
BseRI GAGGAG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 10
BspCNI CTCAG 3 cut(s) 304, 412, 546
BspMAI CTGCAG 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 203, 343
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 173, 177, 297
BstDEI CTNAG 3 cut(s) 291, 420, 554
BstF5I GGATG 2 cut(s) 19, 199
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 19, 199
BtsI GCAGTG 2 cut(s) 39, 282
BtsIMutI CAGTG 2 cut(s) 39, 282
Cac8I GCNNGC 3 cut(s) 173, 177, 297
Csp6I GTAC 1 cut(s) 551
CviAII CATG 3 cut(s) 11, 279, 306
CviJI RGCY 7 cut(s) 8, 141, 171, 295, 299, 310, 400
CviKI_1 RGCY 7 cut(s) 8, 141, 171, 295, 299, 310, 400
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 3 cut(s) 291, 420, 554
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 14, 282, 309
FaiI YATR 7 cut(s) 12, 121, 123, 246, 280, 307, 332
FatI CATG 3 cut(s) 10, 278, 305
FokI GGATG 2 cut(s) 6, 186
FriOI GRGCYC 1 cut(s) 10
FspBI CTAG 1 cut(s) 296
Hin1II CATG 3 cut(s) 14, 282, 309
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 1 cut(s) 58
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 128, 551
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 62, 493
Hpy8I GTNNAC 2 cut(s) 128, 551
HpyAV CCTTC 2 cut(s) 148, 449
HpyCH4V TGCA 5 cut(s) 32, 37, 93, 282, 526
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 291, 420, 554
Hsp92II CATG 3 cut(s) 14, 282, 309
LmnI GCTCC 2 cut(s) 292, 383
LpnPI CCDG 5 cut(s) 79, 189, 287, 305, 478
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 296
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 6 cut(s) 81, 105, 159, 220, 467, 485
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 3 cut(s) 300, 338, 403
MseI TTAA 3 cut(s) 360, 444, 559
MwoI GCNNNNNNNGC 1 cut(s) 263
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 3 cut(s) 14, 282, 309
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 10
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 360, 444, 559
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 10
SetI ASST 8 cut(s) 10, 173, 209, 264, 297, 301, 369, 402
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 6 cut(s) 81, 105, 159, 220, 467, 485
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 10
StyI CCWWGG 1 cut(s) 203
TaqI TCGA 1 cut(s) 69
TaqII GACCGA 1 cut(s) 477
TasI AATT 6 cut(s) 81, 105, 159, 220, 467, 485
TatI WGTACW 1 cut(s) 550
Tru1I TTAA 3 cut(s) 360, 444, 559
Tru9I TTAA 3 cut(s) 360, 444, 559
TscAI CASTG 2 cut(s) 39, 289
TspDTI ATGAA 5 cut(s) 8, 188, 267, 462, 478
TspRI CASTG 2 cut(s) 39, 289
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 3 cut(s) 220, 467, 485
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.