Rroxscaffold_5G00334450

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
1737640 .. 1739373
1734 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00334450.1

Sequence Viewer

Length: 192 bp
ATGGCCGAATTAAACCTGGGTATACTTATAGATGTTGTGGATGAAGAATGGATGAAAGACACTCTTCCAGATGACGATCTTCCCCTGCCGCCAATGCTGGTTATAAGGACTGATGACACTGAGGATTCAAATCAGGAGACTCGAAAAGTTGAGGGAGATAGTTGGCATGATCTTGCATTAGGTTCTCAATAA

Protein Analysis

63

Amino Acids

7.14

Weight (kDa)

4.05

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 3
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BsaBI GATNNNNATC 2 cut(s) 75, 129
BsaJI CCNNGG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 75, 129
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 46, 57
BseJI GATNNNNATC 2 cut(s) 75, 129
BseMII CTCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 76, 169
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 76, 169
BssNAI GTATAC 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 2 cut(s) 46, 57
BstKTI GATC 2 cut(s) 79, 172
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 76, 169
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 46, 57
BtsIMutI CAGTG 1 cut(s) 117
CviAII CATG 1 cut(s) 167
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 78, 171
DpnII GATC 2 cut(s) 76, 169
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 23, 29, 104, 168
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 1 cut(s) 166
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 2 cut(s) 53, 64
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 170
HinfI GANTC 2 cut(s) 125, 139
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 68, 134
Hpy8I GTNNAC 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 2 cut(s) 76, 169
LpnPI CCDG 6 cut(s) 2, 29, 81, 83, 98, 119
MalI GATC 2 cut(s) 78, 171
MboI GATC 2 cut(s) 76, 169
MboII GAAGA 3 cut(s) 56, 56, 71
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 115, 145
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 76, 169
NlaIII CATG 1 cut(s) 170
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 76, 169
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 17
SetI ASST 2 cut(s) 18, 184
SgeI CNNG 9 cut(s) 28, 29, 80, 97, 110, 146, 153, 179, 185
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 15
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 57, 68
TspRI CASTG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.