Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002509.1

Orthogroup ID

OG0006541

Physical Location & Seq

Genomic Coordinates Reverse (-)

162649 .. 164114

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002509.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggccgaattaaacctgggtatacttatagatgttgtggatgaagaatggatgaaagacactcttccagatgacgatcttcccctgccgccaatgctggttataaggactgatgacaccgaggattcgaatcaggaggctcgaaaagttgagggagatagttggcatgatcttgcattaggtaaaaggttgatgaaatgccaaactgattttgataagcggaaagtgctaaaggagaagcttagtgacattatgcgtctcccacatacgtactcagcagcaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010229 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0021700 GO:0022414 GO:0031461 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0061614 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04114 ko04120 ko04914 map04110 map04114 map04120 map04914

Pfam Domains

Protein Families

Apc13p

Protein Analysis

95

Amino Acids

10.94

Weight (kDa)

4.6

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73177
fragaria_vesca	FvH4_4g00490
malus_domestica	MD09G1239400.v1.1
prunus_persica	Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385941 RchiOBHm_Chr4g0387841 RchiOBHm_Chr4g0387941
rosa_multiflora	Rmu_sc0002509.1_g000032
rosa_roxburghii	Rroxscaffold_5G00334450 Rroxscaffold_5G00334490
rosa_rugosa	Rorug03G0303500 Rorug03G0303600 Rorug03G0313700 Rorug03G0313800 Rorug03G0313900 Rorug03G0314000
rosa_samantha	Rh4AG007700 Rh4AG019000 Rh4BG005700 Rh4CG008500 Rh4DG007200
rosa_wichuraiana	Rw4G000290 Rw4G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	2 cut(s)	89, 220
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	89, 279
BlsI	GCNGC	2 cut(s)	90, 280
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	270
BsaBI	GATNNNNATC	2 cut(s)	75, 129
BsaJI	CCNNGG	2 cut(s)	16, 120
Bse8I	GATNNNNATC	2 cut(s)	75, 129
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	16, 120
BseGI	GGATG	2 cut(s)	46, 57
BseJI	GATNNNNATC	2 cut(s)	75, 129
BseMII	CTCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	263
BsmBI	CGTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	76, 169
BspACI	CCGC	2 cut(s)	89, 220
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	16, 120
BssMI	GATC	2 cut(s)	76, 169
BssNAI	GTATAC	1 cut(s)	23
Bst1107I	GTATAC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	242, 274
BstF5I	GGATG	2 cut(s)	46, 57
BstKTI	GATC	2 cut(s)	79, 172
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	2 cut(s)	76, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 226
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSNI	TACGTA	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	46, 57
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	3 cut(s)	5, 140, 241
CviKI_1	RGCY	3 cut(s)	5, 140, 241
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	242, 274
DpnI	GATC	2 cut(s)	78, 171
DpnII	GATC	2 cut(s)	76, 169
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco105I	TACGTA	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	1 cut(s)	170
FaiI	YATR	7 cut(s)	23, 29, 104, 168, 254, 267, 286
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	89, 279
FokI	GGATG	2 cut(s)	53, 64
Fsp4HI	GCNGC	2 cut(s)	89, 279
GluI	GCNGC	2 cut(s)	89, 279
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	125, 130
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188III	TCNNGA	2 cut(s)	68, 134
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 226
HpyF3I	CTNAG	2 cut(s)	242, 274
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	76, 169
LpnPI	CCDG	6 cut(s)	2, 29, 81, 83, 98, 119
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	78, 171
MboI	GATC	2 cut(s)	76, 169
MboII	GAAGA	3 cut(s)	56, 56, 71
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	3 cut(s)	115, 130, 145
MseI	TTAA	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	94, 226
NdeII	GATC	2 cut(s)	76, 169
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	125, 130
PkrI	GCNGC	2 cut(s)	90, 280
Ppu21I	YACGTR	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	2 cut(s)	89, 279
Sau3AI	GATC	2 cut(s)	76, 169
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	5 cut(s)	18, 184, 191, 243, 272
SfuI	TTCGAA	1 cut(s)	128
SnaBI	TACGTA	1 cut(s)	270
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	2 cut(s)	89, 220
StyD4I	CCNGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	128, 142
TasI	AATT	1 cut(s)	8
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	125, 130
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	57, 68, 209
XmiI	GTMKAC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.