Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006541

Physical Location & Seq

Genomic Coordinates Forward (+)

33660835 .. 33664038

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTGGGAGACAAGAGGGTTGAGCTTCATGAGGAGAGCGAGGGGCTGGCCGATGGGGGACGGACTCCAAGGAGTAGGCGCGGCGGGCGACGCGGTGGATGTCAGAGTAATTGGACTAATGACTTTTGGACCTGGGCATTCTGTGGATAAATTGTCAAAGGTGTTGCTGCATGAAAAACGTTCACATATGTTAGGCAAATGCGACAAGCTTGGGAATTGGACACAAATAGGAAGCTCCTTGATGAATCTCAGGGCCTCAGAGTACAGTGCACTGCGAGCATCTGCTGTGAAAATGCATGGCCTTTTTGAAAGGCTTCGGAGCTATGTTAATGCCCAGGGAATGACTGGTTTTGTTGAGTCTTTGCACAGTTTAGCACAATCTCTGGGAAAATACAGACCCCAATCTTCAACATGTCAAGGTCCATTGGCAGCTACACCAAAGACTGGAAACTCTAAGTTACAAGCATGGTTAATGCAATGTGGACGCGTTTATGTTTTCCGTCTTTATGAAGTTATAGCCACTTGGGCAATGGTCTGTCAACTGAAATTACTTTGCACAACAGTTAAGTTGCCAATTGCTGTTGTTCTTCGTGGTATTCAGACAACAGACAATATAGTAGTCGCTGTTGTAGTAAACTTTATCAGACGACAGTTTTTTGGTATTATTGCTGTTGTTCTTCGTGACGGCATTGAGATAGACAACAACAAACTCTATAATCAGACGACAGTGAAAAACTGTCGTCTGATTGAAAAATTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010229 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0021700 GO:0022414 GO:0031461 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0061614 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04114 ko04120 ko04914 map04110 map04114 map04120 map04914

Pfam Domains

Protein Families

Apc13p

Protein Analysis

253

Amino Acids

28.06

Weight (kDa)

9.95

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73177
fragaria_vesca	FvH4_4g00490
malus_domestica	MD09G1239400.v1.1
prunus_persica	Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385941 RchiOBHm_Chr4g0387841 RchiOBHm_Chr4g0387941
rosa_multiflora	Rmu_sc0002509.1_g000032
rosa_roxburghii	Rroxscaffold_5G00334450 Rroxscaffold_5G00334490
rosa_rugosa	Rorug03G0303500 Rorug03G0303600 Rorug03G0313700 Rorug03G0313800 Rorug03G0313900 Rorug03G0314000
rosa_samantha	Rh4AG007700 Rh4AG019000 Rh4BG005700 Rh4CG008500 Rh4DG007200
rosa_wichuraiana	Rw4G000290 Rw4G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	3 cut(s)	80, 92, 486
AciI	CCGC	3 cut(s)	80, 83, 92
AclI	AACGTT	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	47
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	2 cut(s)	410, 484
AgsI	TTSAA	3 cut(s)	308, 408, 749
AjnI	CCWGG	2 cut(s)	130, 333
AluBI	AGCT	5 cut(s)	24, 208, 234, 321, 431
AluI	AGCT	5 cut(s)	24, 208, 234, 321, 431
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	2
Alw44I	GTGCAC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	47, 252, 298
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	166, 428
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	3 cut(s)	128, 252, 419
AvaII	GGWCC	2 cut(s)	128, 419
BaeGI	GKGCMC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	153, 440
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	700
BciT130I	CCWGG	2 cut(s)	132, 335
BcoDI	GTCTC	1 cut(s)	2
BglI	GCCNNNNNGGC	1 cut(s)	524
BisI	GCNGC	3 cut(s)	81, 167, 429
BlsI	GCNGC	3 cut(s)	82, 168, 430
Bme1390I	CCNGG	2 cut(s)	132, 335
Bme18I	GGWCC	2 cut(s)	128, 419
BmgT120I	GGNCC	3 cut(s)	128, 252, 419
BmrFI	CCNGG	2 cut(s)	132, 335
BmsI	GCATC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	67, 131, 333, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	349, 448
Bse3DI	GCAATG	2 cut(s)	482, 534
BseBI	CCWGG	2 cut(s)	132, 335
BseDI	CCNNGG	4 cut(s)	67, 131, 333, 334
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	2 cut(s)	482, 534
BseMII	CTCAG	2 cut(s)	262, 270
BseNI	ACTGG	2 cut(s)	349, 448
BseRI	GAGGAG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	153, 440
Bsh1236I	CGCG	3 cut(s)	80, 92, 486
BshFI	GGCC	3 cut(s)	49, 254, 300
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	49, 254, 300
Bsp1286I	GDGCHC	1 cut(s)	271
BspACI	CCGC	3 cut(s)	80, 83, 92
BspANI	GGCC	3 cut(s)	49, 254, 300
BspCNI	CTCAG	2 cut(s)	261, 269
BspFNI	CGCG	3 cut(s)	80, 92, 486
BspHI	TCATGA	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	482, 534
BsrI	ACTGG	2 cut(s)	349, 448
BssECI	CCNNGG	4 cut(s)	67, 131, 333, 334
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	132, 335
Bst4CI	ACNGT	6 cut(s)	266, 368, 562, 651, 727, 737
BstC8I	GCNNGC	3 cut(s)	47, 85, 276
BstDEI	CTNAG	3 cut(s)	248, 256, 453
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	3 cut(s)	80, 92, 486
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	2
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 89, 275, 524
BstNI	CCWGG	2 cut(s)	132, 335
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	130, 333
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	3 cut(s)	80, 92, 486
BstV1I	GCAGC	2 cut(s)	153, 440
BsuRI	GGCC	3 cut(s)	49, 254, 300
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	3 cut(s)	269, 271, 732
Cac8I	GCNNGC	3 cut(s)	47, 85, 276
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	128, 252, 419
CseI	GACGC	2 cut(s)	98, 492
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	5 cut(s)	28, 170, 296, 411, 465
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	248, 256, 453
EaeI	YGGCCR	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	128, 419
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	130, 333
EcoT14I	CCWWGG	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	5 cut(s)	31, 173, 299, 414, 468
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	5 cut(s)	27, 169, 295, 410, 464
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	81, 167, 429
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	81, 167, 429
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	3 cut(s)	81, 167, 429
HaeIII	GGCC	3 cut(s)	49, 254, 300
HgaI	GACGC	2 cut(s)	98, 492
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	31, 173, 299, 414, 468
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	539
HindII	GTYRAC	1 cut(s)	539
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	63, 244, 356
Hpy166II	GTNNAC	5 cut(s)	182, 269, 482, 539, 634
Hpy188I	TCNGA	7 cut(s)	104, 259, 318, 600, 644, 720, 744
Hpy188III	TCNNGA	2 cut(s)	28, 680
Hpy8I	GTNNAC	5 cut(s)	182, 269, 482, 539, 634
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4III	ACNGT	6 cut(s)	266, 368, 562, 651, 727, 737
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	169, 269, 295, 364, 475, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 89, 275, 524
HpyF3I	CTNAG	3 cut(s)	248, 256, 453
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	5 cut(s)	31, 173, 299, 414, 468
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	239, 318
LpnPI	CCDG	9 cut(s)	31, 117, 144, 235, 320, 330, 347, 368, 429
Lsp1109I	GCAGC	2 cut(s)	153, 440
LweI	GCATC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	456, 680
MboII	GAAGA	3 cut(s)	396, 578, 668
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	6 cut(s)	108, 149, 214, 545, 573, 752
MluI	ACGCGT	1 cut(s)	484
MlyI	GAGTC	2 cut(s)	57, 365
MnlI	CCTC	4 cut(s)	8, 24, 33, 265
Mph1103I	ATGCAT	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	3 cut(s)	327, 470, 564
MspR9I	CCNGG	2 cut(s)	132, 335
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	132, 335
MvnI	CGCG	3 cut(s)	80, 92, 486
MwoI	GCNNNNNNNGC	4 cut(s)	84, 89, 275, 524
NdeI	CATATG	1 cut(s)	186
NlaIII	CATG	5 cut(s)	31, 173, 299, 414, 468
NmuCI	GTSAC	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	27
PasI	CCCWGGG	1 cut(s)	334
PciI	ACATGT	1 cut(s)	410
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	82, 168, 430
PleI	GAGTC	2 cut(s)	57, 364
PpsI	GAGTC	2 cut(s)	57, 364
PscI	ACATGT	1 cut(s)	410
Psp1406I	AACGTT	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	130, 333
PspGI	CCWGG	2 cut(s)	130, 333
PspPI	GGNCC	3 cut(s)	128, 252, 419
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	327, 470, 564
SatI	GCNGC	3 cut(s)	81, 167, 429
Sau96I	GGNCC	3 cut(s)	128, 252, 419
SchI	GAGTC	2 cut(s)	57, 365
ScrFI	CCNGG	2 cut(s)	132, 335
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	9 cut(s)	26, 133, 162, 181, 210, 236, 323, 421, 433
SfaNI	GCATC	1 cut(s)	287
SinI	GGWCC	2 cut(s)	128, 419
Sse9I	AATT	6 cut(s)	108, 149, 214, 545, 573, 752
SsiI	CCGC	3 cut(s)	80, 83, 92
StyD4I	CCNGG	2 cut(s)	130, 333
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	6 cut(s)	266, 368, 562, 651, 727, 737
TaiI	ACGT	1 cut(s)	181
TasI	AATT	6 cut(s)	108, 149, 214, 545, 573, 752
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	3 cut(s)	327, 470, 564
Tru9I	TTAA	3 cut(s)	327, 470, 564
TscAI	CASTG	3 cut(s)	271, 276, 732
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	2 cut(s)	166, 428
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	4 cut(s)	16, 186, 257, 522
TspGWI	ACGGA	2 cut(s)	75, 488
TspRI	CASTG	3 cut(s)	271, 276, 732
Van91I	CCANNNNNTGG	1 cut(s)	443
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	128, 419
XceI	RCATGY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	2 cut(s)	341, 526
XmnI	GAANNNNTTC	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.