Rorug03G0303500

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006541
Physical Location & Seq
Forward (+)
32066389 .. 32068707
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0303500.1

Sequence Viewer

Length: 681 bp
ATGGTTTCCTCCAGCCATGGCTTTACAGTTGATGGTGAGGGGTTCAATAATTATGGTGGTATATATGTCCAGAGGAATCCACGGCTGAAAGTCAAGGTGGTGGATGGGAGTAGCTTGGCTGTGGCCGTCATCCTTAACAGCATTCCGAAAGGGACAACCCAGGTTCTCCTTACAGGCAACCTCACAAAGGTTGCTTATGCCCTTGCCTTTTCTTTGTGCCAAAGAGATATCCAGGTAGTTACATTACAGCAGGCTGAGTATTTGAAGCTCACCAAATCATTAAATGGTACAGAGGGTAAGGTGGTTCATGACAGAAGCTATGCTCAAAAGATTTGGTTGGTGGGAGATGGGTTGAGTAAAAAAGAACAGTTGAGTGCACCAAAAGGAACAAGTTTTGTTCCCTTCTCTCAATTTCCACCAAAACAGTTGCGCAGAGACTGCCTCTACCACTACACACCAGCAATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGAACTGGTTGCCAAGGAGGGTGATGAGTGCGTCGCGTATAGCAGGAATAGTGCATGCATTGGAAGGTTGGAATGAGCACGAGTGTGGTCACACCATGTCCAGCATTGACAAAGTTTGGCAAGCAACTCTTCGACATGGCTTTCAGCCTCTAGTCTCCAAAGAGGCAAAGATTGATTAG

Protein Analysis

226

Amino Acids

25.11

Weight (kDa)

9.41

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CER1-like_C PF12076 55 - 217 8.7e-74 CER1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
AccII CGCG 1 cut(s) 538
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 123
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 46, 265
AjnI CCWGG 2 cut(s) 159, 231
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 3 cut(s) 114, 268, 318
AluI AGCT 3 cut(s) 114, 268, 318
Alw21I GWGCWC 2 cut(s) 379, 582
Alw26I GTCTC 3 cut(s) 429, 483, 661
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 1 cut(s) 463
AlwNI CAGNNNCTG 1 cut(s) 438
AoxI GGCC 1 cut(s) 123
ApaLI GTGCAC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 432
AsuHPI GGTGA 3 cut(s) 47, 262, 535
BaeGI GKGCMC 1 cut(s) 379
BauI CACGAG 1 cut(s) 581
Bbv12I GWGCWC 2 cut(s) 379, 582
BccI CCATC 3 cut(s) 26, 98, 341
BceAI ACGGC 2 cut(s) 98, 110
BciT130I CCWGG 2 cut(s) 161, 233
BcoDI GTCTC 3 cut(s) 429, 483, 661
BfaI CTAG 1 cut(s) 653
Bme1390I CCNGG 2 cut(s) 161, 233
BmrFI CCNGG 2 cut(s) 161, 233
BplI GAGNNNNNCTC 2 cut(s) 426, 458
BpuEI CTTGAG 1 cut(s) 503
BsaJI CCNNGG 4 cut(s) 16, 80, 159, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 161, 233
BseDI CCNNGG 4 cut(s) 16, 80, 159, 515
BseGI GGATG 2 cut(s) 109, 129
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 379, 582
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 3 cut(s) 429, 483, 661
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 379, 582
Bsp143I GATC 1 cut(s) 468
Bsp19I CCATGG 1 cut(s) 16
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 538
BspHI TCATGA 1 cut(s) 307
BspPI GGATC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 4 cut(s) 16, 80, 159, 515
BssMI GATC 1 cut(s) 468
BssSI CACGAG 1 cut(s) 581
BssT1I CCWWGG 2 cut(s) 16, 515
Bst2BI CACGAG 1 cut(s) 581
Bst2UI CCWGG 2 cut(s) 161, 233
Bst4CI ACNGT 3 cut(s) 28, 369, 426
Bst6I CTCTTC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 438
BstC8I GCNNGC 3 cut(s) 252, 558, 624
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 2 cut(s) 16, 80
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 109, 129
BstFNI CGCG 1 cut(s) 538
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 1 cut(s) 471
BstMAI GTCTC 3 cut(s) 429, 483, 661
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 1 cut(s) 438
BstNI CCWGG 2 cut(s) 161, 233
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 159, 231
BstSLI GKGCMC 1 cut(s) 379
BstUI CGCG 1 cut(s) 538
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 2 cut(s) 16, 80
BtsCI GGATG 2 cut(s) 109, 129
Cac8I GCNNGC 3 cut(s) 252, 558, 624
CaiI CAGNNNCTG 1 cut(s) 438
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 432
CseI GACGC 1 cut(s) 522
Csp6I GTAC 1 cut(s) 288
CviAII CATG 5 cut(s) 17, 308, 557, 598, 638
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco130I CCWWGG 2 cut(s) 16, 515
Eco32I GATATC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 159, 231
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 16, 515
EcoT22I ATGCAT 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 16, 515
FaeI CATG 5 cut(s) 20, 311, 560, 601, 641
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 1 cut(s) 166
FatI CATG 5 cut(s) 16, 307, 556, 597, 637
FokI GGATG 2 cut(s) 116, 116
FspBI CTAG 1 cut(s) 653
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 1 cut(s) 522
HhaI GCGC 1 cut(s) 432
Hin1II CATG 5 cut(s) 20, 311, 560, 601, 641
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 1 cut(s) 76
HphI GGTGA 3 cut(s) 47, 262, 535
Hpy166II GTNNAC 2 cut(s) 377, 493
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 3 cut(s) 70, 308, 482
Hpy8I GTNNAC 2 cut(s) 377, 493
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 2 cut(s) 412, 560
HpyCH4III ACNGT 3 cut(s) 28, 369, 426
HpyCH4V TGCA 3 cut(s) 377, 556, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 438
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 5 cut(s) 20, 311, 560, 601, 641
HspAI GCGC 1 cut(s) 430
Kzo9I GATC 1 cut(s) 468
MaeI CTAG 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 238, 590
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 2 cut(s) 478, 623
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 2 cut(s) 379, 582
MluCI AATT 2 cut(s) 49, 410
MmeI TCCRAC 1 cut(s) 551
MnlI CCTC 9 cut(s) 19, 31, 66, 191, 286, 452, 513, 658, 660
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 2 cut(s) 135, 281
MslI CAYNNNNRTG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 161, 233
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 2 cut(s) 161, 233
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 438
NcoI CCATGG 1 cut(s) 16
NdeII GATC 1 cut(s) 468
NlaIII CATG 5 cut(s) 20, 311, 560, 601, 641
NmuCI GTSAC 1 cut(s) 590
NsbI TGCGCA 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 1 cut(s) 560
OliI CACNNNNGTG 1 cut(s) 585
PaeI GCATGC 1 cut(s) 560
PagI TCATGA 1 cut(s) 307
PctI GAATGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 159, 231
PspGI CCWGG 2 cut(s) 159, 231
PstNI CAGNNNCTG 1 cut(s) 438
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 2 cut(s) 135, 281
Sau3AI GATC 1 cut(s) 468
ScrFI CCNGG 2 cut(s) 161, 233
SduI GDGCHC 2 cut(s) 379, 582
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SphI GCATGC 1 cut(s) 560
Sse9I AATT 2 cut(s) 49, 410
SspMI CTAG 1 cut(s) 653
StyD4I CCNGG 2 cut(s) 159, 231
StyI CCWWGG 2 cut(s) 16, 515
TaaI ACNGT 3 cut(s) 28, 369, 426
TaqI TCGA 1 cut(s) 634
TasI AATT 2 cut(s) 49, 410
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 135, 281
Tru9I TTAA 2 cut(s) 135, 281
TseFI GTSAC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 296, 479
VneI GTGCAC 1 cut(s) 375
XagI CCTNNNNNAGG 1 cut(s) 185
XceI RCATGY 1 cut(s) 560
XspI CTAG 1 cut(s) 653
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.