Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006541

Physical Location & Seq

Genomic Coordinates Reverse (-)

33624486 .. 33626059

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCAGAAGAGGTGGTGGTTCAAATCCTATCGAGGCTACCTCCCAAATCTTTGATGCGATTTAAATGCGTCCGTAAGTCATGGTGTGCACTGGTCAATAATCCAGGATTCATATTCCAGCAACTCCACTTGTACAACAAATTTGCCTCCACTCCCATTCTTATCAAGCGTACGGTCATTAGCCGGATTGAAAGTACCAGCGAGGAAGTTGTGTTTTCCCTCCTCAATCTTCATAATGATGATTATAACTGTCATCTTGAGGCTAACTGTCATTCTATTGTTGAGGACATCAATTTTCCAGCTTCTATGGGTCTAAAGACGAGGGGCCAATTTATTGAGCTTCCTATACCTAGTCCTCGTTCGTTTGATGAAGCTGTATATGTTATAGGTCATTGTGATGGGATCATTTGTCTTTTAGTTTTATATATTAGCACTAGCGTTATCATATGCAATCCAGCAATCAAGGAGTTTAGGCTTGTTAAAGATGTAGATGTAATCTCATTTCATGTCGGATTTGGCTATCATCCCAAATCCAAAGATTACATACTTATTAATGTCATGTCGACTGGAGAGAAAGTATATGATAACGAGCGTCTCGTTATTCATCCTCCTAGGGCAAAATTATACACTTTGGGAACTGGTTCTTGGAGAAAGATCAATACAAATTATTTGGAAACAGAAACTACCAACTTTTGGCCTAGTCTTTTCCAGTTCTACTTTAAAGGAATTTTCTATTGGTTGGGAAATGAGCAAAGGAAGGAACTCGTCTCTGAGTTTGACAGGGATGATGAGGATAACAATAGACTAGTAATCCTTTTCTATGATGCAGGTGATGAGCTCTTTCATAGTTTATTACTTCCAGATGGTTTCTATGACCCAAAGGAGGGTCGTTATGCTATGCGTCTTGCATTGTTGAATGAATCCATTGCTCTTTATGGCTTTCACCGCATTGGTAAGTGTCCTGCACCATTCGAAATTTGGATAATGGTTGACTTTGATGGTACCAACTGTTCTTGGACAAAACAGTTGGCAGTTGTGCCCACAGTGGAACTTTATATGCCAGGGGCACTTTGGAAGAACAATGCTATTCTAATTAATAGAGAAGGGCGAGTAGTTTCCTACAATTTTGATAAGGAGAAACTTAAATATAACCCGATACATGGTGTGCTTCGAGCAAATTTTCAAGCTGCGATTTGTGTGCATAGTATAGTTTCAGTCAAGGGACAACCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010229 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0021700 GO:0022414 GO:0031461 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0061614 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04114 ko04120 ko04914 map04110 map04114 map04120 map04914

Pfam Domains

Protein Families

Apc13p

Protein Analysis

411

Amino Acids

47.21

Weight (kDa)

6.64

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 43	6.5e-06	F-box-like
FBA_1	PF07734	115 - 377	6.6e-20	F-box associated beta propeller domain
FBA_3	PF08268	127 - 380	4.1e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73177
fragaria_vesca	FvH4_4g00490
malus_domestica	MD09G1239400.v1.1
prunus_persica	Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385941 RchiOBHm_Chr4g0387841 RchiOBHm_Chr4g0387941
rosa_multiflora	Rmu_sc0002509.1_g000032
rosa_roxburghii	Rroxscaffold_5G00334450 Rroxscaffold_5G00334490
rosa_rugosa	Rorug03G0303500 Rorug03G0303600 Rorug03G0313700 Rorug03G0313800 Rorug03G0313900 Rorug03G0314000
rosa_samantha	Rh4AG007700 Rh4AG019000 Rh4BG005700 Rh4CG008500 Rh4DG007200
rosa_wichuraiana	Rw4G000290 Rw4G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AarI	CACCTGC	1 cut(s)	818
Acc36I	ACCTGC	1 cut(s)	818
Acc65I	GGTACC	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	1 cut(s)	946
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	4 cut(s)	140, 726, 975, 1177
AfaI	GTAC	4 cut(s)	134, 172, 196, 1003
AfiI	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
AgsI	TTSAA	4 cut(s)	23, 191, 916, 1184
AhlI	ACTAGT	1 cut(s)	805
AjnI	CCWGG	2 cut(s)	103, 1060
AjuI	GAANNNNNNNTTGG	4 cut(s)	628, 660, 718, 750
AluBI	AGCT	5 cut(s)	302, 340, 374, 838, 1187
AluI	AGCT	5 cut(s)	302, 340, 374, 838, 1187
Alw21I	GWGCWC	2 cut(s)	91, 840
Alw26I	GTCTC	2 cut(s)	599, 772
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	2 cut(s)	325, 695
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	1187
ApoI	RAATTY	4 cut(s)	140, 726, 975, 1177
AseI	ATTAAT	2 cut(s)	552, 1095
Asp700I	GAANNNNTTC	1 cut(s)	640
Asp718I	GGTACC	1 cut(s)	1001
AspA2I	CCTAGG	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	842, 935
AsuII	TTCGAA	1 cut(s)	972
AvrII	CCTAGG	1 cut(s)	611
BaeGI	GKGCMC	3 cut(s)	91, 1041, 1069
BanI	GGYRCC	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	91, 840
BbvI	GCAGC	1 cut(s)	1174
BccI	CCATC	3 cut(s)	392, 857, 992
BcgI	CGANNNNNNTGC	4 cut(s)	48, 82, 1180, 1214
BciT130I	CCWGG	2 cut(s)	105, 1062
BcoDI	GTCTC	2 cut(s)	599, 772
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	5 cut(s)	351, 435, 612, 699, 806
BfuAI	ACCTGC	1 cut(s)	818
BisI	GCNGC	1 cut(s)	1188
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	1189
Bme1390I	CCNGG	2 cut(s)	105, 1062
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	326, 1003
BmrFI	CCNGG	2 cut(s)	105, 1062
BmsI	GCATC	2 cut(s)	45, 814
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	611, 1061
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
Bse1I	ACTGG	4 cut(s)	96, 571, 643, 709
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	2 cut(s)	105, 1062
BseDI	CCNNGG	2 cut(s)	611, 1061
BseGI	GGATG	3 cut(s)	523, 604, 790
BseLI	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	4 cut(s)	96, 571, 643, 709
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	3 cut(s)	91, 1041, 1069
BseXI	GCAGC	1 cut(s)	1174
BsgI	GTGCAG	1 cut(s)	948
BshFI	GGCC	2 cut(s)	327, 697
BshNI	GGYRCC	1 cut(s)	1001
BsiHKAI	GWGCWC	2 cut(s)	91, 840
BsiSI	CCGG	1 cut(s)	184
BsiWI	CGTACG	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
BsmAI	GTCTC	2 cut(s)	599, 772
BsmBI	CGTCTC	2 cut(s)	599, 772
BsnI	GGCC	2 cut(s)	327, 697
Bsp119I	TTCGAA	1 cut(s)	972
Bsp1286I	GDGCHC	4 cut(s)	91, 840, 1041, 1069
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	402, 654
BspACI	CCGC	1 cut(s)	946
BspANI	GGCC	2 cut(s)	327, 697
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	326, 1003
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	972
BspT107I	GGYRCC	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	96, 571, 643, 709
BssECI	CCNNGG	2 cut(s)	611, 1061
BssMI	GATC	2 cut(s)	402, 654
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	2 cut(s)	105, 1062
Bst4CI	ACNGT	6 cut(s)	175, 251, 269, 1010, 1026, 1045
Bst6I	CTCTTC	1 cut(s)	3
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	972
BstDEI	CTNAG	1 cut(s)	771
BstF5I	GGATG	3 cut(s)	523, 604, 790
BstKTI	GATC	2 cut(s)	405, 657
BstMAI	GTCTC	2 cut(s)	599, 772
BstMBI	GATC	2 cut(s)	402, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	945
BstNI	CCWGG	2 cut(s)	105, 1062
BstSCI	CCNGG	2 cut(s)	103, 1060
BstSLI	GKGCMC	3 cut(s)	91, 1041, 1069
BstV1I	GCAGC	1 cut(s)	1174
BsuRI	GGCC	2 cut(s)	327, 697
BtsCI	GGATG	3 cut(s)	523, 604, 790
BtsIMutI	CAGTG	2 cut(s)	89, 1050
BveI	ACCTGC	1 cut(s)	818
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	3 cut(s)	58, 581, 890
Csp6I	GTAC	4 cut(s)	133, 171, 195, 1002
CviAII	CATG	4 cut(s)	81, 506, 559, 1160
CviQI	GTAC	4 cut(s)	133, 171, 195, 1002
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	2 cut(s)	404, 656
DpnII	GATC	2 cut(s)	402, 654
DraI	TTTAAA	2 cut(s)	64, 721
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	840
Eco53kI	GAGCTC	1 cut(s)	838
EcoICRI	GAGCTC	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	103, 1060
EcoT14I	CCWWGG	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	611
Esp3I	CGTCTC	2 cut(s)	599, 772
FaeI	CATG	4 cut(s)	84, 509, 562, 1163
FatI	CATG	4 cut(s)	80, 505, 558, 1159
FauNDI	CATATG	1 cut(s)	446
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	1 cut(s)	1188
FokI	GGATG	3 cut(s)	510, 591, 797
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	1 cut(s)	1188
FspBI	CTAG	5 cut(s)	351, 435, 612, 699, 806
GluI	GCNGC	1 cut(s)	1188
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	327, 697
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	3 cut(s)	58, 581, 890
Hin1II	CATG	4 cut(s)	84, 509, 562, 1163
HincII	GTYRAC	2 cut(s)	564, 991
HindII	GTYRAC	2 cut(s)	564, 991
HinfI	GANTC	2 cut(s)	108, 920
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	842, 935
Hpy166II	GTNNAC	3 cut(s)	89, 564, 991
Hpy188I	TCNGA	2 cut(s)	512, 772
Hpy188III	TCNNGA	2 cut(s)	257, 860
Hpy8I	GTNNAC	3 cut(s)	89, 564, 991
HpyAV	CCTTC	2 cut(s)	751, 1097
HpyCH4III	ACNGT	6 cut(s)	175, 251, 269, 1010, 1026, 1045
HpyCH4V	TGCA	6 cut(s)	89, 450, 827, 908, 965, 1201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	945
HpyF3I	CTNAG	1 cut(s)	771
Hsp92II	CATG	4 cut(s)	84, 509, 562, 1163
KpnI	GGTACC	1 cut(s)	1005
Kzo9I	GATC	2 cut(s)	402, 654
Lsp1109I	GCAGC	1 cut(s)	1174
LweI	GCATC	2 cut(s)	45, 814
MaeI	CTAG	5 cut(s)	351, 435, 612, 699, 806
MalI	GATC	2 cut(s)	404, 656
MboI	GATC	2 cut(s)	402, 654
MboII	GAAGA	3 cut(s)	20, 221, 1087
MhlI	GDGCHC	4 cut(s)	91, 840, 1041, 1069
MmeI	TCCRAC	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	640
MseI	TTAA	6 cut(s)	63, 480, 552, 720, 1095, 1143
MslI	CAYNNNNRTG	2 cut(s)	237, 396
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	105, 1062
MvaI	CCWGG	2 cut(s)	105, 1062
MwoI	GCNNNNNNNGC	1 cut(s)	945
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	2 cut(s)	402, 654
NlaIII	CATG	4 cut(s)	84, 509, 562, 1163
NlaIV	GGNNCC	2 cut(s)	326, 1003
NspV	TTCGAA	1 cut(s)	972
PaqCI	CACCTGC	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	2 cut(s)	108, 920
Pfl23II	CGTACG	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	693
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	1189
PshBI	ATTAAT	2 cut(s)	552, 1095
PsiI	TTATAA	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	840
Psp6I	CCWGG	2 cut(s)	103, 1060
PspGI	CCWGG	2 cut(s)	103, 1060
PspLI	CGTACG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	326, 1003
PspPI	GGNCC	1 cut(s)	325
PsrI	GAACNNNNNNTAC	2 cut(s)	994, 1026
RsaI	GTAC	4 cut(s)	134, 172, 196, 1003
RsaNI	GTAC	4 cut(s)	133, 171, 195, 1002
RseI	CAYNNNNRTG	2 cut(s)	237, 396
SacI	GAGCTC	1 cut(s)	840
SalI	GTCGAC	1 cut(s)	562
SaqAI	TTAA	6 cut(s)	63, 480, 552, 720, 1095, 1143
SatI	GCNGC	1 cut(s)	1188
Sau3AI	GATC	2 cut(s)	402, 654
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	105, 1062
SduI	GDGCHC	4 cut(s)	91, 840, 1041, 1069
SfaNI	GCATC	2 cut(s)	45, 814
SfuI	TTCGAA	1 cut(s)	972
SmiI	ATTTAAAT	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	237, 396
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SpeI	ACTAGT	1 cut(s)	805
SsiI	CCGC	1 cut(s)	946
SspMI	CTAG	5 cut(s)	351, 435, 612, 699, 806
SstI	GAGCTC	1 cut(s)	840
StyD4I	CCNGG	2 cut(s)	103, 1060
StyI	CCWWGG	1 cut(s)	611
SwaI	ATTTAAAT	1 cut(s)	64
TaaI	ACNGT	6 cut(s)	175, 251, 269, 1010, 1026, 1045
TaqI	TCGA	4 cut(s)	32, 563, 972, 1171
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	108, 920
Tru1I	TTAA	6 cut(s)	63, 480, 552, 720, 1095, 1143
Tru9I	TTAA	6 cut(s)	63, 480, 552, 720, 1095, 1143
TscAI	CASTG	2 cut(s)	96, 1050
TseI	GCWGC	1 cut(s)	1187
TspDTI	ATGAA	7 cut(s)	100, 221, 384, 494, 593, 833, 933
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	96, 1050
Van91I	CCANNNNNTGG	1 cut(s)	693
VneI	GTGCAC	1 cut(s)	87
VspI	ATTAAT	2 cut(s)	552, 1095
XapI	RAATTY	4 cut(s)	140, 726, 975, 1177
XcmI	CCANNNNNNNNNTGG	2 cut(s)	975, 1068
XmaJI	CCTAGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	640
XspI	CTAG	5 cut(s)	351, 435, 612, 699, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.