MD10G1107800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0018091
Physical Location & Seq
Forward (+)
17739007 .. 17744046
5040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1107800.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGCTAACGTTTCCGTTCTGAACCACGAACAACTGCAGTACCTTGCTCGTACACTTTACTACAAAGAAACAGAGGCCATCCTGCATACCAAATTCAACTCCGAAACCGAACTCGCGAAACACCTCAAGGATTGTAACGATGGTTACCAATCCGCTCTAGCCCTTTTGGATGCAGGTAGTGAGTTAGAGCATCGGTTTCGAAACGACGAAGCTCGGGCTTCTACAGCTCAGGAAATCTTTGGTTATATAATAAACGGGGCCAACTATGCACTCCAGACGGTGCGAAATTCTAGCTTGCGATCGCATTGTGTCGAAAAAGTTAGAGAGCATGTGAAATTGCTGGCCGATGCAATAGAAGTGGTACGCAACGTTAATGATGTGGCCAAGGAGGTAACTGAATACAGGAAGGCTATGTTGGAGTACACCAGGAGGCATCAAAATCCCCCATCACGCGAATTCTCAAGATGGCTCAAAGGGAGTGGCATTAAGTATGAGGAATTAGTGCAGAGGTATCAGGCTAAGCTTAAATTCCGAGGACGTTTCAAGGACCTGAAAGATGTACAAAAGATACAGGTGTACGAGGAAATAATAGAGGCATCAGGGCGGGGAAAGGTTAAAGGTCATCGGTTATCAAAAGTCTTGGGGGTTGCTGGCATATCCGTGTTTCTTTTTTCTGCAGGCGTGACGGTATGGGAAATATATTTAGCTGACAACCCACTTCAAACGGCAACACGTGCGGCTGTGGTGGCTATGTCATCAGTTGGAGGTGCGACGCTAGGAAGCGCTATAGGGGTTGCCCTGTCAAGCTGTCTCCCGGTACATCCTTTATTCGTGGTGATGGCAGGAATAATAGTTAGCATTGCAGGAGCTTTTATTCTTGGGGATTTCGCCGGCTGGTTGGTTGATTTGATTTTTAAATCTGGGGGTAGTACCACCTTGAGCACTGAGGGGCTTCGGTGCTACGTAGCACCGATGCCTGATGGTGTCGCTTTAGCCCGCCAAATTCTGCATCATCACCCACCAAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.02

Weight (kDa)

8.99

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 155
AccII CGCG 2 cut(s) 116, 453
AciI CCGC 4 cut(s) 153, 604, 737, 997
AclI AACGTT 2 cut(s) 9, 369
AcoI YGGCCR 2 cut(s) 342, 381
AcsI RAATTY 5 cut(s) 92, 286, 455, 527, 1002
AcvI CACGTG 1 cut(s) 734
AfaI GTAC 8 cut(s) 41, 52, 363, 422, 561, 578, 819, 931
AfeI AGCGCT 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 3 cut(s) 97, 544, 722
AjnI CCWGG 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 7 cut(s) 212, 227, 294, 523, 707, 807, 869
AluI AGCT 7 cut(s) 212, 227, 294, 523, 707, 807, 869
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 1 cut(s) 815
Ama87I CYCGRG 1 cut(s) 213
Aor51HI AGCGCT 1 cut(s) 784
AoxI GGCC 4 cut(s) 75, 258, 342, 381
ApoI RAATTY 5 cut(s) 92, 286, 455, 527, 1002
AsiSI GCGATCGC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 2 cut(s) 258, 547
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 847, 1007
AsuII TTCGAA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 547
BaeI ACNNNNGTAYC 4 cut(s) 23, 56, 560, 593
BalI TGGCCA 1 cut(s) 383
BbrPI CACGTG 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 944
BccI CCATC 6 cut(s) 86, 134, 454, 459, 832, 974
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 1 cut(s) 815
BfaI CTAG 3 cut(s) 158, 291, 776
BfmI CTRYAG 4 cut(s) 35, 222, 675, 786
BfoI RGCGCY 1 cut(s) 786
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 1 cut(s) 738
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 739
Bme1390I CCNGG 2 cut(s) 427, 815
Bme18I GGWCC 1 cut(s) 547
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 258, 547
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 427, 815
BmsI GCATC 7 cut(s) 160, 199, 337, 442, 605, 963, 1018
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 3 cut(s) 110, 445, 958
BpuMI CCSGG 1 cut(s) 815
BsaAI YACGTR 2 cut(s) 734, 964
BsaJI CCNNGG 2 cut(s) 384, 532
Bse118I RCCGGY 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 858
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 384, 532
BseGI GGATG 3 cut(s) 78, 175, 820
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 242, 936
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 2 cut(s) 116, 453
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 4 cut(s) 77, 260, 344, 383
BsiEI CGRYCG 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 815, 891
BsmAI GTCTC 1 cut(s) 815
BsnI GGCC 4 cut(s) 77, 260, 344, 383
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 944
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 1 cut(s) 299
Bsp1720I GCTNAGC 1 cut(s) 519
Bsp68I TCGCGA 1 cut(s) 116
BspACI CCGC 4 cut(s) 153, 604, 737, 997
BspANI GGCC 4 cut(s) 77, 260, 344, 383
BspCNI CTCAG 2 cut(s) 241, 937
BspFNI CGCG 2 cut(s) 116, 453
BspLI GGNNCC 1 cut(s) 259
BspMAI CTGCAG 2 cut(s) 39, 679
BspMI ACCTGC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 890
BsrGI TGTACA 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 2 cut(s) 384, 532
BssMI GATC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 280, 688
BstAPI GCANNNNNTGC 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 559
BstBAI YACGTR 2 cut(s) 734, 964
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 6 cut(s) 296, 342, 652, 679, 892, 997
BstDEI CTNAG 3 cut(s) 228, 519, 945
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 3 cut(s) 78, 175, 820
BstFNI CGCG 2 cut(s) 116, 453
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 1 cut(s) 785
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 815
BstMBI GATC 1 cut(s) 299
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 4 cut(s) 224, 266, 734, 746
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 425, 813
BstSFI CTRYAG 4 cut(s) 35, 222, 675, 786
BstSNI TACGTA 1 cut(s) 964
BstUI CGCG 2 cut(s) 116, 453
BsuRI GGCC 4 cut(s) 77, 260, 344, 383
BtsCI GGATG 3 cut(s) 78, 175, 820
BtsIMutI CAGTG 1 cut(s) 942
BtuMI TCGCGA 1 cut(s) 116
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 6 cut(s) 296, 342, 652, 679, 892, 997
CfoI GCGC 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 2 cut(s) 258, 547
CseI GACGC 1 cut(s) 781
Csp6I GTAC 8 cut(s) 40, 51, 362, 421, 560, 577, 818, 930
CspCI CAANNNNNGTGG 4 cut(s) 339, 374, 460, 495
CviAII CATG 1 cut(s) 329
CviQI GTAC 8 cut(s) 40, 51, 362, 421, 560, 577, 818, 930
DdeI CTNAG 3 cut(s) 228, 519, 945
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
DraI TTTAAA 1 cut(s) 916
EaeI YGGCCR 2 cut(s) 342, 381
Eco105I TACGTA 1 cut(s) 964
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 547
Eco47III AGCGCT 1 cut(s) 784
Eco72I CACGTG 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 547
EcoO65I GGTNACC 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 332
FatI CATG 1 cut(s) 328
FauI CCCGC 2 cut(s) 597, 1004
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 3 cut(s) 65, 182, 807
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 3 cut(s) 158, 291, 776
GlaI GCGC 1 cut(s) 784
GluI GCNGC 1 cut(s) 738
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 4 cut(s) 77, 260, 344, 383
HapII CCGG 2 cut(s) 815, 891
HgaI GACGC 1 cut(s) 781
HhaI GCGC 1 cut(s) 785
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 521
HpaII CCGG 2 cut(s) 815, 891
HphI GGTGA 2 cut(s) 847, 1007
Hpy166II GTNNAC 3 cut(s) 53, 423, 577
Hpy188I TCNGA 3 cut(s) 21, 103, 533
Hpy188III TCNNGA 4 cut(s) 115, 230, 274, 462
Hpy8I GTNNAC 3 cut(s) 53, 423, 577
Hpy99I CGWCG 2 cut(s) 209, 775
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 280, 688
HpyCH4IV ACGT 5 cut(s) 9, 369, 538, 733, 963
HpyCH4V TGCA 9 cut(s) 37, 85, 173, 269, 350, 505, 677, 863, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 266, 734, 746
HpyF3I CTNAG 3 cut(s) 228, 519, 945
HpySE526I ACGT 5 cut(s) 9, 369, 538, 733, 963
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 783
KroI GCCGGC 1 cut(s) 890
KroNI GCCGGC 1 cut(s) 892
Kzo9I GATC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 866
LweI GCATC 7 cut(s) 160, 199, 337, 442, 605, 963, 1018
MaeI CTAG 3 cut(s) 158, 291, 776
MaeII ACGT 5 cut(s) 9, 369, 538, 733, 963
MaeIII GTNAC 4 cut(s) 134, 143, 391, 682
MalI GATC 1 cut(s) 301
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 944
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 7 cut(s) 92, 286, 335, 455, 497, 527, 1002
MluNI TGGCCA 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 396, 742
Mox20I TGGCCA 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 890
MscI TGGCCA 1 cut(s) 383
MseI TTAA 5 cut(s) 372, 486, 525, 615, 915
MslI CAYNNNNRTG 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 2 cut(s) 815, 891
MspR9I CCNGG 2 cut(s) 427, 815
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 2 cut(s) 116, 453
MwoI GCNNNNNNNGC 4 cut(s) 224, 266, 734, 746
NaeI GCCGGC 1 cut(s) 892
NciI CCSGG 1 cut(s) 815
NdeII GATC 1 cut(s) 299
NgoMIV GCCGGC 1 cut(s) 890
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 682
NruI TCGCGA 1 cut(s) 116
NspI RCATGY 1 cut(s) 332
NspV TTCGAA 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 892
PkrI GCNGC 1 cut(s) 739
Ple19I CGATCG 1 cut(s) 302
PmaCI CACGTG 1 cut(s) 734
PmlI CACGTG 1 cut(s) 734
Ppu21I YACGTR 2 cut(s) 734, 964
PpuMI RGGWCCY 1 cut(s) 547
Psp1406I AACGTT 2 cut(s) 9, 369
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 425
PspCI CACGTG 1 cut(s) 734
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 258, 547
PspPPI RGGWCCY 1 cut(s) 547
PstI CTGCAG 2 cut(s) 39, 679
PvuI CGATCG 1 cut(s) 302
RgaI GCGATCGC 1 cut(s) 302
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 8 cut(s) 41, 52, 363, 422, 561, 578, 819, 931
RsaNI GTAC 8 cut(s) 40, 51, 362, 421, 560, 577, 818, 930
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 5 cut(s) 372, 486, 525, 615, 915
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 2 cut(s) 258, 547
ScrFI CCNGG 2 cut(s) 427, 815
SduI GDGCHC 1 cut(s) 944
SfaAI GCGATCGC 1 cut(s) 302
SfaNI GCATC 7 cut(s) 160, 199, 337, 442, 605, 963, 1018
SfcI CTRYAG 4 cut(s) 35, 222, 675, 786
SfuI TTCGAA 1 cut(s) 199
SgfI GCGATCGC 1 cut(s) 302
SinI GGWCC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 3 cut(s) 125, 460, 937
SmoI CTYRAG 3 cut(s) 125, 460, 937
SnaBI TACGTA 1 cut(s) 964
Sse9I AATT 7 cut(s) 92, 286, 335, 455, 497, 527, 1002
SsiI CCGC 4 cut(s) 153, 604, 737, 997
SspI AATATT 1 cut(s) 1028
SspMI CTAG 3 cut(s) 158, 291, 776
StyD4I CCNGG 2 cut(s) 425, 813
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 280, 688
TaiI ACGT 5 cut(s) 12, 372, 541, 736, 966
TaqI TCGA 2 cut(s) 199, 312
TasI AATT 7 cut(s) 92, 286, 335, 455, 497, 527, 1002
TatI WGTACW 2 cut(s) 420, 559
TauI GCSGC 1 cut(s) 740
Tru1I TTAA 5 cut(s) 372, 486, 525, 615, 915
Tru9I TTAA 5 cut(s) 372, 486, 525, 615, 915
TscAI CASTG 1 cut(s) 949
TseFI GTSAC 1 cut(s) 682
Tsp45I GTSAC 1 cut(s) 682
TspGWI ACGGA 2 cut(s) 4, 649
TspRI CASTG 1 cut(s) 949
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 5 cut(s) 92, 286, 455, 527, 1002
XceI RCATGY 1 cut(s) 332
XspI CTAG 3 cut(s) 158, 291, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.