Rroxscaffold_1G00006390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018091
Physical Location & Seq
Forward (+)
8482434 .. 8485730
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006390.1

Sequence Viewer

Length: 330 bp
ATGGAGGCATCTTGGCAAGGCCGAGAAGGTGGTTTTCTAGTCAGCTCTTGGCGGCTTCGACTACCACGGGGTAGCTTGAGTGTCGAGGGGCATATGCACAATGCGCGACGGACGAGCCGGCCCCGAGGGCTGCTCCCGAGGCAGCCGCCTCAGCCACCACTCTCCGACGGGCCTCCGCCAACACCCCAGGTGTCGGTGGAAGAAACAACACGCACAGAGCAACACTCCAGGTGTCGAAGCAAGAAACAGCACGCAGGGGCAAAATCGACTTTTCGTCCATGGCAGGCTCTTCACTGTTCATTAGCCGATGAACAGTGCCTTGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

10.38

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 106
AciI CCGC 3 cut(s) 52, 146, 176
AfiI CCNNNNNNNGG 1 cut(s) 193
AhdI GACNNNNNGTC 1 cut(s) 273
AjnI CCWGG 2 cut(s) 186, 227
AluBI AGCT 2 cut(s) 45, 75
AluI AGCT 2 cut(s) 45, 75
Ama87I CYCGRG 2 cut(s) 123, 136
AoxI GGCC 3 cut(s) 19, 119, 170
ApeKI GCWGC 2 cut(s) 130, 142
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 120, 170
AvaI CYCGRG 2 cut(s) 123, 136
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 117, 154
BciT130I CCWGG 2 cut(s) 188, 229
BfaI CTAG 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 4 cut(s) 53, 131, 143, 146
BlsI GCNGC 4 cut(s) 54, 132, 144, 147
Bme1390I CCNGG 2 cut(s) 188, 229
BmeRI GACNNNNNGTC 1 cut(s) 273
BmeT110I CYCGRG 2 cut(s) 123, 136
BmgT120I GGNCC 2 cut(s) 120, 170
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 2 cut(s) 188, 229
BmsI GCATC 1 cut(s) 17
BplI GAGNNNNNCTC 4 cut(s) 117, 149, 209, 241
BpmI CTGGAG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 97
BsaJI CCNNGG 5 cut(s) 65, 124, 137, 186, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 117
BseBI CCWGG 2 cut(s) 188, 229
BseDI CCNNGG 5 cut(s) 65, 124, 137, 186, 278
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 117, 154
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 21, 121, 172
BsiHKCI CYCGRG 2 cut(s) 123, 136
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 3 cut(s) 21, 121, 172
BsoBI CYCGRG 2 cut(s) 123, 136
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 3 cut(s) 52, 146, 176
BspANI GGCC 3 cut(s) 21, 121, 172
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 122
BspQI GCTCTTC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 5 cut(s) 65, 124, 137, 186, 278
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 188, 229
Bst4CI ACNGT 2 cut(s) 296, 315
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 119, 252, 285
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 2 cut(s) 65, 278
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 103, 127, 139, 151
BstNI CCWGG 2 cut(s) 188, 229
BstSCI CCNGG 2 cut(s) 186, 227
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 117, 154
BsuRI GGCC 3 cut(s) 21, 121, 172
BtgI CCRYGG 2 cut(s) 65, 278
BtsIMutI CAGTG 2 cut(s) 292, 320
Cac8I GCNNGC 3 cut(s) 119, 252, 285
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 120, 170
CviAII CATG 1 cut(s) 279
DdeI CTNAG 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 294
Eam1105I GACNNNNNGTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 294
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 123, 136
EcoRII CCWGG 2 cut(s) 186, 227
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 1 cut(s) 282
FaiI YATR 3 cut(s) 93, 95, 280
FatI CATG 1 cut(s) 278
FauNDI CATATG 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 53, 131, 143, 146
Fsp4HI GCNGC 4 cut(s) 53, 131, 143, 146
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 105
GluI GCNGC 4 cut(s) 53, 131, 143, 146
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 3 cut(s) 21, 121, 172
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 282
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 111, 170
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 296, 315
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 127, 139, 151
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 282
HspAI GCGC 1 cut(s) 104
KroI GCCGGC 1 cut(s) 117
KroNI GCCGGC 1 cut(s) 119
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 7 cut(s) 131, 173, 200, 214, 240, 241, 269
Lsp1109I GCAGC 2 cut(s) 117, 154
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 38
MboII GAAGA 2 cut(s) 212, 281
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 5 cut(s) 79, 119, 132, 159, 183
MroNI GCCGGC 1 cut(s) 117
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 188, 229
MvaI CCWGG 2 cut(s) 188, 229
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 4 cut(s) 103, 127, 139, 151
NaeI GCCGGC 1 cut(s) 119
NcoI CCATGG 1 cut(s) 278
NdeI CATATG 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 117
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 54, 132, 144, 147
Psp6I CCWGG 2 cut(s) 186, 227
PspGI CCWGG 2 cut(s) 186, 227
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 120, 170
SapI GCTCTTC 1 cut(s) 294
SatI GCNGC 4 cut(s) 53, 131, 143, 146
Sau96I GGNCC 2 cut(s) 120, 170
ScrFI CCNGG 2 cut(s) 188, 229
SetI ASST 5 cut(s) 31, 47, 77, 192, 233
SfaNI GCATC 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 76, 320
SmoI CTYRAG 2 cut(s) 76, 320
SsiI CCGC 3 cut(s) 52, 146, 176
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 186, 227
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 2 cut(s) 296, 315
TaqI TCGA 4 cut(s) 58, 84, 235, 266
TauI GCSGC 2 cut(s) 55, 148
TscAI CASTG 2 cut(s) 299, 320
TseI GCWGC 2 cut(s) 130, 142
TspDTI ATGAA 2 cut(s) 288, 324
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 2 cut(s) 299, 320
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.