Rh2AG462000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018091
Physical Location & Seq
Forward (+)
67932782 .. 67937066
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG462000.1

Sequence Viewer

Length: 789 bp
ATGGTGAACGGTGCCAACTTTGCAGTCCAGGGGCTGAAGAACTATACTCTTCGAATGGATTACATAAAGAAAATAGGAGACTGCTCCAGAGAGATTCGCAATGAACTGGCTAAGGAGGCGAACAACAATGACATTGAAATTAAGAGACTAGCTGAGGAAGCACACAACTTCAGGATCATGGTGCTGAAATTCATCACCAAGGGTCAAGTATCACCTGTATCACACGAATTCAAAAAATGGCTCAAGAACAGCGGCCTCAAGTTTATGGACCTAATACGAATGTATCAAAACAAGCGGAAATACACTGGACTGTTCAAGGATCTAAAAGATGTAATAAAAATTCAGGTATATGGGGATATACTAGTGGCATCTGGGAGGCCAAGATTTCCATTGAGCATGAGGGGTTTTGGTCGTGCTAGCATAACATTCATACTTTTTACTGTTGGCTTTATGGTGTGGGATCTATTTTCAGATGATTGCGACATCGTTCAAACGACAACTCGTGGTGCTGTGGTGGCTGCAGCATCAATTGGTGGTGCCCTGGTAGGAGAATTTATTGGAGTTACACTAGCAACTGCTGCCGGGCTAAGTGGTGGCATTGTGTTGATGGTTGGATTAATAGTTGGCTTTGCAGGAGCCTTTCTCATTGGAGAATTCACTGGTTTGTTGATCGATTCCATGTTTGCTGGAACTTACGACACTTTAAGCACAAAGGGCCTTCGATGTTACGTAGCAAAGCTGCCTGATGGCGAGGCTCTTGCTCGTCAACTTGTGCATCGGAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.85

Weight (kDa)

9.47

Isoelectric Point (pI)

17.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 11, 536
AciI CCGC 2 cut(s) 252, 295
AclWI GGATC 3 cut(s) 182, 327, 468
AcsI RAATTY 5 cut(s) 188, 227, 339, 551, 653
AcuI CTGAAG 2 cut(s) 56, 154
AgsI TTSAA 4 cut(s) 137, 232, 316, 491
AhlI ACTAGT 1 cut(s) 361
AjnI CCWGG 2 cut(s) 27, 540
AluBI AGCT 2 cut(s) 152, 739
AluI AGCT 2 cut(s) 152, 739
Alw26I GTCTC 2 cut(s) 72, 139
AlwI GGATC 3 cut(s) 182, 327, 468
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 3 cut(s) 253, 377, 715
ApeKI GCWGC 4 cut(s) 518, 521, 578, 739
ApoI RAATTY 5 cut(s) 188, 227, 339, 551, 653
AseI ATTAAT 1 cut(s) 617
AspS9I GGNCC 2 cut(s) 268, 715
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 3 cut(s) 16, 187, 204
AsuII TTCGAA 1 cut(s) 52
AsuNHI GCTAGC 1 cut(s) 416
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 541
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BanI GGYRCC 2 cut(s) 11, 536
BauI CACGAG 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 505, 533, 565, 726
BccI CCATC 2 cut(s) 601, 740
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 2 cut(s) 29, 542
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 72, 139
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 4 cut(s) 149, 362, 417, 569
BfmI CTRYAG 1 cut(s) 519
BisI GCNGC 5 cut(s) 253, 519, 522, 579, 740
BlsI GCNGC 5 cut(s) 254, 520, 523, 580, 741
Bme1390I CCNGG 3 cut(s) 29, 542, 583
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 268, 715
BmiI GGNNCC 3 cut(s) 13, 538, 637
BmrFI CCNGG 3 cut(s) 29, 542, 583
BmsI GCATC 3 cut(s) 377, 533, 784
BmtI GCTAGC 1 cut(s) 420
BplI GAGNNNNNCTC 2 cut(s) 627, 659
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 2 cut(s) 111, 153
Bpu14I TTCGAA 1 cut(s) 52
BpuEI CTTGAG 2 cut(s) 227, 242
BpuMI CCSGG 1 cut(s) 583
Bsa29I ATCGAT 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 730
BsaJI CCNNGG 3 cut(s) 28, 198, 540
Bse1I ACTGG 3 cut(s) 111, 310, 664
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 29, 542
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 3 cut(s) 28, 198, 540
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 3 cut(s) 111, 310, 664
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 4 cut(s) 505, 533, 565, 726
BshFI GGCC 3 cut(s) 255, 379, 717
BshNI GGYRCC 2 cut(s) 11, 536
BshVI ATCGAT 1 cut(s) 672
BsiSI CCGG 1 cut(s) 582
BsmAI GTCTC 2 cut(s) 72, 139
BsnI GGCC 3 cut(s) 255, 379, 717
Bsp119I TTCGAA 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 4 cut(s) 174, 319, 460, 669
BspACI CCGC 2 cut(s) 252, 295
BspANI GGCC 3 cut(s) 255, 379, 717
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 672
BspLI GGNNCC 3 cut(s) 13, 538, 637
BspMAI CTGCAG 1 cut(s) 523
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 182, 327, 468
BspT104I TTCGAA 1 cut(s) 52
BspT107I GGYRCC 2 cut(s) 11, 536
BsrDI GCAATG 1 cut(s) 106
BsrI ACTGG 3 cut(s) 111, 310, 664
BssECI CCNNGG 3 cut(s) 28, 198, 540
BssMI GATC 4 cut(s) 174, 319, 460, 669
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 29, 542
Bst4CI ACNGT 3 cut(s) 11, 312, 442
Bst6I CTCTTC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 730
BstBI TTCGAA 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 111, 153, 587
BstKTI GATC 4 cut(s) 177, 322, 463, 672
BstMAI GTCTC 2 cut(s) 72, 139
BstMBI GATC 4 cut(s) 174, 319, 460, 669
BstMWI GCNNNNNNNGC 6 cut(s) 20, 116, 158, 515, 578, 714
BstNI CCWGG 2 cut(s) 29, 542
BstSCI CCNGG 3 cut(s) 27, 540, 581
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 541
BstSNI TACGTA 1 cut(s) 730
BstV1I GCAGC 4 cut(s) 505, 533, 565, 726
BstX2I RGATCY 2 cut(s) 319, 460
BstYI RGATCY 2 cut(s) 319, 460
Bsu15I ATCGAT 1 cut(s) 672
BsuRI GGCC 3 cut(s) 255, 379, 717
BsuTUI ATCGAT 1 cut(s) 672
BtsIMutI CAGTG 2 cut(s) 303, 657
Cac8I GCNNGC 1 cut(s) 418
CaiI CAGNNNCTG 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 268, 715
ClaI ATCGAT 1 cut(s) 672
CviAII CATG 3 cut(s) 178, 397, 679
DdeI CTNAG 3 cut(s) 111, 153, 587
DpnI GATC 4 cut(s) 176, 321, 462, 671
DpnII GATC 4 cut(s) 174, 319, 460, 669
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco105I TACGTA 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 56, 154
EcoO109I RGGNCCY 1 cut(s) 715
EcoRI GAATTC 2 cut(s) 227, 653
EcoRII CCWGG 2 cut(s) 27, 540
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 181, 400, 682
FatI CATG 3 cut(s) 177, 396, 678
Fnu4HI GCNGC 5 cut(s) 253, 519, 522, 579, 740
Fsp4HI GCNGC 5 cut(s) 253, 519, 522, 579, 740
FspBI CTAG 4 cut(s) 149, 362, 417, 569
GluI GCNGC 5 cut(s) 253, 519, 522, 579, 740
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 3 cut(s) 255, 379, 717
HapII CCGG 1 cut(s) 582
Hin1II CATG 3 cut(s) 181, 400, 682
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HinfI GANTC 2 cut(s) 94, 674
HpaII CCGG 1 cut(s) 582
HphI GGTGA 3 cut(s) 16, 187, 204
Hpy166II GTNNAC 2 cut(s) 7, 767
Hpy188I TCNGA 2 cut(s) 472, 780
Hpy188III TCNNGA 3 cut(s) 87, 172, 244
Hpy8I GTNNAC 2 cut(s) 7, 767
HpyAV CCTTC 1 cut(s) 728
HpyCH4III ACNGT 3 cut(s) 11, 312, 442
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 4 cut(s) 23, 521, 632, 775
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 116, 158, 515, 578, 714
HpyF3I CTNAG 3 cut(s) 111, 153, 587
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 3 cut(s) 181, 400, 682
Kzo9I GATC 4 cut(s) 174, 319, 460, 669
LmnI GCTCC 3 cut(s) 89, 635, 780
Lsp1109I GCAGC 4 cut(s) 505, 533, 565, 726
LweI GCATC 3 cut(s) 377, 533, 784
MaeI CTAG 4 cut(s) 149, 362, 417, 569
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 2 cut(s) 562, 725
MalI GATC 4 cut(s) 176, 321, 462, 671
MboI GATC 4 cut(s) 174, 319, 460, 669
MboII GAAGA 2 cut(s) 41, 49
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 2 cut(s) 319, 460
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 8 cut(s) 138, 188, 227, 339, 528, 551, 653, 784
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 6 cut(s) 109, 148, 266, 369, 393, 745
MseI TTAA 3 cut(s) 141, 617, 704
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 3 cut(s) 29, 542, 583
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 2 cut(s) 29, 542
MwoI GCNNNNNNNGC 6 cut(s) 20, 116, 158, 515, 578, 714
NciI CCSGG 1 cut(s) 583
NdeII GATC 4 cut(s) 174, 319, 460, 669
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 3 cut(s) 181, 400, 682
NlaIV GGNNCC 3 cut(s) 13, 538, 637
NspV TTCGAA 1 cut(s) 52
PfeI GAWTC 2 cut(s) 94, 674
PkrI GCNGC 5 cut(s) 254, 520, 523, 580, 741
Ppu21I YACGTR 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 27, 540
PspGI CCWGG 2 cut(s) 27, 540
PspN4I GGNNCC 3 cut(s) 13, 538, 637
PspPI GGNCC 2 cut(s) 268, 715
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 2 cut(s) 319, 460
SaqAI TTAA 3 cut(s) 141, 617, 704
SatI GCNGC 5 cut(s) 253, 519, 522, 579, 740
Sau3AI GATC 4 cut(s) 174, 319, 460, 669
Sau96I GGNCC 2 cut(s) 268, 715
ScrFI CCNGG 3 cut(s) 29, 542, 583
SduI GDGCHC 1 cut(s) 541
SetI ASST 6 cut(s) 154, 217, 273, 348, 732, 741
SfaNI GCATC 3 cut(s) 377, 533, 784
SfcI CTRYAG 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 52
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 242, 257
SmoI CTYRAG 2 cut(s) 242, 257
SnaBI TACGTA 1 cut(s) 730
SpeI ACTAGT 1 cut(s) 361
Sse9I AATT 8 cut(s) 138, 188, 227, 339, 528, 551, 653, 784
SsiI CCGC 2 cut(s) 252, 295
SspMI CTAG 4 cut(s) 149, 362, 417, 569
StyD4I CCNGG 3 cut(s) 27, 540, 581
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 11, 312, 442
TaiI ACGT 1 cut(s) 732
TaqI TCGA 3 cut(s) 52, 672, 721
TasI AATT 8 cut(s) 138, 188, 227, 339, 528, 551, 653, 784
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 94, 674
Tru1I TTAA 3 cut(s) 141, 617, 704
Tru9I TTAA 3 cut(s) 141, 617, 704
TscAI CASTG 2 cut(s) 310, 664
TseI GCWGC 4 cut(s) 518, 521, 578, 739
TspDTI ATGAA 3 cut(s) 117, 181, 418
TspRI CASTG 2 cut(s) 310, 664
VpaK11BI GGWCC 1 cut(s) 268
VspI ATTAAT 1 cut(s) 617
XapI RAATTY 5 cut(s) 188, 227, 339, 551, 653
XspI CTAG 4 cut(s) 149, 362, 417, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.