pycom09g08030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018091
Physical Location & Seq
Forward (+)
6155788 .. 6157834
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08030.2

Sequence Viewer

Length: 1137 bp
ATGTATCTAAGCATCCACCTACCTAGAAAGACTTGCACTACTACTAGTACTCCTACTACCACGTTTGTTGTACTCCTCCTCCTCCGTCATATGGCTCAGGAGGAATTTAATTACTTTACCTATCTCAGTCCTGAGCAGCTGCGCAAGCTTGCTTCTATACTTTACTACCAAGAAGCTGAGGCCATTAAGAATATCCAGTTCGAATCCGAAGCCAAACTCGCGAAATACCTCCAGGATTCCAAAGCTTGTTATGAATCGGCGATAAGGCTTTTGGATGGTGCTACTAAGTTGGAGCCTTGGTTTGATCACGACGACAAGGTTCGGGCTTCTATTGCTCACGACATCTACGGTTATATTGAAAACGCTGCCAACCATGCACTCCAGTTCGTGAGAAACTTTCATGTGCGAATGGATTACGTGAACAAGATTAGAGAGCATGTCGATGAACTCAGTGGTAAACTGGATGATGATGTGACCAATATGGAAGAGCTGGCAAAAGAAGCTCACAAATTCAGGAACGACACGTTGGAGATCGCCAGGGGTAGTCAAAGTCCCGCATCGAGACAATACTCCAGATGGATCAAGGAAACCGGCAAGACGTTTGAAGAACTATTGCAGAAGTATCAGACAGAGCTTGGATACGGAAGACGTCGTTTCGCAGACCTCGAAGATTTTGAAAAGATAAAGGTGTACGGCACAATCATATCTAAATCCGGACGGGCAAATATTGAAGTAACCGCGTATTCAAAGATTCTTGGGGCTGCTGGCATAGCTGCTCTTATTCTTGCTGCAGGAATTTTAGTATGGGACATATATTCAGCAGAGAATCCACTTCAAACCGCGGCACGTGACGCTGTAACGACTGCAGCAGCAATTGGCGGTGCGATGATAGGAGAAGTTGTTGGAGTTGCCCTCGCATCCATGGTCACTGGCAATGCTTTGTTAGTGCTCATGGCGGGATTAACAGCCGGCATCGCCGGCGCTTTTCTTATCGGAGAATTTGCCATCTGGTTGATTAATGAGATTTTTGGGTCTGGAGGCAGTGTCCCGTTGAGCACGATGGGGCATCGATGTTACGTCACACAGTTGCCCGAGGGCTCGGTTCTGGCACGCCAAATTGCGCATCAGCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

41.93

Weight (kDa)

5.97

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 652
Acc16I TGCGCA 2 cut(s) 143, 1122
AccII CGCG 3 cut(s) 221, 740, 842
AccIII TCCGGA 1 cut(s) 713
AciI CCGC 6 cut(s) 555, 738, 840, 842, 879, 956
AclWI GGATC 1 cut(s) 587
AcsI RAATTY 4 cut(s) 104, 509, 795, 998
AcvI CACGTG 1 cut(s) 848
AcyI GRCGYC 1 cut(s) 649
AfaI GTAC 3 cut(s) 49, 72, 692
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 6 cut(s) 359, 605, 677, 731, 747, 836
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 2 cut(s) 231, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 509, 541
AluBI AGCT 8 cut(s) 139, 148, 176, 245, 490, 503, 634, 773
AluI AGCT 8 cut(s) 139, 148, 176, 245, 490, 503, 634, 773
Alw21I GWGCWC 2 cut(s) 951, 1058
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 1091
Aor13HI TCCGGA 1 cut(s) 713
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 8 cut(s) 136, 139, 365, 761, 773, 788, 866, 869
ApoI RAATTY 4 cut(s) 104, 509, 795, 998
AseI ATTAAT 1 cut(s) 1017
AspLEI GCGC 3 cut(s) 144, 983, 1123
AsuII TTCGAA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 1100
BbrPI CACGTG 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 652
Bbv12I GWGCWC 2 cut(s) 951, 1058
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 8 cut(s) 126, 148, 352, 748, 760, 775, 878, 881
BccI CCATC 4 cut(s) 269, 570, 1013, 1054
BceAI ACGGC 1 cut(s) 709
BciT130I CCWGG 2 cut(s) 233, 538
BciVI GTATCC 1 cut(s) 632
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 556
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 2 cut(s) 24, 45
BfmI CTRYAG 2 cut(s) 789, 864
BfoI RGCGCY 1 cut(s) 984
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 9 cut(s) 137, 140, 366, 762, 774, 789, 843, 867, 870
BlsI GCNGC 9 cut(s) 138, 141, 367, 763, 775, 790, 844, 868, 871
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 233, 538
BmeT110I CYCGRG 1 cut(s) 1091
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 2 cut(s) 233, 538
BmsI GCATC 6 cut(s) 21, 566, 926, 981, 1075, 1132
BpiI GAAGAC 1 cut(s) 652
BplI GAGNNNNNCTC 2 cut(s) 897, 929
BpmI CTGGAG 4 cut(s) 215, 365, 556, 1056
Bpu10I CCTNAGC 3 cut(s) 96, 132, 177
Bpu14I TTCGAA 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 1069
BsaAI YACGTR 2 cut(s) 418, 848
BsaHI GRCGYC 1 cut(s) 649
BsaJI CCNNGG 5 cut(s) 296, 537, 840, 921, 1092
BsaWI WCCGGW 1 cut(s) 713
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 3 cut(s) 590, 968, 977
Bse1I ACTGG 4 cut(s) 196, 382, 465, 934
Bse3DI GCAATG 1 cut(s) 940
BseAI TCCGGA 1 cut(s) 713
BseBI CCWGG 2 cut(s) 233, 538
BseCI ATCGAT 1 cut(s) 1069
BseDI CCNNGG 5 cut(s) 296, 537, 840, 921, 1092
BseGI GGATG 4 cut(s) 12, 280, 469, 917
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 5 cut(s) 110, 123, 139, 168, 463
BseNI ACTGG 4 cut(s) 196, 382, 465, 934
BseRI GAGGAG 3 cut(s) 65, 68, 71
BseXI GCAGC 8 cut(s) 126, 148, 352, 748, 760, 775, 878, 881
Bsh1236I CGCG 3 cut(s) 221, 740, 842
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 1069
BsiHKAI GWGCWC 2 cut(s) 951, 1058
BsiHKCI CYCGRG 1 cut(s) 1091
BsiSI CCGG 4 cut(s) 591, 714, 969, 978
BslFI GGGAC 3 cut(s) 537, 821, 1031
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 556
BsmFI GGGAC 3 cut(s) 537, 821, 1031
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 1091
Bsp119I TTCGAA 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 951, 1058, 1100
Bsp13I TCCGGA 1 cut(s) 713
Bsp143I GATC 3 cut(s) 304, 531, 579
Bsp19I CCATGG 1 cut(s) 921
Bsp68I TCGCGA 1 cut(s) 221
BspACI CCGC 6 cut(s) 555, 738, 840, 842, 879, 956
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 5 cut(s) 109, 124, 138, 169, 462
BspDI ATCGAT 1 cut(s) 1069
BspEI TCCGGA 1 cut(s) 713
BspFNI CGCG 3 cut(s) 221, 740, 842
BspLI GGNNCC 1 cut(s) 294
BspMAI CTGCAG 2 cut(s) 793, 868
BspPI GGATC 1 cut(s) 587
BspQI GCTCTTC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 940
BsrFI RCCGGY 3 cut(s) 590, 968, 977
BsrI ACTGG 4 cut(s) 196, 382, 465, 934
BssAI RCCGGY 3 cut(s) 590, 968, 977
BssECI CCNNGG 5 cut(s) 296, 537, 840, 921, 1092
BssMI GATC 3 cut(s) 304, 531, 579
BssNI GRCGYC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 296, 921
Bst2UI CCWGG 2 cut(s) 233, 538
Bst4CI ACNGT 2 cut(s) 350, 1086
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 649
BstBAI YACGTR 2 cut(s) 418, 848
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 7 cut(s) 146, 150, 492, 766, 970, 979, 1111
BstDEI CTNAG 7 cut(s) 8, 96, 125, 132, 177, 285, 449
BstDSI CCRYGG 2 cut(s) 840, 921
BstF5I GGATG 4 cut(s) 12, 280, 469, 917
BstFNI CGCG 3 cut(s) 221, 740, 842
BstH2I RGCGCY 1 cut(s) 984
BstHHI GCGC 3 cut(s) 144, 983, 1123
BstKTI GATC 3 cut(s) 307, 534, 582
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 3 cut(s) 304, 531, 579
BstMWI GCNNNNNNNGC 9 cut(s) 145, 218, 332, 374, 500, 770, 851, 974, 978
BstNI CCWGG 2 cut(s) 233, 538
BstNSI RCATGY 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 231, 536
BstSFI CTRYAG 2 cut(s) 789, 864
BstUI CGCG 3 cut(s) 221, 740, 842
BstV1I GCAGC 8 cut(s) 126, 148, 352, 748, 760, 775, 878, 881
BstV2I GAAGAC 1 cut(s) 652
Bsu15I ATCGAT 1 cut(s) 1069
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 1069
BtgI CCRYGG 2 cut(s) 840, 921
BtgZI GCGATG 2 cut(s) 899, 958
BtsCI GGATG 4 cut(s) 12, 280, 469, 917
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 3 cut(s) 457, 927, 1048
BtuMI TCGCGA 1 cut(s) 221
Cac8I GCNNGC 7 cut(s) 146, 150, 492, 766, 970, 979, 1111
CfoI GCGC 3 cut(s) 144, 983, 1123
Cfr10I RCCGGY 3 cut(s) 590, 968, 977
Cfr42I CCGCGG 1 cut(s) 843
ClaI ATCGAT 1 cut(s) 1069
CseI GACGC 1 cut(s) 860
Csp6I GTAC 3 cut(s) 48, 71, 691
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 5 cut(s) 374, 401, 437, 922, 952
CviQI GTAC 3 cut(s) 48, 71, 691
DdeI CTNAG 7 cut(s) 8, 96, 125, 132, 177, 285, 449
DpnI GATC 3 cut(s) 306, 533, 581
DpnII GATC 3 cut(s) 304, 531, 579
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 296, 921
Eco24I GRGCYC 1 cut(s) 1100
Eco72I CACGTG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 1091
EcoRII CCWGG 2 cut(s) 231, 536
EcoT14I CCWWGG 2 cut(s) 296, 921
EcoT38I GRGCYC 1 cut(s) 1100
ErhI CCWWGG 2 cut(s) 296, 921
FaeI CATG 5 cut(s) 377, 404, 440, 925, 955
FaqI GGGAC 3 cut(s) 537, 821, 1031
FatI CATG 5 cut(s) 373, 400, 436, 921, 951
FauI CCCGC 2 cut(s) 562, 949
FauNDI CATATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 9 cut(s) 137, 140, 366, 762, 774, 789, 843, 867, 870
FokI GGATG 3 cut(s) 287, 476, 904
FriOI GRGCYC 1 cut(s) 1100
Fsp4HI GCNGC 9 cut(s) 137, 140, 366, 762, 774, 789, 843, 867, 870
FspBI CTAG 2 cut(s) 24, 45
FspI TGCGCA 2 cut(s) 143, 1122
GlaI GCGC 3 cut(s) 143, 982, 1122
GluI GCNGC 9 cut(s) 137, 140, 366, 762, 774, 789, 843, 867, 870
GsuI CTGGAG 4 cut(s) 215, 365, 556, 1056
HaeII RGCGCY 1 cut(s) 984
HaeIII GGCC 1 cut(s) 182
HapII CCGG 4 cut(s) 591, 714, 969, 978
HgaI GACGC 1 cut(s) 860
HhaI GCGC 3 cut(s) 144, 983, 1123
Hin1I GRCGYC 1 cut(s) 649
Hin1II CATG 5 cut(s) 377, 404, 440, 925, 955
Hin6I GCGC 3 cut(s) 142, 981, 1121
HinP1I GCGC 3 cut(s) 142, 981, 1121
HindIII AAGCTT 2 cut(s) 146, 243
HinfI GANTC 5 cut(s) 203, 236, 254, 751, 826
HpaII CCGG 4 cut(s) 591, 714, 969, 978
Hpy166II GTNNAC 3 cut(s) 421, 458, 691
Hpy188I TCNGA 3 cut(s) 208, 627, 995
Hpy8I GTNNAC 3 cut(s) 421, 458, 691
Hpy99I CGWCG 2 cut(s) 314, 654
HpyCH4III ACNGT 2 cut(s) 350, 1086
HpyCH4IV ACGT 7 cut(s) 62, 417, 524, 599, 649, 847, 1077
HpyCH4V TGCA 5 cut(s) 36, 377, 616, 791, 866
HpyF10VI GCNNNNNNNGC 9 cut(s) 145, 218, 332, 374, 500, 770, 851, 974, 978
HpyF3I CTNAG 7 cut(s) 8, 96, 125, 132, 177, 285, 449
HpySE526I ACGT 7 cut(s) 62, 417, 524, 599, 649, 847, 1077
Hsp92I GRCGYC 1 cut(s) 649
Hsp92II CATG 5 cut(s) 377, 404, 440, 925, 955
HspAI GCGC 3 cut(s) 142, 981, 1121
Kpn2I TCCGGA 1 cut(s) 713
KroI GCCGGC 2 cut(s) 968, 977
KroNI GCCGGC 2 cut(s) 970, 979
Ksp22I TGATCA 1 cut(s) 304
KspI CCGCGG 1 cut(s) 843
Kzo9I GATC 3 cut(s) 304, 531, 579
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 8 cut(s) 126, 148, 352, 748, 760, 775, 878, 881
LweI GCATC 6 cut(s) 21, 566, 926, 981, 1075, 1132
MaeI CTAG 2 cut(s) 24, 45
MaeII ACGT 7 cut(s) 62, 417, 524, 599, 649, 847, 1077
MaeIII GTNAC 7 cut(s) 472, 733, 848, 856, 925, 1073, 1078
MalI GATC 3 cut(s) 306, 533, 581
MboI GATC 3 cut(s) 304, 531, 579
MboII GAAGA 4 cut(s) 497, 617, 657, 680
MfeI CAATTG 1 cut(s) 873
MhlI GDGCHC 3 cut(s) 951, 1058, 1100
MluCI AATT 7 cut(s) 104, 109, 509, 795, 873, 998, 1116
MmeI TCCRAC 3 cut(s) 270, 507, 883
MreI CGCCGGCG 1 cut(s) 977
MroI TCCGGA 1 cut(s) 713
MroNI GCCGGC 2 cut(s) 968, 977
MseI TTAA 5 cut(s) 108, 186, 962, 1017, 1135
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 2 cut(s) 139, 842
MspI CCGG 4 cut(s) 591, 714, 969, 978
MspR9I CCNGG 2 cut(s) 233, 538
MunI CAATTG 1 cut(s) 873
MvaI CCWGG 2 cut(s) 233, 538
MvnI CGCG 3 cut(s) 221, 740, 842
MwoI GCNNNNNNNGC 9 cut(s) 145, 218, 332, 374, 500, 770, 851, 974, 978
NaeI GCCGGC 2 cut(s) 970, 979
NcoI CCATGG 1 cut(s) 921
NdeI CATATG 1 cut(s) 90
NdeII GATC 3 cut(s) 304, 531, 579
NgoMIV GCCGGC 2 cut(s) 968, 977
NlaIII CATG 5 cut(s) 377, 404, 440, 925, 955
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 4 cut(s) 472, 848, 925, 1078
NruI TCGCGA 1 cut(s) 221
NsbI TGCGCA 2 cut(s) 143, 1122
NspI RCATGY 1 cut(s) 440
NspV TTCGAA 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdiI GCCGGC 2 cut(s) 970, 979
PfeI GAWTC 5 cut(s) 203, 236, 254, 751, 826
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 9 cut(s) 138, 141, 367, 763, 775, 790, 844, 868, 871
PmaCI CACGTG 1 cut(s) 848
PmlI CACGTG 1 cut(s) 848
Ppu21I YACGTR 2 cut(s) 418, 848
PshBI ATTAAT 1 cut(s) 1017
Psp6I CCWGG 2 cut(s) 231, 536
PspCI CACGTG 1 cut(s) 848
PspGI CCWGG 2 cut(s) 231, 536
PspN4I GGNNCC 1 cut(s) 294
PstI CTGCAG 2 cut(s) 793, 868
PvuII CAGCTG 1 cut(s) 139
RruI TCGCGA 1 cut(s) 221
RsaI GTAC 3 cut(s) 49, 72, 692
RsaNI GTAC 3 cut(s) 48, 71, 691
RseI CAYNNNNRTG 1 cut(s) 441
SacII CCGCGG 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 5 cut(s) 108, 186, 962, 1017, 1135
SatI GCNGC 9 cut(s) 137, 140, 366, 762, 774, 789, 843, 867, 870
Sau3AI GATC 3 cut(s) 304, 531, 579
ScaI AGTACT 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 233, 538
SduI GDGCHC 3 cut(s) 951, 1058, 1100
SfaNI GCATC 6 cut(s) 21, 566, 926, 981, 1075, 1132
SfcI CTRYAG 2 cut(s) 789, 864
Sfr303I CCGCGG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 201
SgrAI CRCCGGYG 1 cut(s) 977
SgrBI CCGCGG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 441
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 7 cut(s) 104, 109, 509, 795, 873, 998, 1116
SsiI CCGC 6 cut(s) 555, 738, 840, 842, 879, 956
SspI AATATT 1 cut(s) 727
SspMI CTAG 2 cut(s) 24, 45
StyD4I CCNGG 2 cut(s) 231, 536
StyI CCWWGG 2 cut(s) 296, 921
TaaI ACNGT 2 cut(s) 350, 1086
TaiI ACGT 7 cut(s) 65, 420, 527, 602, 652, 850, 1080
TaqI TCGA 5 cut(s) 201, 441, 560, 666, 1069
TasI AATT 7 cut(s) 104, 109, 509, 795, 873, 998, 1116
TatI WGTACW 2 cut(s) 47, 70
TauI GCSGC 1 cut(s) 845
TfiI GAWTC 5 cut(s) 203, 236, 254, 751, 826
Tru1I TTAA 5 cut(s) 108, 186, 962, 1017, 1135
Tru9I TTAA 5 cut(s) 108, 186, 962, 1017, 1135
TscAI CASTG 3 cut(s) 457, 934, 1048
TseFI GTSAC 4 cut(s) 472, 848, 925, 1078
TseI GCWGC 8 cut(s) 136, 139, 365, 761, 773, 788, 866, 869
Tsp45I GTSAC 4 cut(s) 472, 848, 925, 1078
TspDTI ATGAA 3 cut(s) 267, 389, 459
TspGWI ACGGA 2 cut(s) 74, 657
TspRI CASTG 3 cut(s) 457, 934, 1048
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 4 cut(s) 104, 509, 795, 998
XceI RCATGY 1 cut(s) 440
XspI CTAG 2 cut(s) 24, 45
ZraI GACGTC 1 cut(s) 650
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.