Rmu_sc0001516.1_g000062

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001516.1
OG0018091
Physical Location & Seq
Forward (+)
226931 .. 227458
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001516.1_g000062.1.cds

Sequence Viewer

Length: 528 bp
atggccaacttatccatgctcactattcagcagctgcatacgcttgctcgtctagtttacctaaaagaagagcaggccattaatggtatcaaattcgaatctgaaccctcattagtgaaatacctccgggactgtaaagcttgttacgactccgttgtagcatatttgaataaggctagtgcgttagagcacgagtatccagaccacagcactaaggcttctattgcttcagacatctttggttatatggtgaacggtgccaactttgcagtccaattggtgaacaactttactcttcgaatggcttacgtgaagaaaatcagagactactccagagagattagcaataaattggctatggtggcggataacaatgtgattgaagttaggagactagctgaggaggcatccaacttcaggaacatgacgctggaagccatcaggaagcgtcaatcacctgcatcacgccaattctcaatattgctcaaggagaccggcctcaagtttgaggacctaatacgaacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.0

Weight (kDa)

9.04

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 466
Acc36I ACCTGC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 2 cut(s) 213, 400
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 2 cut(s) 169, 383
AluBI AGCT 3 cut(s) 34, 140, 398
AluI AGCT 3 cut(s) 34, 140, 398
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 3 cut(s) 318, 385, 485
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 3 cut(s) 3, 75, 496
ApeKI GCWGC 2 cut(s) 31, 34
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 511
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 262, 292, 447
AsuII TTCGAA 2 cut(s) 96, 298
AvaII GGWCC 1 cut(s) 511
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 21, 43
BccI CCATC 1 cut(s) 446
BciVI GTATCC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 3 cut(s) 318, 385, 485
BfaI CTAG 3 cut(s) 53, 177, 395
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 416, 470
BpmI CTGGAG 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 2 cut(s) 96, 298
BpuEI CTTGAG 2 cut(s) 470, 485
BpuMI CCSGG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 485
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse118I RCCGGY 1 cut(s) 494
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 21, 43
BshFI GGCC 3 cut(s) 5, 77, 498
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 127, 495
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 318, 385, 485
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 5, 77, 498
Bso31I GGTCTC 1 cut(s) 485
Bsp119I TTCGAA 2 cut(s) 96, 298
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 1 cut(s) 365
BspANI GGCC 3 cut(s) 5, 77, 498
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 466
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 2 cut(s) 96, 298
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 485
BsrFI RCCGGY 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 494
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 134, 257
Bst6I CTCTTC 2 cut(s) 63, 300
BstBAI YACGTR 1 cut(s) 310
BstBI TTCGAA 2 cut(s) 96, 298
BstC8I GCNNGC 2 cut(s) 45, 75
BstDEI CTNAG 2 cut(s) 213, 399
BstF5I GGATG 1 cut(s) 407
BstMAI GTCTC 3 cut(s) 318, 385, 485
BstMWI GCNNNNNNNGC 5 cut(s) 40, 224, 266, 362, 404
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 21, 43
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 5, 77, 498
BtsCI GGATG 1 cut(s) 407
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 45, 75
CaiI CAGNNNCTG 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 511
CseI GACGC 2 cut(s) 436, 437
CviAII CATG 2 cut(s) 16, 424
DdeI CTNAG 2 cut(s) 213, 399
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 63, 300
EarI CTCTTC 2 cut(s) 63, 300
EciI GGCGGA 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 2 cut(s) 213, 400
EcoO109I RGGNCCY 1 cut(s) 511
FaeI CATG 2 cut(s) 19, 427
FaiI YATR 7 cut(s) 17, 39, 163, 246, 248, 359, 425
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 15, 423
Fnu4HI GCNGC 2 cut(s) 32, 35
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 32, 35
FspBI CTAG 3 cut(s) 53, 177, 395
GluI GCNGC 2 cut(s) 32, 35
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 3 cut(s) 5, 77, 498
HapII CCGG 2 cut(s) 127, 495
HgaI GACGC 2 cut(s) 436, 437
Hin1II CATG 2 cut(s) 19, 427
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 2 cut(s) 98, 149
HpaII CCGG 2 cut(s) 127, 495
HphI GGTGA 3 cut(s) 262, 292, 447
Hpy166II GTNNAC 3 cut(s) 58, 253, 283
Hpy188I TCNGA 3 cut(s) 103, 232, 323
Hpy188III TCNNGA 4 cut(s) 200, 333, 418, 442
Hpy8I GTNNAC 3 cut(s) 58, 253, 283
HpyCH4III ACNGT 2 cut(s) 134, 257
HpyCH4IV ACGT 2 cut(s) 309, 524
HpyCH4V TGCA 3 cut(s) 37, 269, 461
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 224, 266, 362, 404
HpyF3I CTNAG 2 cut(s) 213, 399
HpySE526I ACGT 2 cut(s) 309, 524
Hsp92II CATG 2 cut(s) 19, 427
LguI GCTCTTC 1 cut(s) 63
LpnPI CCDG 9 cut(s) 59, 140, 213, 346, 403, 416, 427, 471, 508
Lsp1109I GCAGC 2 cut(s) 21, 43
LweI GCATC 2 cut(s) 416, 470
MaeI CTAG 3 cut(s) 53, 177, 395
MaeII ACGT 2 cut(s) 309, 524
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 3 cut(s) 80, 287, 325
MfeI CAATTG 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 92, 275, 350, 470
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 6 cut(s) 118, 134, 394, 397, 502, 509
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 127, 495
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 5 cut(s) 40, 224, 266, 362, 404
NciI CCSGG 1 cut(s) 128
NlaIII CATG 2 cut(s) 19, 427
NlaIV GGNNCC 1 cut(s) 259
NspV TTCGAA 2 cut(s) 96, 298
PaqCI CACCTGC 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 2 cut(s) 33, 36
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 511
PshBI ATTAAT 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 511
PspPPI RGGWCCY 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 32, 35
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 192
SetI ASST 9 cut(s) 36, 63, 126, 142, 312, 400, 460, 516, 527
SfaNI GCATC 2 cut(s) 416, 470
SfuI TTCGAA 2 cut(s) 96, 298
SinI GGWCC 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 485, 500
SmoI CTYRAG 2 cut(s) 485, 500
Sse9I AATT 4 cut(s) 92, 275, 350, 470
SsiI CCGC 1 cut(s) 365
SspI AATATT 1 cut(s) 480
SspMI CTAG 3 cut(s) 53, 177, 395
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 134, 257
TaiI ACGT 2 cut(s) 312, 527
TaqI TCGA 2 cut(s) 96, 298
TasI AATT 4 cut(s) 92, 275, 350, 470
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 2 cut(s) 31, 34
TspGWI ACGGA 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 511
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 1 cut(s) 92
XspI CTAG 3 cut(s) 53, 177, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.