MD17G1147800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0018091
Physical Location & Seq
Forward (+)
13443202 .. 13447922
4721 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1147800.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGTCTCAGGCAGACTTTAATCACTTTACCTATCTCGGTCCTGAGCAGCTGCGGAAGCTTGCTCGTATAATTTACTACCAAGAAACTGAGGCCATTAAGAATATCCAGTTTGAATACGAAGCCAAACTCGCGAAATACCTCCGAGATTGCAAAGCTTGTTACGAATCGGCGATAAGGCTTTTGGATAGTGGTAGTAAGTTGGAGCCTTGGTTTAATAATGACGACAACGATCGGGCTTCTATTGCTCACGACATCTACGGTTATGTTGTAAACGCTACCAACCATGCACTCCAGTTCGTGCGCAACTTTCGTGTGCGAATGGATTACGTAAACAAGATTGAAAAGCATGTCGACGGCCTTCGTGCTGAACTGGATGATGATCTGACTAATATGGAAGAGCTGGCAAGAAAAGCTTCCACATTCAGGAACGACATGCTGGAGATCGCCAGGGGTAGTCAAAGTCCAGCATCACGCCAATACTCCAGATGGATCAAGGAAACCGGCAAGTCGTTTGAAGAACTAGTGCAGAAGTATCAGACAGACCTTGGATACGGGGGACTTCTTTTCGAAGAACTGGAAGATGTAGTAAAGATACGGGTGTTCGGAAAAATAATATTTGCATCGGGGCGGGCAAATATTAATGTAACCGCCTATTCAAAGATGTTTGGGGCTGCTGGCATTGCTGTTCTTATTTTTGCTACAGGATTTATGGTATGGGACATATTTTCAGCAGATAACCCTCTTCAAACGGCAGTGCGTGATGCTGTAATAACTGCAGCATCAATTGGTGGTGCGATGATAGGAGAACTTGTTGGTGTTGCCCTCGCGGCCATGGTCACTGCTAATCCGTTGTTAATACTCATGGCAGGAATAACAGCGAGCATTGCCGGAGCTTTTCTTATTGGAGAATTTGCCACCTGGTTGATTGATGTGGTTTTTGGGTCTGGAGGCCGTGCCTCATTGAGCACGATGGGCCATCGATGTTACGTCGCACATTTGCCCGACGGCTCAGTTCTAGCACGCCGAATTGCGCATCAGCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.64

Weight (kDa)

6.02

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 302, 1032
AccI GTMKAC 1 cut(s) 351
AccII CGCG 2 cut(s) 131, 827
AciI CCGC 4 cut(s) 52, 628, 648, 827
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 1 cut(s) 908
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 5 cut(s) 113, 341, 515, 657, 746
AhlI ACTAGT 1 cut(s) 520
AjnI CCWGG 2 cut(s) 446, 917
AluBI AGCT 6 cut(s) 49, 58, 155, 400, 413, 893
AluI AGCT 6 cut(s) 49, 58, 155, 400, 413, 893
Alw21I GWGCWC 1 cut(s) 968
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 497
AoxI GGCC 5 cut(s) 90, 355, 828, 949, 973
ApeKI GCWGC 4 cut(s) 46, 49, 671, 776
ApoI RAATTY 1 cut(s) 908
AseI ATTAAT 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 412
AspLEI GCGC 2 cut(s) 303, 1033
AspS9I GGNCC 2 cut(s) 38, 973
AsuII TTCGAA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 584, 617
Bbv12I GWGCWC 1 cut(s) 968
BbvI GCAGC 4 cut(s) 36, 58, 658, 788
BccI CCATC 3 cut(s) 480, 964, 984
BceAI ACGGC 4 cut(s) 370, 765, 936, 1021
BciT130I CCWGG 2 cut(s) 448, 919
BciVI GTATCC 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 2 cut(s) 521, 1016
BfmI CTRYAG 2 cut(s) 699, 774
BfuI GTATCC 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 827
BisI GCNGC 5 cut(s) 47, 50, 672, 777, 828
BlsI GCNGC 5 cut(s) 48, 51, 673, 778, 829
Bme1390I CCNGG 2 cut(s) 448, 919
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 38, 973
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 448, 919
BmsI GCATC 5 cut(s) 476, 629, 751, 788, 1042
BpmI CTGGAG 4 cut(s) 275, 458, 466, 966
Bpu10I CCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 979
BsaAI YACGTR 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 4 cut(s) 206, 447, 544, 831
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 795, 825
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 4 cut(s) 106, 292, 375, 579
Bse3DI GCAATG 2 cut(s) 678, 882
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 2 cut(s) 448, 919
BseCI ATCGAT 1 cut(s) 979
BseDI CCNNGG 4 cut(s) 206, 447, 544, 831
BseGI GGATG 1 cut(s) 379
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMI GCAATG 2 cut(s) 678, 882
BseMII CTCAG 4 cut(s) 20, 33, 78, 1023
BseNI ACTGG 4 cut(s) 106, 292, 375, 579
BseXI GCAGC 4 cut(s) 36, 58, 658, 788
BsgI GTGCAG 1 cut(s) 545
Bsh1236I CGCG 2 cut(s) 131, 827
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 5 cut(s) 92, 357, 830, 951, 975
BshVI ATCGAT 1 cut(s) 979
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 968
BsiSI CCGG 2 cut(s) 501, 888
BslFI GGGAC 2 cut(s) 570, 731
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 570, 731
BsnI GGCC 5 cut(s) 92, 357, 830, 951, 975
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 968
Bsp143I GATC 4 cut(s) 229, 379, 441, 489
Bsp19I CCATGG 1 cut(s) 831
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 4 cut(s) 52, 628, 648, 827
BspANI GGCC 5 cut(s) 92, 357, 830, 951, 975
BspCNI CTCAG 4 cut(s) 19, 34, 79, 1022
BspDI ATCGAT 1 cut(s) 979
BspFNI CGCG 2 cut(s) 131, 827
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 778
BspPI GGATC 1 cut(s) 497
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 567
BsrDI GCAATG 2 cut(s) 678, 882
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 4 cut(s) 106, 292, 375, 579
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 4 cut(s) 206, 447, 544, 831
BssMI GATC 4 cut(s) 229, 379, 441, 489
BssT1I CCWWGG 3 cut(s) 206, 544, 831
Bst2UI CCWGG 2 cut(s) 448, 919
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 390, 747
BstBAI YACGTR 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 6 cut(s) 60, 402, 630, 676, 880, 1021
BstDEI CTNAG 4 cut(s) 6, 42, 87, 1009
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 2 cut(s) 131, 827
BstHHI GCGC 2 cut(s) 303, 1033
BstKTI GATC 4 cut(s) 232, 382, 444, 492
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 229, 379, 441, 489
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 8 cut(s) 55, 128, 242, 410, 680, 827, 884, 972
BstNI CCWGG 2 cut(s) 448, 919
BstNSI RCATGY 2 cut(s) 350, 436
BstSCI CCNGG 2 cut(s) 446, 917
BstSFI CTRYAG 2 cut(s) 699, 774
BstSNI TACGTA 1 cut(s) 328
BstUI CGCG 2 cut(s) 131, 827
BstV1I GCAGC 4 cut(s) 36, 58, 658, 788
Bsu15I ATCGAT 1 cut(s) 979
BsuI GTATCC 1 cut(s) 542
BsuRI GGCC 5 cut(s) 92, 357, 830, 951, 975
BsuTUI ATCGAT 1 cut(s) 979
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 809
BtsCI GGATG 1 cut(s) 379
BtsI GCAGTG 2 cut(s) 759, 837
BtsIMutI CAGTG 2 cut(s) 759, 837
BtuMI TCGCGA 1 cut(s) 131
Cac8I GCNNGC 6 cut(s) 60, 402, 630, 676, 880, 1021
CfoI GCGC 2 cut(s) 303, 1033
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 2 cut(s) 38, 973
ClaI ATCGAT 1 cut(s) 979
CsiI ACCWGGT 1 cut(s) 917
CviAII CATG 5 cut(s) 284, 347, 433, 832, 862
DdeI CTNAG 4 cut(s) 6, 42, 87, 1009
DpnI GATC 4 cut(s) 231, 381, 443, 491
DpnII GATC 4 cut(s) 229, 379, 441, 489
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 2 cut(s) 390, 747
EarI CTCTTC 2 cut(s) 390, 747
Eco105I TACGTA 1 cut(s) 328
Eco130I CCWWGG 3 cut(s) 206, 544, 831
Eco47I GGWCC 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 446, 917
EcoT14I CCWWGG 3 cut(s) 206, 544, 831
ErhI CCWWGG 3 cut(s) 206, 544, 831
FaeI CATG 5 cut(s) 287, 350, 436, 835, 865
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 2 cut(s) 570, 731
FatI CATG 5 cut(s) 283, 346, 432, 831, 861
FauI CCCGC 1 cut(s) 621
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 47, 50, 672, 777, 828
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 5 cut(s) 47, 50, 672, 777, 828
FspBI CTAG 2 cut(s) 521, 1016
FspI TGCGCA 2 cut(s) 302, 1032
GlaI GCGC 2 cut(s) 302, 1032
GluI GCNGC 5 cut(s) 47, 50, 672, 777, 828
GsuI CTGGAG 4 cut(s) 275, 458, 466, 966
HaeIII GGCC 5 cut(s) 92, 357, 830, 951, 975
HapII CCGG 2 cut(s) 501, 888
HhaI GCGC 2 cut(s) 303, 1033
Hin1II CATG 5 cut(s) 287, 350, 436, 835, 865
Hin6I GCGC 2 cut(s) 301, 1031
HinP1I GCGC 2 cut(s) 301, 1031
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 3 cut(s) 56, 153, 411
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 501, 888
Hpy166II GTNNAC 3 cut(s) 271, 331, 352
Hpy188I TCNGA 4 cut(s) 143, 384, 537, 605
Hpy188III TCNNGA 6 cut(s) 41, 130, 248, 424, 483, 945
Hpy8I GTNNAC 3 cut(s) 271, 331, 352
Hpy99I CGWCG 3 cut(s) 356, 992, 1007
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 327, 987
HpyCH4V TGCA 5 cut(s) 150, 287, 526, 620, 776
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 128, 242, 410, 680, 827, 884, 972
HpyF3I CTNAG 4 cut(s) 6, 42, 87, 1009
HpySE526I ACGT 2 cut(s) 327, 987
Hsp92II CATG 5 cut(s) 287, 350, 436, 835, 865
HspAI GCGC 2 cut(s) 301, 1031
Kzo9I GATC 4 cut(s) 229, 379, 441, 489
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 202, 890
Lsp1109I GCAGC 4 cut(s) 36, 58, 658, 788
LweI GCATC 5 cut(s) 476, 629, 751, 788, 1042
MabI ACCWGGT 1 cut(s) 917
MaeI CTAG 2 cut(s) 521, 1016
MaeII ACGT 2 cut(s) 327, 987
MaeIII GTNAC 4 cut(s) 158, 643, 835, 983
MalI GATC 4 cut(s) 231, 381, 443, 491
MboI GATC 4 cut(s) 229, 379, 441, 489
MboII GAAGA 5 cut(s) 407, 527, 581, 590, 734
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 4 cut(s) 69, 783, 908, 1026
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 82, 149, 750, 833, 941, 967
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 6 cut(s) 18, 96, 213, 639, 854, 1045
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 501, 888
MspR9I CCNGG 2 cut(s) 448, 919
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 2 cut(s) 448, 919
MvnI CGCG 2 cut(s) 131, 827
MwoI GCNNNNNNNGC 8 cut(s) 55, 128, 242, 410, 680, 827, 884, 972
NcoI CCATGG 1 cut(s) 831
NdeII GATC 4 cut(s) 229, 379, 441, 489
NlaIII CATG 5 cut(s) 287, 350, 436, 835, 865
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 835
NruI TCGCGA 1 cut(s) 131
NsbI TGCGCA 2 cut(s) 302, 1032
NspI RCATGY 2 cut(s) 350, 436
NspV TTCGAA 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 5 cut(s) 48, 51, 673, 778, 829
Ple19I CGATCG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 446, 917
PspGI CCWGG 2 cut(s) 446, 917
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 38, 973
PstI CTGCAG 1 cut(s) 778
PvuI CGATCG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 49
RruI TCGCGA 1 cut(s) 131
SalI GTCGAC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 6 cut(s) 18, 96, 213, 639, 854, 1045
SatI GCNGC 5 cut(s) 47, 50, 672, 777, 828
Sau3AI GATC 4 cut(s) 229, 379, 441, 489
Sau96I GGNCC 2 cut(s) 38, 973
ScrFI CCNGG 2 cut(s) 448, 919
SduI GDGCHC 1 cut(s) 968
SexAI ACCWGGT 1 cut(s) 917
SfaNI GCATC 5 cut(s) 476, 629, 751, 788, 1042
SfcI CTRYAG 2 cut(s) 699, 774
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 38
SnaBI TACGTA 1 cut(s) 328
SpeI ACTAGT 1 cut(s) 520
Sse9I AATT 4 cut(s) 69, 783, 908, 1026
SsiI CCGC 4 cut(s) 52, 628, 648, 827
SspI AATATT 2 cut(s) 615, 637
SspMI CTAG 2 cut(s) 521, 1016
StyD4I CCNGG 2 cut(s) 446, 917
StyI CCWWGG 3 cut(s) 206, 544, 831
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 330, 990
TaqI TCGA 3 cut(s) 351, 567, 979
TaqII GACCGA 1 cut(s) 26
TasI AATT 4 cut(s) 69, 783, 908, 1026
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 6 cut(s) 18, 96, 213, 639, 854, 1045
Tru9I TTAA 6 cut(s) 18, 96, 213, 639, 854, 1045
TscAI CASTG 2 cut(s) 759, 844
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 4 cut(s) 46, 49, 671, 776
Tsp45I GTSAC 1 cut(s) 835
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 2 cut(s) 759, 844
VpaK11BI GGWCC 1 cut(s) 38
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 1 cut(s) 908
XceI RCATGY 2 cut(s) 350, 436
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 2 cut(s) 521, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.