RLG00000019198

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018091
Physical Location & Seq
Forward (+)
48121702 .. 48134824
13123 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019198

Sequence Viewer

Length: 1035 bp
ATGGCCGACTTACCTGTGCTCACTATTCAGCAGCTGCATACGGTTGCTCGTCTGGTTTACCTACAAGAAGAGCAGGCCATTAACGGTATCAAATTCGAATCTGAACCCTCATTAGTGAAATACCTCCAGAACTGCAAAGCTTGTTACGACTCCGTGGTAGCATTTTTGAATGAGGCTAGTTCGTTAGAGCATGAGTATCCAGACAACAGCACCAAGGCTCCTATAGCTTCAGACATCTTTAGTTATATGGTGAGCGGTGCCAACTTTGCAGTCCAGGTGGTGAAGAACTATACTCTTCGAATGGATTACATAAAGAAAATAGGAGATTGCTCCAGAGAGATTCGCAATGAACTGGCTAAGGAGGCGGACAACAATGTGATTGAAATTAAGAGACTAGCTAAGGATGCTCACGACTTCAGGATCATGGGGCTGGAATTCATCACCAAGGGTCAAGTATCACCTGTATCACACGAATTCCTTAAATGGCTCAAGGAGAGCGGCCTCAAGTTTATGGACCTAATACAAATGTATCAAAACAAGGGGAACTACATTGGACTGTTCAAGGATCTGAAAGATGTAGTAAAGATTCAGGTATACGGGGATATACTAGAGGCAGCTGGGAGACCAAGATTTCGGTTCAACATGAAGAGTATTGGTCGTGCTAGCACAATCTTCATACTTTTTACTGTTGGATTTATGGTGTGGGATCTGTTTACAGATGATTGCGACGTGATTCAAACGGCAACTCGTGATATTGTGGTGACTTTAGCATCAGTTGGTGGTGCCCTGGTATCAGAATTTGTTGGAGTTACACTAGCATATGCTGCCGGGCTAAGTGCTGGCATGCCGTTGATGGCTGGATTAATAGTTGGCTTTGCAGGAGCTTTTATCATTGGAGAATTCACTGGTTGGTTGATCGATTCCATGTTTGCAGGAACTTATGACACTTTAAGCACAGAGGGCCATCGATTTTACGTAGCAGAGTTACCTGATGGCGAGGCTCTTGCTCGTCAACTTGTGCATCAGAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.3

Weight (kDa)

5.25

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018091)

Species Orthologous Gene IDs
malus_domestica MD09G1162800.v1.1 MD10G1107800.v1.1 MD17G1147800.v1.1
pyrus_communis pycom09g08030
rosa_laevigata RLG00000019198
rosa_multiflora Rmu_sc0001516.1_g000062 Rmu_sc0001516.1_g000068
rosa_roxburghii Rroxscaffold_1G00006390
rosa_samantha Rh2AG462000 Rh2AG462300 Rh2CG449000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 257, 782
AccBSI CCGCTC 2 cut(s) 255, 498
AccI GTMKAC 1 cut(s) 594
AciI CCGC 3 cut(s) 255, 365, 498
AclWI GGATC 3 cut(s) 428, 573, 714
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 92, 434, 473, 797, 899
AcuI CTGAAG 2 cut(s) 213, 400
AgsI TTSAA 5 cut(s) 169, 383, 562, 640, 737
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 2 cut(s) 273, 786
AluBI AGCT 6 cut(s) 34, 140, 227, 398, 617, 884
AluI AGCT 6 cut(s) 34, 140, 227, 398, 617, 884
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 385, 616
AlwI GGATC 3 cut(s) 428, 573, 714
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 4 cut(s) 3, 75, 499, 961
ApeKI GCWGC 4 cut(s) 31, 34, 614, 824
ApoI RAATTY 5 cut(s) 92, 434, 473, 797, 899
ArsI GACNNNNNNTTYG 2 cut(s) 615, 647
AseI ATTAAT 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 514, 961
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 5 cut(s) 262, 292, 433, 450, 772
AsuII TTCGAA 2 cut(s) 96, 298
AsuNHI GCTAGC 1 cut(s) 662
AvaII GGWCC 1 cut(s) 514
BaeGI GKGCMC 1 cut(s) 787
BaeI ACNNNNGTAYC 2 cut(s) 512, 545
BanI GGYRCC 2 cut(s) 257, 782
BauI CACGAG 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 21, 43, 626, 811
BccI CCATC 3 cut(s) 847, 972, 986
BceAI ACGGC 2 cut(s) 756, 832
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 2 cut(s) 275, 788
BciVI GTATCC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 385, 616
BfaI CTAG 5 cut(s) 177, 395, 608, 663, 815
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 5 cut(s) 32, 35, 499, 615, 825
BlsI GCNGC 5 cut(s) 33, 36, 500, 616, 826
Bme1390I CCNGG 3 cut(s) 275, 788, 829
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 514, 961
BmiI GGNNCC 3 cut(s) 219, 259, 784
BmrFI CCNGG 3 cut(s) 275, 788, 829
BmsI GCATC 3 cut(s) 394, 779, 1030
BmtI GCTAGC 1 cut(s) 666
BpmI CTGGAG 2 cut(s) 110, 316
Bpu10I CCTNAGC 2 cut(s) 357, 399
Bpu14I TTCGAA 2 cut(s) 96, 298
BpuEI CTTGAG 2 cut(s) 473, 488
BpuMI CCSGG 1 cut(s) 829
Bsa29I ATCGAT 2 cut(s) 918, 967
BsaAI YACGTR 1 cut(s) 976
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 4 cut(s) 153, 213, 444, 786
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bse1I ACTGG 2 cut(s) 357, 910
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 2 cut(s) 275, 788
BseCI ATCGAT 2 cut(s) 918, 967
BseDI CCNNGG 4 cut(s) 153, 213, 444, 786
BseGI GGATG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 352
BseNI ACTGG 2 cut(s) 357, 910
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 4 cut(s) 21, 43, 626, 811
BseYI CCCAGC 1 cut(s) 617
BshFI GGCC 4 cut(s) 5, 77, 501, 963
BshNI GGYRCC 2 cut(s) 257, 782
BshVI ATCGAT 2 cut(s) 918, 967
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 828
BsmAI GTCTC 2 cut(s) 385, 616
BsnI GGCC 4 cut(s) 5, 77, 501, 963
Bso31I GGTCTC 1 cut(s) 616
Bsp119I TTCGAA 2 cut(s) 96, 298
Bsp1286I GDGCHC 2 cut(s) 21, 787
Bsp143I GATC 4 cut(s) 420, 565, 706, 915
BspACI CCGC 3 cut(s) 255, 365, 498
BspANI GGCC 4 cut(s) 5, 77, 501, 963
BspDI ATCGAT 2 cut(s) 918, 967
BspLI GGNNCC 3 cut(s) 219, 259, 784
BspOI GCTAGC 1 cut(s) 666
BspPI GGATC 3 cut(s) 428, 573, 714
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 2 cut(s) 96, 298
BspT107I GGYRCC 2 cut(s) 257, 782
BspTNI GGTCTC 1 cut(s) 616
BsrBI CCGCTC 2 cut(s) 255, 498
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 2 cut(s) 357, 910
BssECI CCNNGG 4 cut(s) 153, 213, 444, 786
BssMI GATC 4 cut(s) 420, 565, 706, 915
BssNAI GTATAC 1 cut(s) 595
BssSI CACGAG 1 cut(s) 747
BssT1I CCWWGG 2 cut(s) 213, 444
Bst1107I GTATAC 1 cut(s) 595
Bst2BI CACGAG 1 cut(s) 747
Bst2UI CCWGG 2 cut(s) 275, 788
Bst4CI ACNGT 4 cut(s) 43, 86, 558, 688
Bst6I CTCTTC 3 cut(s) 63, 300, 641
BstAPI GCANNNNNTGC 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 976
BstBI TTCGAA 2 cut(s) 96, 298
BstC8I GCNNGC 4 cut(s) 75, 664, 841, 845
BstDEI CTNAG 3 cut(s) 357, 399, 833
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 4 cut(s) 423, 568, 709, 918
BstMAI GTCTC 2 cut(s) 385, 616
BstMBI GATC 4 cut(s) 420, 565, 706, 915
BstMWI GCNNNNNNNGC 6 cut(s) 224, 266, 362, 404, 824, 960
BstNI CCWGG 2 cut(s) 275, 788
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 3 cut(s) 273, 786, 827
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 787
BstSNI TACGTA 1 cut(s) 976
BstV1I GCAGC 4 cut(s) 21, 43, 626, 811
BstX2I RGATCY 2 cut(s) 565, 706
BstYI RGATCY 2 cut(s) 565, 706
BstZ17I GTATAC 1 cut(s) 595
Bsu15I ATCGAT 2 cut(s) 918, 967
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 4 cut(s) 5, 77, 501, 963
BsuTUI ATCGAT 2 cut(s) 918, 967
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 903
Cac8I GCNNGC 4 cut(s) 75, 664, 841, 845
CaiI CAGNNNCTG 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 514, 961
ClaI ATCGAT 2 cut(s) 918, 967
CviAII CATG 5 cut(s) 191, 424, 643, 844, 925
DdeI CTNAG 3 cut(s) 357, 399, 833
DpnI GATC 4 cut(s) 422, 567, 708, 917
DpnII GATC 4 cut(s) 420, 565, 706, 915
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 63, 300, 641
EarI CTCTTC 3 cut(s) 63, 300, 641
EciI GGCGGA 1 cut(s) 380
Eco105I TACGTA 1 cut(s) 976
Eco130I CCWWGG 2 cut(s) 213, 444
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 514
Eco57I CTGAAG 2 cut(s) 213, 400
EcoRI GAATTC 3 cut(s) 434, 473, 899
EcoRII CCWGG 2 cut(s) 273, 786
EcoT14I CCWWGG 2 cut(s) 213, 444
ErhI CCWWGG 2 cut(s) 213, 444
FaeI CATG 5 cut(s) 194, 427, 646, 847, 928
FatI CATG 5 cut(s) 190, 423, 642, 843, 924
FauNDI CATATG 1 cut(s) 820
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 5 cut(s) 32, 35, 499, 615, 825
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 5 cut(s) 32, 35, 499, 615, 825
FspBI CTAG 5 cut(s) 177, 395, 608, 663, 815
GluI GCNGC 5 cut(s) 32, 35, 499, 615, 825
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 2 cut(s) 110, 316
HaeIII GGCC 4 cut(s) 5, 77, 501, 963
HapII CCGG 1 cut(s) 828
Hin1II CATG 5 cut(s) 194, 427, 646, 847, 928
HincII GTYRAC 1 cut(s) 1013
HindII GTYRAC 1 cut(s) 1013
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 6 cut(s) 98, 149, 340, 586, 733, 920
HpaII CCGG 1 cut(s) 828
HphI GGTGA 5 cut(s) 262, 292, 433, 450, 772
Hpy166II GTNNAC 4 cut(s) 58, 595, 714, 1013
Hpy188I TCNGA 5 cut(s) 103, 232, 570, 796, 1026
Hpy188III TCNNGA 6 cut(s) 127, 200, 333, 410, 418, 749
Hpy8I GTNNAC 4 cut(s) 58, 595, 714, 1013
Hpy99I CGWCG 1 cut(s) 731
HpyCH4III ACNGT 4 cut(s) 43, 86, 558, 688
HpyCH4IV ACGT 2 cut(s) 729, 975
HpyCH4V TGCA 6 cut(s) 37, 135, 269, 878, 932, 1021
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 266, 362, 404, 824, 960
HpyF3I CTNAG 3 cut(s) 357, 399, 833
HpySE526I ACGT 2 cut(s) 729, 975
Hsp92II CATG 5 cut(s) 194, 427, 646, 847, 928
Kzo9I GATC 4 cut(s) 420, 565, 706, 915
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 3 cut(s) 223, 335, 881
Lsp1109I GCAGC 4 cut(s) 21, 43, 626, 811
LweI GCATC 3 cut(s) 394, 779, 1030
MaeI CTAG 5 cut(s) 177, 395, 608, 663, 815
MaeII ACGT 2 cut(s) 729, 975
MaeIII GTNAC 4 cut(s) 143, 760, 808, 984
MalI GATC 4 cut(s) 422, 567, 708, 917
MbiI CCGCTC 2 cut(s) 255, 498
MboI GATC 4 cut(s) 420, 565, 706, 915
MboII GAAGA 5 cut(s) 80, 287, 295, 658, 664
MflI RGATCY 2 cut(s) 565, 706
MhlI GDGCHC 2 cut(s) 21, 787
MluCI AATT 7 cut(s) 92, 384, 434, 473, 797, 899, 1030
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 670, 784
MnlI CCTC 8 cut(s) 118, 134, 166, 355, 512, 604, 952, 991
MseI TTAA 5 cut(s) 81, 387, 480, 863, 950
MspA1I CMGCKG 2 cut(s) 34, 617
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 3 cut(s) 275, 788, 829
MvaI CCWGG 2 cut(s) 275, 788
MwoI GCNNNNNNNGC 6 cut(s) 224, 266, 362, 404, 824, 960
NciI CCSGG 1 cut(s) 829
NdeI CATATG 1 cut(s) 820
NdeII GATC 4 cut(s) 420, 565, 706, 915
NheI GCTAGC 1 cut(s) 662
NlaIII CATG 5 cut(s) 194, 427, 646, 847, 928
NlaIV GGNNCC 3 cut(s) 219, 259, 784
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 1 cut(s) 847
NspV TTCGAA 2 cut(s) 96, 298
PaeI GCATGC 1 cut(s) 847
PciSI GCTCTTC 1 cut(s) 63
PfeI GAWTC 5 cut(s) 98, 340, 586, 733, 920
PkrI GCNGC 5 cut(s) 33, 36, 500, 616, 826
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 976
PshBI ATTAAT 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 273, 786
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 273, 786
PspN4I GGNNCC 3 cut(s) 219, 259, 784
PspPI GGNCC 2 cut(s) 514, 961
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 2 cut(s) 565, 706
PvuII CAGCTG 2 cut(s) 34, 617
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 5 cut(s) 81, 387, 480, 863, 950
SatI GCNGC 5 cut(s) 32, 35, 499, 615, 825
Sau3AI GATC 4 cut(s) 420, 565, 706, 915
Sau96I GGNCC 2 cut(s) 514, 961
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 275, 788, 829
SduI GDGCHC 2 cut(s) 21, 787
SfaNI GCATC 3 cut(s) 394, 779, 1030
SfcI CTRYAG 1 cut(s) 222
SfuI TTCGAA 2 cut(s) 96, 298
SinI GGWCC 1 cut(s) 514
SmlI CTYRAG 2 cut(s) 488, 503
SmoI CTYRAG 2 cut(s) 488, 503
SnaBI TACGTA 1 cut(s) 976
SphI GCATGC 1 cut(s) 847
Sse9I AATT 7 cut(s) 92, 384, 434, 473, 797, 899, 1030
SsiI CCGC 3 cut(s) 255, 365, 498
SspMI CTAG 5 cut(s) 177, 395, 608, 663, 815
StyD4I CCNGG 3 cut(s) 273, 786, 827
StyI CCWWGG 2 cut(s) 213, 444
TaaI ACNGT 4 cut(s) 43, 86, 558, 688
TaiI ACGT 2 cut(s) 732, 978
TaqI TCGA 4 cut(s) 96, 298, 918, 967
TasI AATT 7 cut(s) 92, 384, 434, 473, 797, 899, 1030
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 5 cut(s) 98, 340, 586, 733, 920
Tru1I TTAA 5 cut(s) 81, 387, 480, 863, 950
Tru9I TTAA 5 cut(s) 81, 387, 480, 863, 950
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 4 cut(s) 31, 34, 614, 824
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 4 cut(s) 363, 427, 659, 664
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 910
VpaK11BI GGWCC 1 cut(s) 514
VspI ATTAAT 1 cut(s) 863
XapI RAATTY 5 cut(s) 92, 434, 473, 797, 899
XceI RCATGY 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 5 cut(s) 177, 395, 608, 663, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.