Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014296

Physical Location & Seq

Genomic Coordinates Reverse (-)

33789096 .. 33791756

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1243200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGGAAGGCAGAGCAACATATTTATCAAATCTCCTGCAGAATTGCATAGACAAGAAATCCCTTTTGTCTGGCAAGCTTATTCACGCTTTTCTACTACGCCGCAACGGCCTCTTTTCGAATACTTTCCTCTCCAACCGCCTCGTCGAGTTGTACTCGAAGTGCGGCAATATCGAGTACGCACACAGAGTGTTTGATAAAATGCCGCACCCAGACGTCTACTCTTGGAATGCCATATTGGCTGGTTGCTCTAAATTTGGGAGTTTAGGGGATGCTCAGGAGTTGTTTTTGAGAATGCCGGAGCGAAACACTGTTTCGTGGAATACTCTGATTAGTGCCTTGGTTCGACATGGGCAAGAAGAAACGGCATTGGGGGTTTACGATACAATGATTTTGGAGGAATTCATGCCTACCCGGTTCACGTTGGCGAGTGTGTTTAGTGCGTGCGGAGCGTTGTTGGATGTGGAGCATGGTAGGAGATGTCATGGTCTTGTTATCAAAATTGGTCTTGAGGAGAATATCTATGTTGCCAATGCTTTACTCTCCATGTATGCAAAATGTGGACTTATTAGGGACGCGGTTCAGGTTTTTTCTGACATGGATGAGCCTAATGAGGTTACTTTTACAGCTATGATGGGAGGGTTAGCGCAGACGGACAGAGTCATGGAGGCTGTCGAAATGTTTAGAATGATGTGCAGGAAAGGGGTTCGTATTGATTCCATCTCATTGTCGAGCATCTTGGGTGTTTGTGCCAAAGGAGGAGGTGGCGAGTTTGGTGTTGGTGATCAGAATGATGGGATTCCATGTAATGTGAGCGGACAACAAATACATGGGCTTACAATTAAACTTGGATTTGAGGGAGACCTTCATGTGAACAATTCATTGCTCGATCTGTACGCAAAGAATGCGGATATGAATAGTGCCGAGAAGGTTTTTGCTAGTTTACCTGAAGTTAGTAATGTTTCTTGGAATGTCATGATAGCCGGGTATGGCCAGATACACCAGAGTCAGAAAGCTATAGAATATCTGCAAAGGATGCGATCTTGCTGTTTTGAACCAGATGAGGTTACTTATATACACTTGCTTGCAGCATGTGTCAAGTCTGGTGATATAAAAAGTGGACGCAAAATGTTTGATAACATTTCATGTCCAAATGTGAGTTCATGGAATGCCATTCTCTCTGGATATTTCCAGACTGGTGATCATGAGGAGGCGATAAAGCTGTTCAGGGAAATGCAGTTCCAAAATGTACAACCTGATCGAACAACTTTGGCAATTGCCCTCAGCTCCTGTGCCGCAATGGGGCTTCTGGAGGCTGGAAAAGAGGTTCATGCTGCCTCCCAAAAGGCAGCCTTTCATACAGATATATATGTTGCAAGTGGACTTATTGGCATGTATTCAAAGTGTGGTAAGACAGAAATGGCAAAGCATATATTTCATAGTATGCTTGAATTAGATATTGTTTGTTGGAACTCTATGTTGGCAGGCCTTTCACTCAATTCTCAAGATAAGGAAGCTTTCACTTTCTTTAAGCATATGCGGGAAGATGAGATCCTTCCTACCCAATTCACTTATGCTACTGTACTGAGTTGTTGTGCAAAGCTCTCTTCTTCGTTTCAAGGGAAACAGGTTCATGCTCAGATGACAAAGGATGGATATATGAATGATGTCTTTGTAGGAAGTGCTCTCATTGATATGTATTGCAAATGTGGTGATGTGGATGAGGCCCGAAACTTTTTTGATACGATGCCTAGCAAAAATACTGTTACTTGGAATGAAATGATACATGGGTATGCACAAAATGGACGTGGAGATGAGGCCGTTCTGCTTTACAGGGACATGATTGAATTGGGTGAAAAACCTGATGGTATAACTTTTGTTGCTGTTTTGACTGCTTGTAGCCATGCCGGATTGGTCGATGAAGGCATTGACATATTCAATTCAATGGAACAAGAACATAGAGTGGTGCCTGTTTTGGATCATTATACGTGCATTATTGATGCTCTAGGCCGTGCTGGTCGTTTCCATGAAGCAGAAGTCCTAATAGATGAGATGCCATATAAAGATGATCCAGTTATATGGGAGGTTTTGCTTAGCTCTTGCAGGGTTTATGCTAATGTGCGCTTAGCTAAAAGGGCAGCAGATGAACTCTTCCGCTTGACCCCACATAATTCAGCCCCTTATGTGCTTCTCGGCAATATTTATTCTTCTTTAGGAAGATGGGACGAGGCAAGGGAAGTGAGAGATAAAATGAGTGATACACAGGTTGTTAAGGACCCAGGTTATAGCTGGATTGAATACAACAAGGGAGACCGAACTGGTTATGGCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

777

Amino Acids

86.37

Weight (kDa)

5.45

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 148	1.8e-07	PPR repeat family
PPR_2	PF13041	202 - 251	1e-08	PPR repeat family
PPR	PF01535	205 - 235	7.7e-06	PPR repeat
PPR_2	PF13041	319 - 366	2.5e-07	PPR repeat family
PPR_1	PF12854	382 - 412	5.3e-06	PPR repeat
PPR_2	PF13041	383 - 431	9.8e-13	PPR repeat family
PPR	PF01535	387 - 412	2.3e-07	PPR repeat
PPR_2	PF13041	485 - 533	7.2e-09	PPR repeat family
PPR_1	PF12854	560 - 582	3.8e-06	PPR repeat
PPR_2	PF13041	585 - 633	1.3e-11	PPR repeat family
PPR	PF01535	588 - 617	1.1e-07	PPR repeat
E_motif	PF20431	703 - 765	2.3e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20770
fragaria_vesca	FvH4_3g11160
malus_domestica	MD10G1243200.v1.1
prunus_persica	Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1
pyrus_communis	pycom10g20340
rosa_chinensis	RchiOBHm_Chr5g0018061
rosa_laevigata	RLG00000032337
rosa_multiflora	Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059550
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5BG131500 Rh5CG143500 Rh5DG133200
rosa_wichuraiana	Rw5G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	1963
AccBSI	CCGCTC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	575
AclWI	GGATC	3 cut(s)	1543, 1983, 2060
AcoI	YGGCCR	1 cut(s)	988
AcsI	RAATTY	2 cut(s)	251, 398
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	5 cut(s)	152, 176, 893, 1248, 1581
AfiI	CCNNNNNNNGG	1 cut(s)	1299
AgsI	TTSAA	8 cut(s)	1052, 1398, 1448, 1616, 1844, 1936, 1941, 2294
AjiI	CACGTC	1 cut(s)	1805
AjnI	CCWGG	1 cut(s)	2275
AjuI	GAANNNNNNNTTGG	6 cut(s)	218, 250, 1141, 1173, 1460, 1492
AloI	GAACNNNNNNTCC	4 cut(s)	1220, 1252, 1308, 1340
Alw21I	GWGCWC	1 cut(s)	1684
Alw26I	GTCTC	2 cut(s)	852, 2301
AlwI	GGATC	3 cut(s)	1543, 1983, 2060
AlwNI	CAGNNNCTG	1 cut(s)	1287
AoxI	GGCC	6 cut(s)	106, 988, 1483, 1722, 1815, 2005
ApeKI	GCWGC	4 cut(s)	1085, 1331, 1346, 2135
ApoI	RAATTY	2 cut(s)	251, 398
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	646, 2121
AspS9I	GGNCC	2 cut(s)	1723, 2272
AsuC2I	CCSGG	2 cut(s)	412, 982
AsuHPI	GGTGA	5 cut(s)	791, 1115, 1208, 1721, 1862
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	2272
BaeI	ACNNNNGTAYC	4 cut(s)	1772, 1805, 2247, 2280
BalI	TGGCCA	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	1963
Bbv12I	GWGCWC	1 cut(s)	1684
BbvCI	CCTCAGC	1 cut(s)	1280
BbvI	GCAGC	4 cut(s)	1097, 1318, 1358, 2147
BccI	CCATC	6 cut(s)	625, 725, 785, 1643, 1856, 2211
BceAI	ACGGC	4 cut(s)	121, 378, 1802, 1992
BciT130I	CCWGG	1 cut(s)	2277
BclI	TGATCA	2 cut(s)	781, 1198
BcnI	CCSGG	2 cut(s)	412, 982
BcoDI	GTCTC	2 cut(s)	852, 2301
BfaI	CTAG	3 cut(s)	936, 1749, 2003
BfmI	CTRYAG	2 cut(s)	35, 1014
BglI	GCCNNNNNGGC	2 cut(s)	105, 236
BisI	GCNGC	8 cut(s)	100, 163, 203, 1086, 1293, 1332, 1347, 2136
BlpI	GCTNAGC	2 cut(s)	2090, 2122
BlsI	GCNGC	8 cut(s)	101, 164, 204, 1087, 1294, 1333, 1348, 2137
Bme1390I	CCNGG	3 cut(s)	412, 982, 2277
Bme18I	GGWCC	1 cut(s)	2272
BmgBI	CACGTC	1 cut(s)	1805
BmgT120I	GGNCC	2 cut(s)	1723, 2272
BmiI	GGNNCC	2 cut(s)	1965, 2274
BmrFI	CCNGG	3 cut(s)	412, 982, 2277
BmsI	GCATC	6 cut(s)	259, 741, 1023, 1734, 1987, 2040
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	1328
Bpu10I	CCTNAGC	2 cut(s)	273, 1280
Bpu1102I	GCTNAGC	2 cut(s)	2090, 2122
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	2 cut(s)	527, 1485
BpuMI	CCSGG	2 cut(s)	412, 982
BsaAI	YACGTR	1 cut(s)	1986
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	852, 2301
BsaJI	CCNNGG	2 cut(s)	336, 2275
Bsc4I	CCNNNNNNNGG	1 cut(s)	1299
Bse1I	ACTGG	3 cut(s)	1198, 2069, 2320
Bse3DI	GCAATG	2 cut(s)	878, 1302
BseBI	CCWGG	1 cut(s)	2277
BseDI	CCNNGG	2 cut(s)	336, 2275
BseGI	GGATG	6 cut(s)	274, 463, 604, 1038, 1654, 1723
BseLI	CCNNNNNNNGG	1 cut(s)	1299
BseMI	GCAATG	2 cut(s)	878, 1302
BseMII	CTCAG	4 cut(s)	287, 1294, 1574, 1649
BseNI	ACTGG	3 cut(s)	1198, 2069, 2320
BseRI	GAGGAG	3 cut(s)	524, 771, 1220
BseXI	GCAGC	4 cut(s)	1097, 1318, 1358, 2147
BsgI	GTGCAG	1 cut(s)	712
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	6 cut(s)	108, 990, 1485, 1724, 1817, 2007
BshNI	GGYRCC	1 cut(s)	1963
BsiHKAI	GWGCWC	1 cut(s)	1684
BsiSI	CCGG	4 cut(s)	296, 412, 981, 1905
BslFI	GGGAC	3 cut(s)	584, 1847, 2234
BslI	CCNNNNNNNGG	1 cut(s)	1299
BsmAI	GTCTC	2 cut(s)	852, 2301
BsmFI	GGGAC	3 cut(s)	584, 1847, 2234
BsmI	GAATGC	4 cut(s)	232, 297, 907, 1171
BsnI	GGCC	6 cut(s)	108, 990, 1485, 1724, 1817, 2007
Bso31I	GGTCTC	2 cut(s)	852, 2301
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	1684
Bsp1407I	TGTACA	1 cut(s)	1246
Bsp143I	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
Bsp1720I	GCTNAGC	2 cut(s)	2090, 2122
BspANI	GGCC	6 cut(s)	108, 990, 1485, 1724, 1817, 2007
BspCNI	CTCAG	4 cut(s)	286, 1293, 1575, 1648
BspFNI	CGCG	1 cut(s)	575
BspHI	TCATGA	2 cut(s)	972, 1201
BspLI	GGNNCC	2 cut(s)	1965, 2274
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	3 cut(s)	1543, 1983, 2060
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	1963
BspTNI	GGTCTC	2 cut(s)	852, 2301
BsrBI	CCGCTC	1 cut(s)	813
BsrDI	GCAATG	2 cut(s)	878, 1302
BsrGI	TGTACA	1 cut(s)	1246
BsrI	ACTGG	3 cut(s)	1198, 2069, 2320
BssECI	CCNNGG	2 cut(s)	336, 2275
BssMI	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	2277
Bst4CI	ACNGT	3 cut(s)	310, 1579, 1762
Bst6I	CTCTTC	2 cut(s)	1609, 2153
BstACI	GRCGYC	1 cut(s)	213
BstAPI	GCANNNNNTGC	2 cut(s)	902, 1033
BstAUI	TGTACA	1 cut(s)	1246
BstBAI	YACGTR	1 cut(s)	1986
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	4 cut(s)	74, 442, 1083, 1483
BstDEI	CTNAG	6 cut(s)	273, 1280, 1583, 1635, 2090, 2122
BstF5I	GGATG	6 cut(s)	274, 463, 604, 1038, 1654, 1723
BstFNI	CGCG	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	646, 2121
BstKTI	GATC	8 cut(s)	784, 889, 1040, 1201, 1258, 1551, 1978, 2068
BstMAI	GTCTC	2 cut(s)	852, 2301
BstMBI	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 236, 446, 902, 1033, 2132
BstNI	CCWGG	1 cut(s)	2277
BstNSI	RCATGY	2 cut(s)	1092, 1393
BstSCI	CCNGG	3 cut(s)	410, 980, 2275
BstSFI	CTRYAG	2 cut(s)	35, 1014
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	4 cut(s)	1097, 1318, 1358, 2147
BstX2I	RGATCY	1 cut(s)	1548
BstXI	CCANNNNNNTGG	1 cut(s)	2076
BstYI	RGATCY	1 cut(s)	1548
BsuRI	GGCC	6 cut(s)	108, 990, 1485, 1724, 1817, 2007
BtrI	CACGTC	1 cut(s)	1805
BtsCI	GGATG	6 cut(s)	274, 463, 604, 1038, 1654, 1723
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	4 cut(s)	74, 442, 1083, 1483
CaiI	CAGNNNCTG	1 cut(s)	1287
CciI	TCATGA	2 cut(s)	972, 1201
CfoI	GCGC	2 cut(s)	646, 2121
Cfr13I	GGNCC	2 cut(s)	1723, 2272
CseI	GACGC	2 cut(s)	581, 1128
Csp6I	GTAC	5 cut(s)	151, 175, 892, 1247, 1580
CviQI	GTAC	5 cut(s)	151, 175, 892, 1247, 1580
DdeI	CTNAG	6 cut(s)	273, 1280, 1583, 1635, 2090, 2122
DpnI	GATC	8 cut(s)	783, 888, 1039, 1200, 1257, 1550, 1977, 2067
DpnII	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
DraIII	CACNNNGTG	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	988
Eam1104I	CTCTTC	2 cut(s)	1609, 2153
EarI	CTCTTC	2 cut(s)	1609, 2153
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	1485
Eco31I	GGTCTC	2 cut(s)	852, 2301
Eco47I	GGWCC	1 cut(s)	2272
Eco57I	CTGAAG	1 cut(s)	966
EcoO109I	RGGNCCY	1 cut(s)	2272
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	2275
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FalI	AAGNNNNNCTT	2 cut(s)	1334, 1366
FaqI	GGGAC	3 cut(s)	584, 1847, 2234
FauI	CCCGC	2 cut(s)	1530, 2318
FauNDI	CATATG	1 cut(s)	1533
FbaI	TGATCA	2 cut(s)	781, 1198
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	8 cut(s)	100, 163, 203, 1086, 1293, 1332, 1347, 2136
FokI	GGATG	6 cut(s)	281, 470, 611, 1045, 1661, 1730
Fsp4HI	GCNGC	8 cut(s)	100, 163, 203, 1086, 1293, 1332, 1347, 2136
FspBI	CTAG	3 cut(s)	936, 1749, 2003
GlaI	GCGC	2 cut(s)	645, 2120
GluI	GCNGC	8 cut(s)	100, 163, 203, 1086, 1293, 1332, 1347, 2136
GsuI	CTGGAG	1 cut(s)	1328
HaeIII	GGCC	6 cut(s)	108, 990, 1485, 1724, 1817, 2007
HapII	CCGG	4 cut(s)	296, 412, 981, 1905
HgaI	GACGC	2 cut(s)	581, 1128
HhaI	GCGC	2 cut(s)	646, 2121
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	644, 2119
HinP1I	GCGC	2 cut(s)	644, 2119
HindIII	AAGCTT	2 cut(s)	74, 1512
HinfI	GANTC	4 cut(s)	657, 713, 796, 1003
HpaII	CCGG	4 cut(s)	296, 412, 981, 1905
HphI	GGTGA	5 cut(s)	791, 1115, 1208, 1721, 1862
Hpy166II	GTNNAC	8 cut(s)	217, 376, 417, 560, 871, 941, 1118, 1379
Hpy188I	TCNGA	5 cut(s)	327, 592, 786, 1008, 1638
Hpy188III	TCNNGA	8 cut(s)	275, 506, 973, 1179, 1189, 1202, 1307, 1502
Hpy8I	GTNNAC	8 cut(s)	217, 376, 417, 560, 871, 941, 1118, 1379
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	872, 919, 1562, 1913
HpyCH4III	ACNGT	3 cut(s)	310, 1579, 1762
HpyCH4IV	ACGT	4 cut(s)	213, 419, 1804, 1985
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 236, 446, 902, 1033, 2132
HpyF3I	CTNAG	6 cut(s)	273, 1280, 1583, 1635, 2090, 2122
HpySE526I	ACGT	4 cut(s)	213, 419, 1804, 1985
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	2 cut(s)	644, 2119
Ksp22I	TGATCA	2 cut(s)	781, 1198
Kzo9I	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
LmnI	GCTCC	4 cut(s)	298, 446, 463, 1289
Lsp1109I	GCAGC	4 cut(s)	1097, 1318, 1358, 2147
LweI	GCATC	6 cut(s)	259, 741, 1023, 1734, 1987, 2040
MaeI	CTAG	3 cut(s)	936, 1749, 2003
MaeII	ACGT	4 cut(s)	213, 419, 1804, 1985
MaeIII	GTNAC	3 cut(s)	613, 1063, 1762
MalI	GATC	8 cut(s)	783, 888, 1039, 1200, 1257, 1550, 1977, 2067
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
MboII	GAAGA	7 cut(s)	368, 1553, 1596, 1599, 2140, 2196, 2226
MfeI	CAATTG	1 cut(s)	1272
MflI	RGATCY	1 cut(s)	1548
MhlI	GDGCHC	1 cut(s)	1684
MlsI	TGGCCA	1 cut(s)	990
MluNI	TGGCCA	1 cut(s)	990
MlyI	GAGTC	2 cut(s)	666, 1012
MmeI	TCCRAC	3 cut(s)	156, 435, 1445
Mox20I	TGGCCA	1 cut(s)	990
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	990
MseI	TTAA	3 cut(s)	840, 1527, 2268
MslI	CAYNNNNRTG	2 cut(s)	1691, 1788
Msp20I	TGGCCA	1 cut(s)	990
MspI	CCGG	4 cut(s)	296, 412, 981, 1905
MspR9I	CCNGG	3 cut(s)	412, 982, 2277
MunI	CAATTG	1 cut(s)	1272
Mva1269I	GAATGC	4 cut(s)	232, 297, 907, 1171
MvaI	CCWGG	1 cut(s)	2277
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	6 cut(s)	105, 236, 446, 902, 1033, 2132
NciI	CCSGG	2 cut(s)	412, 982
NdeI	CATATG	1 cut(s)	1533
NdeII	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
NlaIV	GGNNCC	2 cut(s)	1965, 2274
NmeAIII	GCCGAG	2 cut(s)	946, 2169
NspI	RCATGY	2 cut(s)	1092, 1393
NspV	TTCGAA	1 cut(s)	116
PagI	TCATGA	2 cut(s)	972, 1201
PceI	AGGCCT	1 cut(s)	1485
PctI	GAATGC	4 cut(s)	232, 297, 907, 1171
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	713, 796
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	8 cut(s)	101, 164, 204, 1087, 1294, 1333, 1348, 2137
PleI	GAGTC	2 cut(s)	665, 1011
PpsI	GAGTC	2 cut(s)	665, 1011
Ppu21I	YACGTR	1 cut(s)	1986
PpuMI	RGGWCCY	1 cut(s)	2272
Psp5II	RGGWCCY	1 cut(s)	2272
Psp6I	CCWGG	1 cut(s)	2275
PspGI	CCWGG	1 cut(s)	2275
PspN4I	GGNNCC	2 cut(s)	1965, 2274
PspPI	GGNCC	2 cut(s)	1723, 2272
PspPPI	RGGWCCY	1 cut(s)	2272
PstI	CTGCAG	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	1287
PsuI	RGATCY	1 cut(s)	1548
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	5 cut(s)	152, 176, 893, 1248, 1581
RsaNI	GTAC	5 cut(s)	151, 175, 892, 1247, 1580
RseI	CAYNNNNRTG	2 cut(s)	1691, 1788
SaqAI	TTAA	3 cut(s)	840, 1527, 2268
SatI	GCNGC	8 cut(s)	100, 163, 203, 1086, 1293, 1332, 1347, 2136
Sau3AI	GATC	8 cut(s)	781, 886, 1037, 1198, 1255, 1548, 1975, 2065
Sau96I	GGNCC	2 cut(s)	1723, 2272
SchI	GAGTC	2 cut(s)	666, 1012
ScrFI	CCNGG	3 cut(s)	412, 982, 2277
SduI	GDGCHC	1 cut(s)	1684
SfaNI	GCATC	6 cut(s)	259, 741, 1023, 1734, 1987, 2040
SfcI	CTRYAG	2 cut(s)	35, 1014
SfuI	TTCGAA	1 cut(s)	116
SinI	GGWCC	1 cut(s)	2272
SmiMI	CAYNNNNRTG	2 cut(s)	1691, 1788
SmlI	CTYRAG	2 cut(s)	506, 1500
SmoI	CTYRAG	2 cut(s)	506, 1500
SseBI	AGGCCT	1 cut(s)	1485
SspI	AATATT	1 cut(s)	2197
SspMI	CTAG	3 cut(s)	936, 1749, 2003
StuI	AGGCCT	1 cut(s)	1485
StyD4I	CCNGG	3 cut(s)	410, 980, 2275
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	310, 1579, 1762
TaiI	ACGT	4 cut(s)	216, 422, 1807, 1988
TaqII	GACCGA	1 cut(s)	2325
TatI	WGTACW	3 cut(s)	150, 1246, 1579
TauI	GCSGC	4 cut(s)	102, 165, 205, 1295
TfiI	GAWTC	2 cut(s)	713, 796
Tru1I	TTAA	3 cut(s)	840, 1527, 2268
Tru9I	TTAA	3 cut(s)	840, 1527, 2268
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	4 cut(s)	1085, 1331, 1346, 2135
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	313
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	2272
XapI	RAATTY	2 cut(s)	251, 398
XceI	RCATGY	2 cut(s)	1092, 1393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2283
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	3 cut(s)	936, 1749, 2003
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.