Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026609.1

Orthogroup ID

OG0014296

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 489

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

atggaaggagggactacacggttagctaagctattgcagggttgtatagacaagaaggcccaattgggcgggaaggttattcatgggtttatattacgtaataaaggcttgtactttgatacgtttctatctaatagactcattgagttgtactcaaagtgtggtcatttgggttatgcccaccaggtgtttgataaaatgcctaagccggatgtgtactcgtggaatgcggtgttgggttgttattgtaaagctgggaggttgggcgatgcggaggagttgtttctgaaaatgcctgagaggaatgttgtgtcttggaacactctgattactactttggcccgaaatggtcaggaggaaaaggcggtggatgtttatgaggcgatggtttcggaggggttggtgccaacgcattttacgttggcgagtgtgttcagtgcgtgtggagggttgttggatgtggagaaggggaggaaatgtcatggggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

8.51

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20770
fragaria_vesca	FvH4_3g11160
malus_domestica	MD10G1243200.v1.1
prunus_persica	Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1
pyrus_communis	pycom10g20340
rosa_chinensis	RchiOBHm_Chr5g0018061
rosa_laevigata	RLG00000032337
rosa_multiflora	Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059550
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5BG131500 Rh5CG143500 Rh5DG133200
rosa_wichuraiana	Rw5G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AciI	CCGC	4 cut(s)	69, 230, 272, 365
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	113, 152, 218
AjnI	CCWGG	1 cut(s)	183
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 218, 250
AluBI	AGCT	3 cut(s)	26, 31, 254
AluI	AGCT	3 cut(s)	26, 31, 254
AoxI	GGCC	2 cut(s)	57, 339
AspS9I	GGNCC	2 cut(s)	58, 340
BanI	GGYRCC	1 cut(s)	403
BauI	CACGAG	1 cut(s)	220
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	185
BlpI	GCTNAGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	58, 340
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	98
BsaXI	ACNNNNNCTCC	3 cut(s)	266, 296, 463
BseBI	CCWGG	1 cut(s)	185
BseGI	GGATG	3 cut(s)	217, 376, 463
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	2 cut(s)	59, 341
BshNI	GGYRCC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	59, 341
Bsp1720I	GCTNAGC	1 cut(s)	27
BspACI	CCGC	4 cut(s)	69, 230, 272, 365
BspANI	GGCC	2 cut(s)	59, 341
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	27, 204, 297
BstF5I	GGATG	3 cut(s)	217, 376, 463
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSNI	TACGTA	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	59, 341
BtgZI	GCGATG	2 cut(s)	282, 398
BtsCI	GGATG	3 cut(s)	217, 376, 463
BtsIMutI	CAGTG	1 cut(s)	442
Cfr13I	GGNCC	2 cut(s)	58, 340
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	112, 151, 217
CviAII	CATG	2 cut(s)	83, 482
CviJI	RGCY	7 cut(s)	26, 31, 59, 108, 208, 254, 341
CviKI_1	RGCY	7 cut(s)	26, 31, 59, 108, 208, 254, 341
CviQI	GTAC	3 cut(s)	112, 151, 217
DdeI	CTNAG	3 cut(s)	27, 204, 297
DraIII	CACNNNGTG	1 cut(s)	187
Eco105I	TACGTA	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	86, 485
FaiI	YATR	6 cut(s)	47, 84, 92, 177, 378, 483
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	2 cut(s)	82, 481
FauI	CCCGC	1 cut(s)	62
FokI	GGATG	3 cut(s)	224, 383, 470
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	59, 341
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	2 cut(s)	86, 485
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	288, 327, 394
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	49, 67, 460
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	3 cut(s)	97, 122, 419
HpyCH4V	TGCA	1 cut(s)	37
HpyF3I	CTNAG	3 cut(s)	27, 204, 297
HpySE526I	ACGT	3 cut(s)	97, 122, 419
Hsp92II	CATG	2 cut(s)	86, 485
LpnPI	CCDG	7 cut(s)	23, 170, 197, 222, 240, 309, 338
LweI	GCATC	1 cut(s)	259
MabI	ACCWGGT	1 cut(s)	183
MaeII	ACGT	3 cut(s)	97, 122, 419
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	252, 268, 294, 349, 373, 388, 440, 465
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	185
NlaIII	CATG	2 cut(s)	86, 485
NlaIV	GGNNCC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	58, 340
RsaI	GTAC	3 cut(s)	113, 152, 218
RsaNI	GTAC	3 cut(s)	112, 151, 217
Sau96I	GGNCC	2 cut(s)	58, 340
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	9 cut(s)	28, 33, 78, 100, 125, 189, 256, 263, 422
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	259
SnaBI	TACGTA	1 cut(s)	98
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	4 cut(s)	69, 230, 272, 365
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	3 cut(s)	100, 125, 422
TasI	AATT	1 cut(s)	62
TatI	WGTACW	3 cut(s)	111, 150, 216
TscAI	CASTG	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.