Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20770 |
| fragaria_vesca | FvH4_3g11160 |
| malus_domestica | MD10G1243200.v1.1 |
| prunus_persica | Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1 |
| pyrus_communis | pycom10g20340 |
| rosa_chinensis | RchiOBHm_Chr5g0018061 |
| rosa_laevigata | RLG00000032337 |
| rosa_multiflora | Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00059550 |
| rosa_rugosa | Rorug05G0040100 |
| rosa_samantha | Rh5BG131500 Rh5CG143500 Rh5DG133200 |
| rosa_wichuraiana | Rw5G011580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 292 |
| AccB1I | GGYRCC | 1 cut(s) | 124 |
| AccI | GTMKAC | 1 cut(s) | 373 |
| AciI | CCGC | 4 cut(s) | 69, 86, 338, 1243 |
| AclWI | GGATC | 5 cut(s) | 622, 1074, 1151, 1358, 1371 |
| AcoI | YGGCCR | 2 cut(s) | 1096, 1281 |
| AcsI | RAATTY | 1 cut(s) | 820 |
| AcuI | CTGAAG | 1 cut(s) | 399 |
| AcyI | GRCGYC | 1 cut(s) | 954 |
| AfaI | GTAC | 2 cut(s) | 850, 1388 |
| AgsI | TTSAA | 4 cut(s) | 485, 702, 1019, 1032 |
| AjiI | CACGTC | 1 cut(s) | 896 |
| AjnI | CCWGG | 1 cut(s) | 1366 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 47, 79, 457, 489 |
| Alw21I | GWGCWC | 1 cut(s) | 775 |
| Alw26I | GTCTC | 1 cut(s) | 940 |
| AlwI | GGATC | 5 cut(s) | 622, 1074, 1151, 1358, 1371 |
| AoxI | GGCC | 6 cut(s) | 57, 223, 421, 813, 1096, 1281 |
| ApaI | GGGCCC | 1 cut(s) | 817 |
| ApeKI | GCWGC | 5 cut(s) | 596, 635, 650, 987, 1226 |
| ApoI | RAATTY | 1 cut(s) | 820 |
| AspLEI | GCGC | 1 cut(s) | 683 |
| AspS9I | GGNCC | 4 cut(s) | 58, 813, 814, 1249 |
| AsuC2I | CCSGG | 1 cut(s) | 817 |
| AsuHPI | GGTGA | 2 cut(s) | 226, 812 |
| AvaII | GGWCC | 1 cut(s) | 1249 |
| BaeGI | GKGCMC | 2 cut(s) | 817, 1041 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 863, 896 |
| BalI | TGGCCA | 1 cut(s) | 1283 |
| BamHI | GGATCC | 1 cut(s) | 1363 |
| BanI | GGYRCC | 1 cut(s) | 124 |
| BanII | GRGCYC | 1 cut(s) | 817 |
| BbsI | GAAGAC | 1 cut(s) | 507 |
| Bbv12I | GWGCWC | 1 cut(s) | 775 |
| BbvCI | CCTCAGC | 1 cut(s) | 937 |
| BbvI | GCAGC | 5 cut(s) | 608, 622, 637, 999, 1238 |
| BccI | CCATC | 4 cut(s) | 100, 734, 803, 1302 |
| BceAI | ACGGC | 2 cut(s) | 956, 1083 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 542, 576 |
| BciT130I | CCWGG | 1 cut(s) | 1368 |
| BcnI | CCSGG | 1 cut(s) | 817 |
| BcoDI | GTCTC | 1 cut(s) | 940 |
| BfaI | CTAG | 3 cut(s) | 369, 591, 1133 |
| BfmI | CTRYAG | 1 cut(s) | 447 |
| BfuAI | ACCTGC | 1 cut(s) | 292 |
| BglII | AGATCT | 1 cut(s) | 1333 |
| BisI | GCNGC | 5 cut(s) | 597, 636, 651, 988, 1227 |
| BlpI | GCTNAGC | 3 cut(s) | 27, 321, 1213 |
| BlsI | GCNGC | 5 cut(s) | 598, 637, 652, 989, 1228 |
| Bme1390I | CCNGG | 2 cut(s) | 817, 1368 |
| Bme18I | GGWCC | 1 cut(s) | 1249 |
| BmgBI | CACGTC | 1 cut(s) | 896 |
| BmgT120I | GGNCC | 4 cut(s) | 58, 813, 814, 1249 |
| BmiI | GGNNCC | 6 cut(s) | 126, 814, 815, 1056, 1251, 1365 |
| BmrFI | CCNGG | 2 cut(s) | 817, 1368 |
| BmrI | ACTGGG | 1 cut(s) | 423 |
| BmsI | GCATC | 3 cut(s) | 283, 997, 1131 |
| BmuI | ACTGGG | 1 cut(s) | 423 |
| BpiI | GAAGAC | 1 cut(s) | 507 |
| BpmI | CTGGAG | 2 cut(s) | 632, 639 |
| Bpu10I | CCTNAGC | 1 cut(s) | 937 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 27, 321, 1213 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 1 cut(s) | 817 |
| BsaHI | GRCGYC | 1 cut(s) | 954 |
| BsaI | GGTCTC | 1 cut(s) | 940 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 184, 214, 224, 254 |
| Bse118I | RCCGGY | 1 cut(s) | 1057 |
| Bse1I | ACTGG | 3 cut(s) | 418, 1160, 1407 |
| Bse3DI | GCAATG | 2 cut(s) | 303, 606 |
| BseBI | CCWGG | 1 cut(s) | 1368 |
| BseGI | GGATG | 3 cut(s) | 184, 298, 1239 |
| BseMI | GCAATG | 2 cut(s) | 303, 606 |
| BseMII | CTCAG | 6 cut(s) | 312, 345, 598, 740, 933, 951 |
| BseNI | ACTGG | 3 cut(s) | 418, 1160, 1407 |
| BseRI | GAGGAG | 1 cut(s) | 245 |
| BseSI | GKGCMC | 2 cut(s) | 817, 1041 |
| BseXI | GCAGC | 5 cut(s) | 608, 622, 637, 999, 1238 |
| BsgI | GTGCAG | 1 cut(s) | 615 |
| BshFI | GGCC | 6 cut(s) | 59, 225, 423, 815, 1098, 1283 |
| BshNI | GGYRCC | 1 cut(s) | 124 |
| BsiHKAI | GWGCWC | 1 cut(s) | 775 |
| BsiSI | CCGG | 3 cut(s) | 817, 1058, 1378 |
| BslFI | GGGAC | 3 cut(s) | 25, 938, 1325 |
| BsmAI | GTCTC | 1 cut(s) | 940 |
| BsmFI | GGGAC | 3 cut(s) | 25, 938, 1325 |
| BsmI | GAATGC | 3 cut(s) | 256, 471, 1404 |
| BsnI | GGCC | 6 cut(s) | 59, 225, 423, 815, 1098, 1283 |
| Bso31I | GGTCTC | 1 cut(s) | 940 |
| Bsp120I | GGGCCC | 1 cut(s) | 813 |
| Bsp1286I | GDGCHC | 3 cut(s) | 775, 817, 1041 |
| Bsp143I | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 27, 321, 1213 |
| BspACI | CCGC | 4 cut(s) | 69, 86, 338, 1243 |
| BspANI | GGCC | 6 cut(s) | 59, 225, 423, 815, 1098, 1283 |
| BspCNI | CTCAG | 6 cut(s) | 313, 346, 597, 739, 934, 950 |
| BspHI | TCATGA | 1 cut(s) | 405 |
| BspLI | GGNNCC | 6 cut(s) | 126, 814, 815, 1056, 1251, 1365 |
| BspMI | ACCTGC | 1 cut(s) | 292 |
| BspPI | GGATC | 5 cut(s) | 622, 1074, 1151, 1358, 1371 |
| BspT107I | GGYRCC | 1 cut(s) | 124 |
| BspTNI | GGTCTC | 1 cut(s) | 940 |
| BsrDI | GCAATG | 2 cut(s) | 303, 606 |
| BsrFI | RCCGGY | 1 cut(s) | 1057 |
| BsrI | ACTGG | 3 cut(s) | 418, 1160, 1407 |
| BssAI | RCCGGY | 1 cut(s) | 1057 |
| BssMI | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| BssNAI | GTATAC | 1 cut(s) | 374 |
| BssNI | GRCGYC | 1 cut(s) | 954 |
| Bst1107I | GTATAC | 1 cut(s) | 374 |
| Bst2UI | CCWGG | 1 cut(s) | 1368 |
| Bst4CI | ACNGT | 2 cut(s) | 21, 853 |
| Bst6I | CTCTTC | 2 cut(s) | 341, 618 |
| BstACI | GRCGYC | 1 cut(s) | 954 |
| BstC8I | GCNNGC | 3 cut(s) | 679, 985, 1012 |
| BstDEI | CTNAG | 9 cut(s) | 27, 321, 354, 584, 726, 937, 942, 1181, 1213 |
| BstF5I | GGATG | 3 cut(s) | 184, 298, 1239 |
| BstHHI | GCGC | 1 cut(s) | 683 |
| BstKTI | GATC | 6 cut(s) | 562, 630, 1069, 1159, 1336, 1366 |
| BstMAI | GTCTC | 1 cut(s) | 940 |
| BstMBI | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1223 |
| BstNI | CCWGG | 1 cut(s) | 1368 |
| BstNSI | RCATGY | 2 cut(s) | 268, 697 |
| BstSCI | CCNGG | 2 cut(s) | 815, 1366 |
| BstSFI | CTRYAG | 1 cut(s) | 447 |
| BstSLI | GKGCMC | 2 cut(s) | 817, 1041 |
| BstV1I | GCAGC | 5 cut(s) | 608, 622, 637, 999, 1238 |
| BstV2I | GAAGAC | 1 cut(s) | 507 |
| BstX2I | RGATCY | 3 cut(s) | 627, 1333, 1363 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1167, 1414 |
| BstYI | RGATCY | 3 cut(s) | 627, 1333, 1363 |
| BstZ17I | GTATAC | 1 cut(s) | 374 |
| BsuRI | GGCC | 6 cut(s) | 59, 225, 423, 815, 1098, 1283 |
| BtgZI | GCGATG | 2 cut(s) | 119, 768 |
| BtrI | CACGTC | 1 cut(s) | 896 |
| BtsCI | GGATG | 3 cut(s) | 184, 298, 1239 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 316 |
| BveI | ACCTGC | 1 cut(s) | 292 |
| Cac8I | GCNNGC | 3 cut(s) | 679, 985, 1012 |
| CciI | TCATGA | 1 cut(s) | 405 |
| CfoI | GCGC | 1 cut(s) | 683 |
| Cfr10I | RCCGGY | 1 cut(s) | 1057 |
| Cfr13I | GGNCC | 4 cut(s) | 58, 813, 814, 1249 |
| CseI | GACGC | 2 cut(s) | 139, 962 |
| Csp6I | GTAC | 2 cut(s) | 849, 1387 |
| CviQI | GTAC | 2 cut(s) | 849, 1387 |
| DdeI | CTNAG | 9 cut(s) | 27, 321, 354, 584, 726, 937, 942, 1181, 1213 |
| DpnI | GATC | 6 cut(s) | 561, 629, 1068, 1158, 1335, 1365 |
| DpnII | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| EaeI | YGGCCR | 2 cut(s) | 1096, 1281 |
| Eam1104I | CTCTTC | 2 cut(s) | 341, 618 |
| EarI | CTCTTC | 2 cut(s) | 341, 618 |
| Eco24I | GRGCYC | 1 cut(s) | 817 |
| Eco31I | GGTCTC | 1 cut(s) | 940 |
| Eco47I | GGWCC | 1 cut(s) | 1249 |
| Eco57I | CTGAAG | 1 cut(s) | 399 |
| EcoO109I | RGGNCCY | 1 cut(s) | 813 |
| EcoRII | CCWGG | 1 cut(s) | 1366 |
| EcoT38I | GRGCYC | 1 cut(s) | 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 638, 670 |
| FaqI | GGGAC | 3 cut(s) | 25, 938, 1325 |
| FauI | CCCGC | 1 cut(s) | 62 |
| FauNDI | CATATG | 1 cut(s) | 1270 |
| FblI | GTMKAC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 5 cut(s) | 597, 636, 651, 988, 1227 |
| FokI | GGATG | 3 cut(s) | 191, 305, 1226 |
| FriOI | GRGCYC | 1 cut(s) | 817 |
| Fsp4HI | GCNGC | 5 cut(s) | 597, 636, 651, 988, 1227 |
| FspBI | CTAG | 3 cut(s) | 369, 591, 1133 |
| GlaI | GCGC | 1 cut(s) | 682 |
| GluI | GCNGC | 5 cut(s) | 597, 636, 651, 988, 1227 |
| GsuI | CTGGAG | 2 cut(s) | 632, 639 |
| HaeIII | GGCC | 6 cut(s) | 59, 225, 423, 815, 1098, 1283 |
| HapII | CCGG | 3 cut(s) | 817, 1058, 1378 |
| HgaI | GACGC | 2 cut(s) | 139, 962 |
| HhaI | GCGC | 1 cut(s) | 683 |
| Hin1I | GRCGYC | 1 cut(s) | 954 |
| Hin6I | GCGC | 1 cut(s) | 681 |
| HinP1I | GCGC | 1 cut(s) | 681 |
| HindIII | AAGCTT | 1 cut(s) | 521 |
| HinfI | GANTC | 3 cut(s) | 436, 607, 1088 |
| HpaII | CCGG | 3 cut(s) | 817, 1058, 1378 |
| HphI | GGTGA | 2 cut(s) | 226, 812 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 435, 441, 729 |
| Hpy188III | TCNNGA | 4 cut(s) | 406, 611, 996, 1064 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| Hpy99I | CGWCG | 1 cut(s) | 133 |
| HpyAV | CCTTC | 5 cut(s) | 49, 67, 181, 352, 1387 |
| HpyCH4III | ACNGT | 2 cut(s) | 21, 853 |
| HpyCH4IV | ACGT | 2 cut(s) | 140, 895 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1223 |
| HpyF3I | CTNAG | 9 cut(s) | 27, 321, 354, 584, 726, 937, 942, 1181, 1213 |
| HpySE526I | ACGT | 2 cut(s) | 140, 895 |
| Hsp92I | GRCGYC | 1 cut(s) | 954 |
| HspAI | GCGC | 1 cut(s) | 681 |
| Kzo9I | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| LmnI | GCTCC | 2 cut(s) | 1054, 1270 |
| Lsp1109I | GCAGC | 5 cut(s) | 608, 622, 637, 999, 1238 |
| LweI | GCATC | 3 cut(s) | 283, 997, 1131 |
| MaeI | CTAG | 3 cut(s) | 369, 591, 1133 |
| MaeII | ACGT | 2 cut(s) | 140, 895 |
| MaeIII | GTNAC | 3 cut(s) | 311, 853, 1343 |
| MalI | GATC | 6 cut(s) | 561, 629, 1068, 1158, 1335, 1365 |
| MboI | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| MboII | GAAGA | 7 cut(s) | 358, 474, 512, 635, 905, 1287, 1317 |
| MfeI | CAATTG | 2 cut(s) | 62, 576 |
| MflI | RGATCY | 3 cut(s) | 627, 1333, 1363 |
| MhlI | GDGCHC | 3 cut(s) | 775, 817, 1041 |
| MlsI | TGGCCA | 1 cut(s) | 1283 |
| MluCI | AATT | 6 cut(s) | 62, 219, 576, 820, 1027, 1258 |
| MluNI | TGGCCA | 1 cut(s) | 1283 |
| MlyI | GAGTC | 1 cut(s) | 445 |
| MmeI | TCCRAC | 1 cut(s) | 156 |
| Mox20I | TGGCCA | 1 cut(s) | 1283 |
| MscI | TGGCCA | 1 cut(s) | 1283 |
| MseI | TTAA | 1 cut(s) | 1026 |
| MslI | CAYNNNNRTG | 4 cut(s) | 782, 879, 1044, 1203 |
| Msp20I | TGGCCA | 1 cut(s) | 1283 |
| MspA1I | CMGCKG | 2 cut(s) | 941, 1229 |
| MspI | CCGG | 3 cut(s) | 817, 1058, 1378 |
| MspR9I | CCNGG | 2 cut(s) | 817, 1368 |
| MunI | CAATTG | 2 cut(s) | 62, 576 |
| Mva1269I | GAATGC | 3 cut(s) | 256, 471, 1404 |
| MvaI | CCWGG | 1 cut(s) | 1368 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1223 |
| NciI | CCSGG | 1 cut(s) | 817 |
| NdeI | CATATG | 1 cut(s) | 1270 |
| NdeII | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| NlaIV | GGNNCC | 6 cut(s) | 126, 814, 815, 1056, 1251, 1365 |
| NmuCI | GTSAC | 1 cut(s) | 311 |
| NspI | RCATGY | 2 cut(s) | 268, 697 |
| PagI | TCATGA | 1 cut(s) | 405 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 137 |
| PctI | GAATGC | 3 cut(s) | 256, 471, 1404 |
| PfeI | GAWTC | 2 cut(s) | 607, 1088 |
| PkrI | GCNGC | 5 cut(s) | 598, 637, 652, 989, 1228 |
| PleI | GAGTC | 1 cut(s) | 444 |
| PpsI | GAGTC | 1 cut(s) | 444 |
| Psp6I | CCWGG | 1 cut(s) | 1366 |
| PspGI | CCWGG | 1 cut(s) | 1366 |
| PspN4I | GGNNCC | 6 cut(s) | 126, 814, 815, 1056, 1251, 1365 |
| PspOMI | GGGCCC | 1 cut(s) | 813 |
| PspPI | GGNCC | 4 cut(s) | 58, 813, 814, 1249 |
| PsuI | RGATCY | 3 cut(s) | 627, 1333, 1363 |
| PvuII | CAGCTG | 2 cut(s) | 941, 1229 |
| RsaI | GTAC | 2 cut(s) | 850, 1388 |
| RsaNI | GTAC | 2 cut(s) | 849, 1387 |
| RseI | CAYNNNNRTG | 4 cut(s) | 782, 879, 1044, 1203 |
| SaqAI | TTAA | 1 cut(s) | 1026 |
| SatI | GCNGC | 5 cut(s) | 597, 636, 651, 988, 1227 |
| Sau3AI | GATC | 6 cut(s) | 559, 627, 1066, 1156, 1333, 1363 |
| Sau96I | GGNCC | 4 cut(s) | 58, 813, 814, 1249 |
| SchI | GAGTC | 1 cut(s) | 445 |
| ScrFI | CCNGG | 2 cut(s) | 817, 1368 |
| SduI | GDGCHC | 3 cut(s) | 775, 817, 1041 |
| SfaNI | GCATC | 3 cut(s) | 283, 997, 1131 |
| SfcI | CTRYAG | 1 cut(s) | 447 |
| SinI | GGWCC | 1 cut(s) | 1249 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 782, 879, 1044, 1203 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 6 cut(s) | 62, 219, 576, 820, 1027, 1258 |
| SsiI | CCGC | 4 cut(s) | 69, 86, 338, 1243 |
| SspI | AATATT | 2 cut(s) | 1023, 1288 |
| SspMI | CTAG | 3 cut(s) | 369, 591, 1133 |
| StyD4I | CCNGG | 2 cut(s) | 815, 1366 |
| TaaI | ACNGT | 2 cut(s) | 21, 853 |
| TaiI | ACGT | 2 cut(s) | 143, 898 |
| TaqI | TCGA | 2 cut(s) | 562, 1005 |
| TasI | AATT | 6 cut(s) | 62, 219, 576, 820, 1027, 1258 |
| TfiI | GAWTC | 2 cut(s) | 607, 1088 |
| Tru1I | TTAA | 1 cut(s) | 1026 |
| Tru9I | TTAA | 1 cut(s) | 1026 |
| TscAI | CASTG | 2 cut(s) | 163, 316 |
| TseFI | GTSAC | 1 cut(s) | 311 |
| TseI | GCWGC | 5 cut(s) | 596, 635, 650, 987, 1226 |
| Tsp45I | GTSAC | 1 cut(s) | 311 |
| TspDTI | ATGAA | 5 cut(s) | 359, 513, 710, 879, 1187 |
| TspRI | CASTG | 2 cut(s) | 163, 316 |
| VpaK11BI | GGWCC | 1 cut(s) | 1249 |
| XapI | RAATTY | 1 cut(s) | 820 |
| XceI | RCATGY | 2 cut(s) | 268, 697 |
| XmiI | GTMKAC | 1 cut(s) | 373 |
| XspI | CTAG | 3 cut(s) | 369, 591, 1133 |