RLG00000032337

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
13675533 .. 13677860
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032337

Sequence Viewer

Length: 1422 bp
ATGGAAGGAGGGACTACACGGTTAGCTAAGCTATTGCAGGGTTGTATAGACAAGAAGGCCCAATTGGGCGGGAAGGAGGAAAAGGCGGTGGGTGTTTATGAGGCGATGGTTTCGGAGGGGTTGGTGCCGACGCATTTTACGTTGGCGAGTGTGTTCAGTGCGTGTGGAGGGTTGTTGGATGTGGAGAAGGGGAGGAAATGTCATGGGATTGTGGTGAAAATTGGCCTTGAGGAGAATGTGTATGTGGGGAATGCTTTGCTGTGCATGTATGGTAAGTGTGGAGTTATGAGGGATGCAATGCAGGTTTTCAGTGACATGGCTGAGCCGAATGAGAGTGCGGACATGAAGAGTGCTGAGAAGGTTTTTGCTAGTATACCTGAAGTTAGTGTTGTTTCTTGGAATGTCATGATAACTGGGTATGGCCTGATATTTCAGAGTCAGAAAGCTATAGAATATCTACGAAGAATGCAATCTTGGGGCTTTGAACCTGATGAGAATGAAGACCACATGGAAGTAATCAAGCTTTTCAGGGAAATGCAGTTTCAGGGTGTGCAACCTGATCGAACTACTTTGGCAATTGCTCTCAGCTCTAGTGCAGCAATGGGGATTCTGGAGGCTGGAGAAGAGATCCATGCTGCCTCACACAAGGCTGCCTTTGATACAGATATATATGTTGCAAGCGCACTTATTGGCATGTATTCAAAGTGTGGGAAACAGGTTCATGCTCAGATAACAAAAGATGGATATGTGAGCGATGTTTTTGTTGGGAGTGCTCTCATTGGTATGTATTGCAAATGTGGTGATGTAGATGGGGCCCGGAATTTTTTTGATATGATGTCAAGCAAAAGTACGGTTACTTGGAATGAAATGATACATGGGTATGCACAGAATGGACGTGGAGATGAGGCTGTTCTTCTTTATTGGGACATGATTGCCTCAGCTGAGAGACCTGACGCCATTACTTTTGTTGCCGTTTTGACTGCTTGCAGCCATTCTGGATTGGTCGATGCAGGCATTGAAATATTTAATTCAATGGGGCACAAACATGGAGTGGAGCCGGTTCTGGATCATTACACTTGCATTATTGATTCTCTTGGCCGTGCTGGTCGTTTCCAAGAAGCAGAAGTCTTACTAGATGAGATGCCATATAAAGATGATCCAGTTATATGGGAGGTTTTGCTTAGTTCTTGTAGGGTTCATGCTAATGTGAGCTTAGCGAAAAGAGCAGCTGACGAACTCATCCGCTTGGACCCACATAATTCAGCTCCATATGTGCTTTTGGCCAATATTTATTCTTCTTTAGGAAGATGGGACGAGGCAAGAGCTGTGAGAGATCTAATGAGTAACAAACAAGTCATCAAGGATCCAGGTTATAGCCGGATTGAGTACGAGAAGGGAATGCAATCCAGTATGGTGGGATGA

Protein Analysis

474

Amino Acids

51.89

Weight (kDa)

5.16

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 283 - 330 1.1e-09 PPR repeat family
PPR PF01535 285 - 311 4.5e-06 PPR repeat
PPR_1 PF12854 350 - 381 1.3e-06 PPR repeat
E_motif PF20431 400 - 462 2e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014296)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 373
AciI CCGC 4 cut(s) 69, 86, 338, 1243
AclWI GGATC 5 cut(s) 622, 1074, 1151, 1358, 1371
AcoI YGGCCR 2 cut(s) 1096, 1281
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 954
AfaI GTAC 2 cut(s) 850, 1388
AgsI TTSAA 4 cut(s) 485, 702, 1019, 1032
AjiI CACGTC 1 cut(s) 896
AjnI CCWGG 1 cut(s) 1366
AjuI GAANNNNNNNTTGG 4 cut(s) 47, 79, 457, 489
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 940
AlwI GGATC 5 cut(s) 622, 1074, 1151, 1358, 1371
AoxI GGCC 6 cut(s) 57, 223, 421, 813, 1096, 1281
ApaI GGGCCC 1 cut(s) 817
ApeKI GCWGC 5 cut(s) 596, 635, 650, 987, 1226
ApoI RAATTY 1 cut(s) 820
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 4 cut(s) 58, 813, 814, 1249
AsuC2I CCSGG 1 cut(s) 817
AsuHPI GGTGA 2 cut(s) 226, 812
AvaII GGWCC 1 cut(s) 1249
BaeGI GKGCMC 2 cut(s) 817, 1041
BaeI ACNNNNGTAYC 2 cut(s) 863, 896
BalI TGGCCA 1 cut(s) 1283
BamHI GGATCC 1 cut(s) 1363
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 775
BbvCI CCTCAGC 1 cut(s) 937
BbvI GCAGC 5 cut(s) 608, 622, 637, 999, 1238
BccI CCATC 4 cut(s) 100, 734, 803, 1302
BceAI ACGGC 2 cut(s) 956, 1083
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 1368
BcnI CCSGG 1 cut(s) 817
BcoDI GTCTC 1 cut(s) 940
BfaI CTAG 3 cut(s) 369, 591, 1133
BfmI CTRYAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 292
BglII AGATCT 1 cut(s) 1333
BisI GCNGC 5 cut(s) 597, 636, 651, 988, 1227
BlpI GCTNAGC 3 cut(s) 27, 321, 1213
BlsI GCNGC 5 cut(s) 598, 637, 652, 989, 1228
Bme1390I CCNGG 2 cut(s) 817, 1368
Bme18I GGWCC 1 cut(s) 1249
BmgBI CACGTC 1 cut(s) 896
BmgT120I GGNCC 4 cut(s) 58, 813, 814, 1249
BmiI GGNNCC 6 cut(s) 126, 814, 815, 1056, 1251, 1365
BmrFI CCNGG 2 cut(s) 817, 1368
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 283, 997, 1131
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 507
BpmI CTGGAG 2 cut(s) 632, 639
Bpu10I CCTNAGC 1 cut(s) 937
Bpu1102I GCTNAGC 3 cut(s) 27, 321, 1213
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 817
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 940
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 224, 254
Bse118I RCCGGY 1 cut(s) 1057
Bse1I ACTGG 3 cut(s) 418, 1160, 1407
Bse3DI GCAATG 2 cut(s) 303, 606
BseBI CCWGG 1 cut(s) 1368
BseGI GGATG 3 cut(s) 184, 298, 1239
BseMI GCAATG 2 cut(s) 303, 606
BseMII CTCAG 6 cut(s) 312, 345, 598, 740, 933, 951
BseNI ACTGG 3 cut(s) 418, 1160, 1407
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 2 cut(s) 817, 1041
BseXI GCAGC 5 cut(s) 608, 622, 637, 999, 1238
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 6 cut(s) 59, 225, 423, 815, 1098, 1283
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 775
BsiSI CCGG 3 cut(s) 817, 1058, 1378
BslFI GGGAC 3 cut(s) 25, 938, 1325
BsmAI GTCTC 1 cut(s) 940
BsmFI GGGAC 3 cut(s) 25, 938, 1325
BsmI GAATGC 3 cut(s) 256, 471, 1404
BsnI GGCC 6 cut(s) 59, 225, 423, 815, 1098, 1283
Bso31I GGTCTC 1 cut(s) 940
Bsp120I GGGCCC 1 cut(s) 813
Bsp1286I GDGCHC 3 cut(s) 775, 817, 1041
Bsp143I GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
Bsp1720I GCTNAGC 3 cut(s) 27, 321, 1213
BspACI CCGC 4 cut(s) 69, 86, 338, 1243
BspANI GGCC 6 cut(s) 59, 225, 423, 815, 1098, 1283
BspCNI CTCAG 6 cut(s) 313, 346, 597, 739, 934, 950
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 6 cut(s) 126, 814, 815, 1056, 1251, 1365
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 5 cut(s) 622, 1074, 1151, 1358, 1371
BspT107I GGYRCC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 940
BsrDI GCAATG 2 cut(s) 303, 606
BsrFI RCCGGY 1 cut(s) 1057
BsrI ACTGG 3 cut(s) 418, 1160, 1407
BssAI RCCGGY 1 cut(s) 1057
BssMI GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
BssNAI GTATAC 1 cut(s) 374
BssNI GRCGYC 1 cut(s) 954
Bst1107I GTATAC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 1368
Bst4CI ACNGT 2 cut(s) 21, 853
Bst6I CTCTTC 2 cut(s) 341, 618
BstACI GRCGYC 1 cut(s) 954
BstC8I GCNNGC 3 cut(s) 679, 985, 1012
BstDEI CTNAG 9 cut(s) 27, 321, 354, 584, 726, 937, 942, 1181, 1213
BstF5I GGATG 3 cut(s) 184, 298, 1239
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 6 cut(s) 562, 630, 1069, 1159, 1336, 1366
BstMAI GTCTC 1 cut(s) 940
BstMBI GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
BstMWI GCNNNNNNNGC 1 cut(s) 1223
BstNI CCWGG 1 cut(s) 1368
BstNSI RCATGY 2 cut(s) 268, 697
BstSCI CCNGG 2 cut(s) 815, 1366
BstSFI CTRYAG 1 cut(s) 447
BstSLI GKGCMC 2 cut(s) 817, 1041
BstV1I GCAGC 5 cut(s) 608, 622, 637, 999, 1238
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 3 cut(s) 627, 1333, 1363
BstXI CCANNNNNNTGG 2 cut(s) 1167, 1414
BstYI RGATCY 3 cut(s) 627, 1333, 1363
BstZ17I GTATAC 1 cut(s) 374
BsuRI GGCC 6 cut(s) 59, 225, 423, 815, 1098, 1283
BtgZI GCGATG 2 cut(s) 119, 768
BtrI CACGTC 1 cut(s) 896
BtsCI GGATG 3 cut(s) 184, 298, 1239
BtsIMutI CAGTG 2 cut(s) 163, 316
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 679, 985, 1012
CciI TCATGA 1 cut(s) 405
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 4 cut(s) 58, 813, 814, 1249
CseI GACGC 2 cut(s) 139, 962
Csp6I GTAC 2 cut(s) 849, 1387
CviQI GTAC 2 cut(s) 849, 1387
DdeI CTNAG 9 cut(s) 27, 321, 354, 584, 726, 937, 942, 1181, 1213
DpnI GATC 6 cut(s) 561, 629, 1068, 1158, 1335, 1365
DpnII GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
EaeI YGGCCR 2 cut(s) 1096, 1281
Eam1104I CTCTTC 2 cut(s) 341, 618
EarI CTCTTC 2 cut(s) 341, 618
Eco24I GRGCYC 1 cut(s) 817
Eco31I GGTCTC 1 cut(s) 940
Eco47I GGWCC 1 cut(s) 1249
Eco57I CTGAAG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 813
EcoRII CCWGG 1 cut(s) 1366
EcoT38I GRGCYC 1 cut(s) 817
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 3 cut(s) 25, 938, 1325
FauI CCCGC 1 cut(s) 62
FauNDI CATATG 1 cut(s) 1270
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 5 cut(s) 597, 636, 651, 988, 1227
FokI GGATG 3 cut(s) 191, 305, 1226
FriOI GRGCYC 1 cut(s) 817
Fsp4HI GCNGC 5 cut(s) 597, 636, 651, 988, 1227
FspBI CTAG 3 cut(s) 369, 591, 1133
GlaI GCGC 1 cut(s) 682
GluI GCNGC 5 cut(s) 597, 636, 651, 988, 1227
GsuI CTGGAG 2 cut(s) 632, 639
HaeIII GGCC 6 cut(s) 59, 225, 423, 815, 1098, 1283
HapII CCGG 3 cut(s) 817, 1058, 1378
HgaI GACGC 2 cut(s) 139, 962
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 954
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 436, 607, 1088
HpaII CCGG 3 cut(s) 817, 1058, 1378
HphI GGTGA 2 cut(s) 226, 812
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 4 cut(s) 115, 435, 441, 729
Hpy188III TCNNGA 4 cut(s) 406, 611, 996, 1064
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 5 cut(s) 49, 67, 181, 352, 1387
HpyCH4III ACNGT 2 cut(s) 21, 853
HpyCH4IV ACGT 2 cut(s) 140, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 1223
HpyF3I CTNAG 9 cut(s) 27, 321, 354, 584, 726, 937, 942, 1181, 1213
HpySE526I ACGT 2 cut(s) 140, 895
Hsp92I GRCGYC 1 cut(s) 954
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
LmnI GCTCC 2 cut(s) 1054, 1270
Lsp1109I GCAGC 5 cut(s) 608, 622, 637, 999, 1238
LweI GCATC 3 cut(s) 283, 997, 1131
MaeI CTAG 3 cut(s) 369, 591, 1133
MaeII ACGT 2 cut(s) 140, 895
MaeIII GTNAC 3 cut(s) 311, 853, 1343
MalI GATC 6 cut(s) 561, 629, 1068, 1158, 1335, 1365
MboI GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
MboII GAAGA 7 cut(s) 358, 474, 512, 635, 905, 1287, 1317
MfeI CAATTG 2 cut(s) 62, 576
MflI RGATCY 3 cut(s) 627, 1333, 1363
MhlI GDGCHC 3 cut(s) 775, 817, 1041
MlsI TGGCCA 1 cut(s) 1283
MluCI AATT 6 cut(s) 62, 219, 576, 820, 1027, 1258
MluNI TGGCCA 1 cut(s) 1283
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 1283
MscI TGGCCA 1 cut(s) 1283
MseI TTAA 1 cut(s) 1026
MslI CAYNNNNRTG 4 cut(s) 782, 879, 1044, 1203
Msp20I TGGCCA 1 cut(s) 1283
MspA1I CMGCKG 2 cut(s) 941, 1229
MspI CCGG 3 cut(s) 817, 1058, 1378
MspR9I CCNGG 2 cut(s) 817, 1368
MunI CAATTG 2 cut(s) 62, 576
Mva1269I GAATGC 3 cut(s) 256, 471, 1404
MvaI CCWGG 1 cut(s) 1368
MwoI GCNNNNNNNGC 1 cut(s) 1223
NciI CCSGG 1 cut(s) 817
NdeI CATATG 1 cut(s) 1270
NdeII GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
NlaIV GGNNCC 6 cut(s) 126, 814, 815, 1056, 1251, 1365
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 2 cut(s) 268, 697
PagI TCATGA 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 3 cut(s) 256, 471, 1404
PfeI GAWTC 2 cut(s) 607, 1088
PkrI GCNGC 5 cut(s) 598, 637, 652, 989, 1228
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 1366
PspGI CCWGG 1 cut(s) 1366
PspN4I GGNNCC 6 cut(s) 126, 814, 815, 1056, 1251, 1365
PspOMI GGGCCC 1 cut(s) 813
PspPI GGNCC 4 cut(s) 58, 813, 814, 1249
PsuI RGATCY 3 cut(s) 627, 1333, 1363
PvuII CAGCTG 2 cut(s) 941, 1229
RsaI GTAC 2 cut(s) 850, 1388
RsaNI GTAC 2 cut(s) 849, 1387
RseI CAYNNNNRTG 4 cut(s) 782, 879, 1044, 1203
SaqAI TTAA 1 cut(s) 1026
SatI GCNGC 5 cut(s) 597, 636, 651, 988, 1227
Sau3AI GATC 6 cut(s) 559, 627, 1066, 1156, 1333, 1363
Sau96I GGNCC 4 cut(s) 58, 813, 814, 1249
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 817, 1368
SduI GDGCHC 3 cut(s) 775, 817, 1041
SfaNI GCATC 3 cut(s) 283, 997, 1131
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 1249
SmiMI CAYNNNNRTG 4 cut(s) 782, 879, 1044, 1203
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 6 cut(s) 62, 219, 576, 820, 1027, 1258
SsiI CCGC 4 cut(s) 69, 86, 338, 1243
SspI AATATT 2 cut(s) 1023, 1288
SspMI CTAG 3 cut(s) 369, 591, 1133
StyD4I CCNGG 2 cut(s) 815, 1366
TaaI ACNGT 2 cut(s) 21, 853
TaiI ACGT 2 cut(s) 143, 898
TaqI TCGA 2 cut(s) 562, 1005
TasI AATT 6 cut(s) 62, 219, 576, 820, 1027, 1258
TfiI GAWTC 2 cut(s) 607, 1088
Tru1I TTAA 1 cut(s) 1026
Tru9I TTAA 1 cut(s) 1026
TscAI CASTG 2 cut(s) 163, 316
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 5 cut(s) 596, 635, 650, 987, 1226
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 5 cut(s) 359, 513, 710, 879, 1187
TspRI CASTG 2 cut(s) 163, 316
VpaK11BI GGWCC 1 cut(s) 1249
XapI RAATTY 1 cut(s) 820
XceI RCATGY 2 cut(s) 268, 697
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 3 cut(s) 369, 591, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.