Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014296

Physical Location & Seq

Genomic Coordinates Reverse (-)

12767216 .. 12770318

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG143500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGCCTGAGAGGAATGTTGTGTCTTGGAACACTCTGATTAGTACTTTGGCCCGAAATGGTCAGGAGGAAGAGGCGGTGGGTGTTTACGAGGCGATGGTTTCCGAGGGGTTGGTGCCGACGCATTTTACGTTGGCGAGTGTCTTCAGTGCGTGTGGAGGGTTGTTGGATGTGGAGAAGGGGAGGAAATGTCATGGGGTTGTGGCGAAAATTGGCCTTGAGGAGAATGTGTATGTGGGGAATGCTTTGCTGTGCATGTATGCCAAGTGTGGAGTTATGAGGGATGCAATGCAGGTTTTCGGTGACATGGCTGAGCCGAATGAGGTTACTTTTACGGCTATGATGGGGGGGTTGAAGCAGACAGACAGAGTCGCGGAGGCTTTGGAAATGTTCAGGCTGATGTGTAGGAAAGGGGTGCGTGTTGATTCTGTTTCGTTGTCGAGTATGTTGGGTGTTTGTGCTAAAGGGTGTGGCGAGTCTGGTGTTTATGATTATAGTGATGGAATTCAGAGTAATGTGAATGGGCAACAAATACATGCCCTTACTGTTAAACTTGGATTTGAGGGAGATCTTCACTTGAACAATTCATTGCTTGATATGTATGCAAAGAGTGCGGACATGAAGAGTGCTGAGAAGGTTTTTGCTAGTATACCTGAAGTTAGTGTTGTTTCTTGGAATGTCATGATAACTGGGTATGGCCTGATATTTCAGAGTCAGAAAGCTATAGAATATCTACGAAGAATGCAATCTTGGGGCTTTGAACCTGATGAGGTCACATATATCAATTTGCTTGCAGCATGTGTCAAGTCTGGTGATATAAAAAGTGGCCGTCAAATGTTTGATAACATTTCATGCCCAAATGTGATTTCATGGAATGCAATACTCTCTGGCTATTTCCAGAATGAAGACCACACGGAAGTAATCAAGCTTTTCAGGGAAATGCAGTTTCGGGGTGTGCAACCTGATCGAACTACTTTGGCAATTGCTCTCAGCTCTAGTGCAGCAATGGGGATTCTGGAGGCTGGAGAAGAGATCCATGCTGCCTCACACAAGGCTGCCTTTGATACAGATATATATGTTGCAAGTGCACTTATTGGCATGTATTCAAAGTGTGGTAAGACAGAAATGGCAAAGCATATATTTCATAATATGCAAGAATTAGATGTTGTTTGTTGGAACTCTATGATAGCAGGTCTTTCACTAAATTCTCAAGATGAGGAAGCTTTCACTTACTTTAAGCAGATGAGGCAACATGAGATGCTTCCCTCCCAATTCTCTTATGCTACTATACTGAGTTGCTGTGCAAAGCTTGCTTCTTCATTTCAAGGGAAACAGGTTCATGCTCAGATAACAAAAGATGGATATGTGAGCGATGTTTTTGTTGGGAGTGCTCTCATTGGTATGTATTGCAAATGTGGTGATGTAGATGGGGCCCGGAATTTTTTTGATATGATGTCAAGCAAAAGTACGGTTACTTGGAATGAAATGATACATGGGTATGCACAGAATGGACGTGGAGATGAGGCTGTTCTTCTTTATTGGGACATGATTGCCTCAGCTGAGAGACCTGACGCCATTACTTTTGTTGCTGTTTTGACTGCTTGCAGCCATTCTGGATTGGTCGATGCAGGCATTGAAATATTTAATTCAATGGGGCACAAACATGGAGTGGAGCCAGTTCTGGATCATTACACTTGCATTATTGATTCTCTTGGCCGTGCTGGTCGTTTCCAAGAAGCAGAAGTCTTACTAGATGATATGCCATATAAAGATGATCCCGTTATATGGGAGGTTTTGCTTAGTTCTTGTAGGGTTCATGCTAATGTGAGCTTAGCGAAAAGAGCAGCTGACGAACTCATCCGCTTGGACCCATATAATTCAGCTCCATATGTGCTTTTGGCCAATATTTATTCTTCTTTAGGAAGATGGGACGAGGCAAGAGCTGTGAGAGATCTAATGAGTAACAAACAAGTCATCAAGGATCCAGGTTATAGCCGGATTGAGTACGAGAAGGGAATGCAATCCGGTATGGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

678

Amino Acids

74.7

Weight (kDa)

5.19

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 51	1e-09	PPR repeat family
PPR	PF01535	7 - 37	1.7e-06	PPR repeat
PPR_2	PF13041	105 - 154	4.9e-09	PPR repeat family
PPR_2	PF13041	220 - 268	1.6e-09	PPR repeat family
PPR_2	PF13041	285 - 329	2.5e-11	PPR repeat family
PPR	PF01535	288 - 318	5.9e-06	PPR repeat
PPR_2	PF13041	387 - 435	2.5e-08	PPR repeat family
PPR_2	PF13041	488 - 535	1.8e-09	PPR repeat family
PPR	PF01535	490 - 516	7e-06	PPR repeat
PPR_1	PF12854	555 - 586	1e-05	PPR repeat
E_motif	PF20431	605 - 667	7.6e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20770
fragaria_vesca	FvH4_3g11160
malus_domestica	MD10G1243200.v1.1
prunus_persica	Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1
pyrus_communis	pycom10g20340
rosa_chinensis	RchiOBHm_Chr5g0018061
rosa_laevigata	RLG00000032337
rosa_multiflora	Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059550
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5BG131500 Rh5CG143500 Rh5DG133200
rosa_wichuraiana	Rw5G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	280, 1178
AccB1I	GGYRCC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	646
AccII	CGCG	1 cut(s)	371
AciI	CCGC	4 cut(s)	74, 371, 611, 1858
AclWI	GGATC	5 cut(s)	1024, 1689, 1766, 1973, 1986
AcoI	YGGCCR	3 cut(s)	823, 1711, 1896
AcsI	RAATTY	3 cut(s)	501, 1201, 1435
AcuI	CTGAAG	2 cut(s)	127, 672
AcyI	GRCGYC	1 cut(s)	1569
AfaI	GTAC	3 cut(s)	43, 1465, 2003
AfiI	CCNNNNNNNGG	1 cut(s)	1782
AgsI	TTSAA	7 cut(s)	352, 577, 758, 1104, 1322, 1634, 1647
AjiI	CACGTC	1 cut(s)	1511
AjnI	CCWGG	1 cut(s)	1981
AjuI	GAANNNNNNNTTGG	4 cut(s)	730, 762, 847, 879
Alw21I	GWGCWC	2 cut(s)	1087, 1390
Alw26I	GTCTC	1 cut(s)	1555
Alw44I	GTGCAC	1 cut(s)	1083
AlwI	GGATC	5 cut(s)	1024, 1689, 1766, 1973, 1986
AoxI	GGCC	7 cut(s)	48, 211, 694, 823, 1428, 1711, 1896
ApaI	GGGCCC	1 cut(s)	1432
ApaLI	GTGCAC	1 cut(s)	1083
ApeKI	GCWGC	6 cut(s)	791, 998, 1037, 1052, 1602, 1841
ApoI	RAATTY	3 cut(s)	501, 1201, 1435
AspS9I	GGNCC	4 cut(s)	49, 1428, 1429, 1864
AsuC2I	CCSGG	1 cut(s)	1432
AsuHPI	GGTGA	3 cut(s)	311, 821, 1427
AvaII	GGWCC	1 cut(s)	1864
BaeGI	GKGCMC	3 cut(s)	1087, 1432, 1656
BaeI	ACNNNNGTAYC	2 cut(s)	1478, 1511
BalI	TGGCCA	1 cut(s)	1898
BamHI	GGATCC	1 cut(s)	1978
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	1432
BbsI	GAAGAC	2 cut(s)	133, 909
Bbv12I	GWGCWC	2 cut(s)	1087, 1390
BbvCI	CCTCAGC	1 cut(s)	1552
BbvI	GCAGC	6 cut(s)	803, 1010, 1024, 1039, 1614, 1853
BccI	CCATC	6 cut(s)	88, 334, 491, 1349, 1418, 1917
BceAI	ACGGC	3 cut(s)	348, 810, 1698
BcgI	CGANNNNNNTGC	2 cut(s)	944, 978
BciT130I	CCWGG	1 cut(s)	1983
BcnI	CCSGG	1 cut(s)	1432
BcoDI	GTCTC	1 cut(s)	1555
BfaI	CTAG	3 cut(s)	642, 993, 1748
BfmI	CTRYAG	1 cut(s)	720
BfuAI	ACCTGC	2 cut(s)	280, 1178
BglII	AGATCT	2 cut(s)	565, 1948
BisI	GCNGC	6 cut(s)	792, 999, 1038, 1053, 1603, 1842
BlpI	GCTNAGC	2 cut(s)	309, 1828
BlsI	GCNGC	6 cut(s)	793, 1000, 1039, 1054, 1604, 1843
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	1432, 1983
Bme18I	GGWCC	1 cut(s)	1864
BmgBI	CACGTC	1 cut(s)	1511
BmgT120I	GGNCC	4 cut(s)	49, 1428, 1429, 1864
BmiI	GGNNCC	6 cut(s)	114, 1429, 1430, 1671, 1866, 1980
BmrFI	CCNGG	2 cut(s)	1432, 1983
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	3 cut(s)	271, 1245, 1612
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	133, 909
BpmI	CTGGAG	2 cut(s)	1034, 1041
Bpu10I	CCTNAGC	1 cut(s)	1552
Bpu1102I	GCTNAGC	2 cut(s)	309, 1828
BpuEI	CTTGAG	2 cut(s)	236, 1191
BpuMI	CCSGG	1 cut(s)	1432
BsaHI	GRCGYC	1 cut(s)	1569
BsaI	GGTCTC	1 cut(s)	1555
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	2021
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	1782
Bse1I	ACTGG	2 cut(s)	691, 1673
Bse3DI	GCAATG	3 cut(s)	291, 584, 1008
BseBI	CCWGG	1 cut(s)	1983
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	3 cut(s)	172, 286, 1854
BseLI	CCNNNNNNNGG	1 cut(s)	1782
BseMI	GCAATG	3 cut(s)	291, 584, 1008
BseMII	CTCAG	7 cut(s)	300, 618, 1000, 1280, 1355, 1548, 1566
BseNI	ACTGG	2 cut(s)	691, 1673
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	3 cut(s)	1087, 1432, 1656
BseXI	GCAGC	6 cut(s)	803, 1010, 1024, 1039, 1614, 1853
BsgI	GTGCAG	1 cut(s)	1017
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	7 cut(s)	50, 213, 696, 825, 1430, 1713, 1898
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	1087, 1390
BsiSI	CCGG	3 cut(s)	1432, 1993, 2022
BslFI	GGGAC	2 cut(s)	1553, 1940
BslI	CCNNNNNNNGG	1 cut(s)	1782
BsmAI	GTCTC	1 cut(s)	1555
BsmFI	GGGAC	2 cut(s)	1553, 1940
BsmI	GAATGC	4 cut(s)	244, 744, 877, 2019
BsnI	GGCC	7 cut(s)	50, 213, 696, 825, 1430, 1713, 1898
Bso31I	GGTCTC	1 cut(s)	1555
Bsp120I	GGGCCC	1 cut(s)	1428
Bsp1286I	GDGCHC	4 cut(s)	1087, 1390, 1432, 1656
Bsp143I	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
Bsp1720I	GCTNAGC	2 cut(s)	309, 1828
BspACI	CCGC	4 cut(s)	74, 371, 611, 1858
BspANI	GGCC	7 cut(s)	50, 213, 696, 825, 1430, 1713, 1898
BspCNI	CTCAG	7 cut(s)	301, 619, 999, 1281, 1354, 1549, 1565
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	678
BspLI	GGNNCC	6 cut(s)	114, 1429, 1430, 1671, 1866, 1980
BspMI	ACCTGC	2 cut(s)	280, 1178
BspPI	GGATC	5 cut(s)	1024, 1689, 1766, 1973, 1986
BspT107I	GGYRCC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	1555
BsrDI	GCAATG	3 cut(s)	291, 584, 1008
BsrI	ACTGG	2 cut(s)	691, 1673
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
BssNAI	GTATAC	1 cut(s)	647
BssNI	GRCGYC	1 cut(s)	1569
Bst1107I	GTATAC	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	1983
Bst4CI	ACNGT	2 cut(s)	544, 1468
Bst6I	CTCTTC	3 cut(s)	63, 614, 1020
BstACI	GRCGYC	1 cut(s)	1569
BstAPI	GCANNNNNTGC	2 cut(s)	608, 1307
BstC8I	GCNNGC	4 cut(s)	789, 1308, 1600, 1627
BstF5I	GGATG	3 cut(s)	172, 286, 1854
BstFNI	CGCG	1 cut(s)	371
BstKTI	GATC	7 cut(s)	568, 964, 1032, 1684, 1774, 1951, 1981
BstMAI	GTCTC	1 cut(s)	1555
BstMBI	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
BstMWI	GCNNNNNNNGC	4 cut(s)	608, 1243, 1307, 1838
BstNI	CCWGG	1 cut(s)	1983
BstNSI	RCATGY	4 cut(s)	256, 536, 798, 1099
BstSCI	CCNGG	2 cut(s)	1430, 1981
BstSFI	CTRYAG	1 cut(s)	720
BstSLI	GKGCMC	3 cut(s)	1087, 1432, 1656
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	6 cut(s)	803, 1010, 1024, 1039, 1614, 1853
BstV2I	GAAGAC	2 cut(s)	133, 909
BstX2I	RGATCY	4 cut(s)	565, 1029, 1948, 1978
BstYI	RGATCY	4 cut(s)	565, 1029, 1948, 1978
BstZ17I	GTATAC	1 cut(s)	647
BsuRI	GGCC	7 cut(s)	50, 213, 696, 825, 1430, 1713, 1898
BtgZI	GCGATG	2 cut(s)	107, 1383
BtrI	CACGTC	1 cut(s)	1511
BtsCI	GGATG	3 cut(s)	172, 286, 1854
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	2 cut(s)	280, 1178
Cac8I	GCNNGC	4 cut(s)	789, 1308, 1600, 1627
CciI	TCATGA	1 cut(s)	678
Cfr13I	GGNCC	4 cut(s)	49, 1428, 1429, 1864
CseI	GACGC	2 cut(s)	127, 1577
Csp6I	GTAC	3 cut(s)	42, 1464, 2002
CviQI	GTAC	3 cut(s)	42, 1464, 2002
DpnI	GATC	7 cut(s)	567, 963, 1031, 1683, 1773, 1950, 1980
DpnII	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
EaeI	YGGCCR	3 cut(s)	823, 1711, 1896
Eam1104I	CTCTTC	3 cut(s)	63, 614, 1020
EarI	CTCTTC	3 cut(s)	63, 614, 1020
Eco24I	GRGCYC	1 cut(s)	1432
Eco31I	GGTCTC	1 cut(s)	1555
Eco47I	GGWCC	1 cut(s)	1864
Eco57I	CTGAAG	2 cut(s)	127, 672
EcoO109I	RGGNCCY	1 cut(s)	1428
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	1981
EcoT38I	GRGCYC	1 cut(s)	1432
FalI	AAGNNNNNCTT	2 cut(s)	1040, 1072
FaqI	GGGAC	2 cut(s)	1553, 1940
FauNDI	CATATG	1 cut(s)	1885
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	6 cut(s)	792, 999, 1038, 1053, 1603, 1842
FokI	GGATG	3 cut(s)	179, 293, 1841
FriOI	GRGCYC	1 cut(s)	1432
Fsp4HI	GCNGC	6 cut(s)	792, 999, 1038, 1053, 1603, 1842
FspBI	CTAG	3 cut(s)	642, 993, 1748
GluI	GCNGC	6 cut(s)	792, 999, 1038, 1053, 1603, 1842
GsuI	CTGGAG	2 cut(s)	1034, 1041
HaeIII	GGCC	7 cut(s)	50, 213, 696, 825, 1430, 1713, 1898
HapII	CCGG	3 cut(s)	1432, 1993, 2022
HgaI	GACGC	2 cut(s)	127, 1577
Hin1I	GRCGYC	1 cut(s)	1569
HindIII	AAGCTT	3 cut(s)	923, 1218, 1304
HinfI	GANTC	6 cut(s)	366, 422, 473, 709, 1009, 1703
HpaII	CCGG	3 cut(s)	1432, 1993, 2022
HphI	GGTGA	3 cut(s)	311, 821, 1427
Hpy166II	GTNNAC	3 cut(s)	85, 647, 1085
Hpy188I	TCNGA	6 cut(s)	36, 103, 507, 708, 714, 1344
Hpy188III	TCNNGA	7 cut(s)	62, 679, 895, 1013, 1208, 1611, 1679
Hpy8I	GTNNAC	3 cut(s)	85, 647, 1085
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	169, 625, 2002
HpyCH4III	ACNGT	2 cut(s)	544, 1468
HpyCH4IV	ACGT	2 cut(s)	128, 1510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	608, 1243, 1307, 1838
HpySE526I	ACGT	2 cut(s)	128, 1510
Hsp92I	GRCGYC	1 cut(s)	1569
Kzo9I	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
LmnI	GCTCC	2 cut(s)	1669, 1885
Lsp1109I	GCAGC	6 cut(s)	803, 1010, 1024, 1039, 1614, 1853
LweI	GCATC	3 cut(s)	271, 1245, 1612
MaeI	CTAG	3 cut(s)	642, 993, 1748
MaeII	ACGT	2 cut(s)	128, 1510
MaeIII	GTNAC	5 cut(s)	299, 322, 769, 1468, 1958
MalI	GATC	7 cut(s)	567, 963, 1031, 1683, 1773, 1950, 1980
MboI	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
MfeI	CAATTG	1 cut(s)	978
MflI	RGATCY	4 cut(s)	565, 1029, 1948, 1978
MhlI	GDGCHC	4 cut(s)	1087, 1390, 1432, 1656
MlsI	TGGCCA	1 cut(s)	1898
MluNI	TGGCCA	1 cut(s)	1898
MlyI	GAGTC	3 cut(s)	375, 482, 718
MmeI	TCCRAC	2 cut(s)	144, 1151
Mox20I	TGGCCA	1 cut(s)	1898
MscI	TGGCCA	1 cut(s)	1898
MseI	TTAA	3 cut(s)	546, 1233, 1641
MslI	CAYNNNNRTG	4 cut(s)	1397, 1494, 1659, 1818
Msp20I	TGGCCA	1 cut(s)	1898
MspA1I	CMGCKG	2 cut(s)	1556, 1844
MspI	CCGG	3 cut(s)	1432, 1993, 2022
MspR9I	CCNGG	2 cut(s)	1432, 1983
MunI	CAATTG	1 cut(s)	978
Mva1269I	GAATGC	4 cut(s)	244, 744, 877, 2019
MvaI	CCWGG	1 cut(s)	1983
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	4 cut(s)	608, 1243, 1307, 1838
NciI	CCSGG	1 cut(s)	1432
NdeI	CATATG	1 cut(s)	1885
NdeII	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
NlaIV	GGNNCC	6 cut(s)	114, 1429, 1430, 1671, 1866, 1980
NmuCI	GTSAC	2 cut(s)	299, 769
NspI	RCATGY	4 cut(s)	256, 536, 798, 1099
PagI	TCATGA	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	4 cut(s)	244, 744, 877, 2019
PfeI	GAWTC	3 cut(s)	422, 1009, 1703
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	6 cut(s)	793, 1000, 1039, 1054, 1604, 1843
PleI	GAGTC	3 cut(s)	374, 481, 717
PpsI	GAGTC	3 cut(s)	374, 481, 717
Psp6I	CCWGG	1 cut(s)	1981
PspGI	CCWGG	1 cut(s)	1981
PspN4I	GGNNCC	6 cut(s)	114, 1429, 1430, 1671, 1866, 1980
PspOMI	GGGCCC	1 cut(s)	1428
PspPI	GGNCC	4 cut(s)	49, 1428, 1429, 1864
PsuI	RGATCY	4 cut(s)	565, 1029, 1948, 1978
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	2 cut(s)	1556, 1844
RsaI	GTAC	3 cut(s)	43, 1465, 2003
RsaNI	GTAC	3 cut(s)	42, 1464, 2002
RseI	CAYNNNNRTG	4 cut(s)	1397, 1494, 1659, 1818
SaqAI	TTAA	3 cut(s)	546, 1233, 1641
SatI	GCNGC	6 cut(s)	792, 999, 1038, 1053, 1603, 1842
Sau3AI	GATC	7 cut(s)	565, 961, 1029, 1681, 1771, 1948, 1978
Sau96I	GGNCC	4 cut(s)	49, 1428, 1429, 1864
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	3 cut(s)	375, 482, 718
ScrFI	CCNGG	2 cut(s)	1432, 1983
SduI	GDGCHC	4 cut(s)	1087, 1390, 1432, 1656
SfaNI	GCATC	3 cut(s)	271, 1245, 1612
SfcI	CTRYAG	1 cut(s)	720
SinI	GGWCC	1 cut(s)	1864
SmiMI	CAYNNNNRTG	4 cut(s)	1397, 1494, 1659, 1818
SmlI	CTYRAG	2 cut(s)	215, 1206
SmoI	CTYRAG	2 cut(s)	215, 1206
SsiI	CCGC	4 cut(s)	74, 371, 611, 1858
SspI	AATATT	2 cut(s)	1638, 1903
SspMI	CTAG	3 cut(s)	642, 993, 1748
StyD4I	CCNGG	2 cut(s)	1430, 1981
TaaI	ACNGT	2 cut(s)	544, 1468
TaiI	ACGT	2 cut(s)	131, 1513
TaqI	TCGA	3 cut(s)	437, 964, 1620
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	422, 1009, 1703
Tru1I	TTAA	3 cut(s)	546, 1233, 1641
Tru9I	TTAA	3 cut(s)	546, 1233, 1641
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	299, 769
TseI	GCWGC	6 cut(s)	791, 998, 1037, 1052, 1602, 1841
Tsp45I	GTSAC	2 cut(s)	299, 769
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	365
VneI	GTGCAC	1 cut(s)	1083
VpaK11BI	GGWCC	1 cut(s)	1864
XapI	RAATTY	3 cut(s)	501, 1201, 1435
XceI	RCATGY	4 cut(s)	256, 536, 798, 1099
XmiI	GTMKAC	1 cut(s)	646
XspI	CTAG	3 cut(s)	642, 993, 1748
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.