Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014296

Physical Location & Seq

Genomic Coordinates Reverse (-)

13169842 .. 13174087

Gene Structure 4246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGAAGGAGGGACTACACGGTTAGCTAAGCTATTGCAAGGTTGTATAGACAAGAAGGCCCAATTGGGCGGGAAGGTTATTCATGGGTTTATATTACGTAATAAAGGCTTGTACTTTGATACGTTTCTATCTAATAGACTCATTGAGTTGTACTCAAAGTGTGGTCATTTGGGTTATGCCCACCATGTGTTTGATAAAATGCCTAAGCCGGATGTGTACTCGTGGAATGCGGTGTTGGGTTGTTATTGTAAAGCTGGGAGGTTGGGCGATGCGGAGGAGTTGTTTCTGAAAATGCCTGAGAGGAATGTTGTGTCTTGGAACACTCTGATTACTACTTTGGCCCGAAATGGTCAGGAGGAAAAGGCAGTGGGTGTTTATGAGGCGATGGTTTCGGAGGGGTTGGTGCCGACGCATTTTACGTTGGCGAGTGTGTTCAGTGCGTGTGGAGGGTTGTTGGATGTGGAGAAGGGGAGGAAATGTCATGGGGTTGTGGCGAAAATTGGCCTTGAGGAGAATGTGTATGTGGGGAATGCTTTGCTGTGCATGTATGCTAAGTGTGGAGTTATGAGGGATGCAATGCAGGTTTTCGGTGACATGGCTGAGCCGAATGAGGTTACTTTTACAGCTATGATGGGGGGGTTGAAGCAGACAGACAGAGTCGCGGAGGCTTTGGAAATGTTCAGGCTGATGTGTAGGAAAGGGGTGCATGTTGATTCTGTTTCGTTGTCGAGTATGTTGGGTGTTTGTGCTAAAGGGTGTGGCGAGTCTGGTGTTTATGATTATAGTGATGGAATTCAGAGTAATGTGAATGGGCAACAAATACATGCCCTTACTGTTAAACTTGGATTTGAGGGAGATCTTCACTTGAACAATTCATTGCTTGATATGTATGCAAAGAGTGCGGACATGAAGAGTGCTGAGAAGGTTTTTGCTAGTATACCTGAAGTTAGTGTTGTTTCTTGGAATGTCATGATAACTGGGTATGGCCTGATATTTCAGAGTCAGAAAGCTATAGAATATCTACGAAGAATGCAATCTTGGGGCTTTGAACCTGATGAGGTCACATATATCAATTTGCTTGCAGCATGTGTCAAGTCTGGTGATATAAAAAGTGGCCGTCAAATGTTTGATAACATTTCATGCCCAAATGTGATTTCATGGAATGCAATACTCTCTGGCTATTTCCAGAATGAAGACCACATGGAAGTAATCAAGCTTTTCAGGGAAATGCAGTTTCGGGGTGTGCAACCTGATCGAACTACTTTGGCAATTGCTCTCAGCTCTAGTGCAGCAATGGGGATTCTGGAGGCTGGAGAAGAGATCCATGCTGCCTCACACAAGGCTGCCTTTGATACAGATATATATGTTGCAAGCGCACTTATTGGCATGTATTCAAAGTGTGGTAAGACAGGAATGGCAAAGCATATATTTCATAATATGCAAGAATTAGATGTTGTTTGTTGGAACTCTATGATAGCAGGTCTTTCACTAAATTCTCAAGATGAGGAAGCTTTCACTTACTTTAAGCAGATGAGGCAACATGAGATGCTTCCCACCCAATTCTCTTATGCTACTATACTGAGTTGCTGTGCAAAGCTTGCTTCTTCATTTCAAGGGAAACAGGTTCATGCTCAGATAACAAAAGATGGATATGTGAGCGATGTTTTTGTTGGGAGTGCTCTCATTGGTATGTATTGCAAATGTGGTGATGTAGATGGGGCCCGGAATTTTTTTGATATGATGTCAAGCAAAAGTACGGTTACTTGGAATGAAATGATACATGGGTATGCACAGAATGGACGTGGAGGTGAGGCTGTTCTTCTTTATTGGGACATGATTGCCTCAGCTGAGAGACCTGACGCCATTACTTTTGTTGCTGTTTTGACTGCTTGCAGCCATTCTGGATTGGTCGATGCAGGCATTGAAATATTTAATTCAATGGGGCACAAACATGGAGTGGAGCCAGCTCTGGATCATTACACTTGCATTATTGATTCTCTTGGCCGTGCTGGTCGTTTCCAAGAAGCAGAAGTCTTACTAGATGAGATGCCATATAATGATGATCCAGTTATATGGGAGGTTTTGCTTAGTTCTTGTAGGGTTCATGCTAATGTGAGCTTAGCGAAAAGAGCAGCTGACGAACTCATCCGCTTGGACCCACATAATTCAGCTCCGTATGTGCTTTTGGCCAATATTTATTCTTCTTTAGGAAGATGGGACGAGGCAAGAGCTGTGAGAGACCTAATGAGTAACAAACAAGTCATCAAGGATCCAGGTTATAGCCGGATTGAGTACGAGAAGGGAATGCAATCCAGTATGGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

775

Amino Acids

85.45

Weight (kDa)

5.77

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	68 - 98	8.6e-08	PPR repeat
PPR_2	PF13041	70 - 103	3.8e-07	PPR repeat family
PPR	PF01535	73 - 103	1.6e-07	PPR repeat
PPR_2	PF13041	101 - 148	1.7e-09	PPR repeat family
PPR_2	PF13041	202 - 251	6.9e-09	PPR repeat family
PPR_2	PF13041	317 - 365	1.9e-09	PPR repeat family
PPR_2	PF13041	382 - 426	4.9e-11	PPR repeat family
PPR	PF01535	385 - 415	8.4e-06	PPR repeat
PPR_2	PF13041	484 - 532	2.8e-08	PPR repeat family
PPR_2	PF13041	585 - 632	1.3e-08	PPR repeat family
PPR_1	PF12854	652 - 683	3.9e-06	PPR repeat
E_motif	PF20431	702 - 764	4e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20770
fragaria_vesca	FvH4_3g11160
malus_domestica	MD10G1243200.v1.1
prunus_persica	Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1
pyrus_communis	pycom10g20340
rosa_chinensis	RchiOBHm_Chr5g0018061
rosa_laevigata	RLG00000032337
rosa_multiflora	Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059550
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5BG131500 Rh5CG143500 Rh5DG133200
rosa_wichuraiana	Rw5G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	571, 1469
AccB1I	GGYRCC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	937
AccII	CGCG	1 cut(s)	662
AciI	CCGC	6 cut(s)	69, 230, 272, 662, 902, 2149
AclWI	GGATC	5 cut(s)	1315, 1980, 2057, 2264, 2277
AcoI	YGGCCR	3 cut(s)	1114, 2002, 2187
AcsI	RAATTY	3 cut(s)	792, 1492, 1726
AcuI	CTGAAG	1 cut(s)	963
AcyI	GRCGYC	1 cut(s)	1860
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	5 cut(s)	113, 152, 218, 1756, 2294
AgsI	TTSAA	7 cut(s)	643, 868, 1049, 1395, 1613, 1925, 1938
AjiI	CACGTC	1 cut(s)	1802
AjnI	CCWGG	1 cut(s)	2272
AjuI	GAANNNNNNNTTGG	8 cut(s)	47, 79, 218, 250, 1021, 1053, 1138, 1170
Alw21I	GWGCWC	1 cut(s)	1681
Alw26I	GTCTC	2 cut(s)	1846, 2232
AlwI	GGATC	5 cut(s)	1315, 1980, 2057, 2264, 2277
AoxI	GGCC	8 cut(s)	57, 339, 502, 985, 1114, 1719, 2002, 2187
ApaI	GGGCCC	1 cut(s)	1723
ApeKI	GCWGC	6 cut(s)	1082, 1289, 1328, 1343, 1893, 2132
ApoI	RAATTY	3 cut(s)	792, 1492, 1726
AspLEI	GCGC	1 cut(s)	1376
AspS9I	GGNCC	5 cut(s)	58, 340, 1719, 1720, 2155
AsuC2I	CCSGG	1 cut(s)	1723
AsuHPI	GGTGA	4 cut(s)	602, 1112, 1718, 1820
AvaII	GGWCC	1 cut(s)	2155
BaeGI	GKGCMC	2 cut(s)	1723, 1947
BaeI	ACNNNNGTAYC	2 cut(s)	1769, 1802
BalI	TGGCCA	1 cut(s)	2189
BamHI	GGATCC	1 cut(s)	2269
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	1723
BauI	CACGAG	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	1200
Bbv12I	GWGCWC	1 cut(s)	1681
BbvCI	CCTCAGC	1 cut(s)	1843
BbvI	GCAGC	6 cut(s)	1094, 1301, 1315, 1330, 1905, 2144
BccI	CCATC	6 cut(s)	379, 625, 782, 1640, 1709, 2208
BceAI	ACGGC	2 cut(s)	1101, 1989
BcgI	CGANNNNNNTGC	2 cut(s)	1235, 1269
BciT130I	CCWGG	1 cut(s)	2274
BcnI	CCSGG	1 cut(s)	1723
BcoDI	GTCTC	2 cut(s)	1846, 2232
BfaI	CTAG	3 cut(s)	933, 1284, 2039
BfmI	CTRYAG	1 cut(s)	1011
BfuAI	ACCTGC	2 cut(s)	571, 1469
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	6 cut(s)	1083, 1290, 1329, 1344, 1894, 2133
BlpI	GCTNAGC	3 cut(s)	27, 600, 2119
BlsI	GCNGC	6 cut(s)	1084, 1291, 1330, 1345, 1895, 2134
Bme1390I	CCNGG	2 cut(s)	1723, 2274
Bme18I	GGWCC	1 cut(s)	2155
BmgBI	CACGTC	1 cut(s)	1802
BmgT120I	GGNCC	5 cut(s)	58, 340, 1719, 1720, 2155
BmiI	GGNNCC	6 cut(s)	405, 1720, 1721, 1962, 2157, 2271
BmrFI	CCNGG	2 cut(s)	1723, 2274
BmrI	ACTGGG	1 cut(s)	987
BmsI	GCATC	5 cut(s)	259, 562, 1536, 1903, 2037
BmuI	ACTGGG	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	1200
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	2 cut(s)	1325, 1332
Bpu10I	CCTNAGC	2 cut(s)	204, 1843
Bpu1102I	GCTNAGC	3 cut(s)	27, 600, 2119
BpuEI	CTTGAG	2 cut(s)	527, 1482
BpuMI	CCSGG	1 cut(s)	1723
BsaAI	YACGTR	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	1860
BsaI	GGTCTC	2 cut(s)	1846, 2232
BsaXI	ACNNNNNCTCC	6 cut(s)	266, 296, 463, 493, 503, 533
Bse1I	ACTGG	3 cut(s)	982, 2066, 2313
Bse3DI	GCAATG	3 cut(s)	582, 875, 1299
BseBI	CCWGG	1 cut(s)	2274
BseGI	GGATG	4 cut(s)	217, 463, 577, 2145
BseMI	GCAATG	3 cut(s)	582, 875, 1299
BseMII	CTCAG	8 cut(s)	288, 591, 909, 1291, 1571, 1646, 1839, 1857
BseNI	ACTGG	3 cut(s)	982, 2066, 2313
BseRI	GAGGAG	2 cut(s)	290, 524
BseSI	GKGCMC	2 cut(s)	1723, 1947
BseXI	GCAGC	6 cut(s)	1094, 1301, 1315, 1330, 1905, 2144
BseYI	CCCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	1308
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	8 cut(s)	59, 341, 504, 987, 1116, 1721, 2004, 2189
BshNI	GGYRCC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	1681
BsiSI	CCGG	3 cut(s)	209, 1723, 2284
BslFI	GGGAC	3 cut(s)	25, 1844, 2231
BsmAI	GTCTC	2 cut(s)	1846, 2232
BsmFI	GGGAC	3 cut(s)	25, 1844, 2231
BsmI	GAATGC	5 cut(s)	232, 535, 1035, 1168, 2310
BsnI	GGCC	8 cut(s)	59, 341, 504, 987, 1116, 1721, 2004, 2189
Bso31I	GGTCTC	2 cut(s)	1846, 2232
Bsp120I	GGGCCC	1 cut(s)	1719
Bsp1286I	GDGCHC	3 cut(s)	1681, 1723, 1947
Bsp143I	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
Bsp1720I	GCTNAGC	3 cut(s)	27, 600, 2119
BspACI	CCGC	6 cut(s)	69, 230, 272, 662, 902, 2149
BspANI	GGCC	8 cut(s)	59, 341, 504, 987, 1116, 1721, 2004, 2189
BspCNI	CTCAG	8 cut(s)	289, 592, 910, 1290, 1572, 1645, 1840, 1856
BspFNI	CGCG	1 cut(s)	662
BspHI	TCATGA	1 cut(s)	969
BspLI	GGNNCC	6 cut(s)	405, 1720, 1721, 1962, 2157, 2271
BspMI	ACCTGC	2 cut(s)	571, 1469
BspPI	GGATC	5 cut(s)	1315, 1980, 2057, 2264, 2277
BspT107I	GGYRCC	1 cut(s)	403
BspTNI	GGTCTC	2 cut(s)	1846, 2232
BsrDI	GCAATG	3 cut(s)	582, 875, 1299
BsrI	ACTGG	3 cut(s)	982, 2066, 2313
BssMI	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
BssNAI	GTATAC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	1860
BssSI	CACGAG	1 cut(s)	220
Bst1107I	GTATAC	1 cut(s)	938
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	2274
Bst4CI	ACNGT	3 cut(s)	21, 835, 1759
Bst6I	CTCTTC	2 cut(s)	905, 1311
BstACI	GRCGYC	1 cut(s)	1860
BstAPI	GCANNNNNTGC	2 cut(s)	899, 1598
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	6 cut(s)	1080, 1372, 1599, 1891, 1918, 1965
BstF5I	GGATG	4 cut(s)	217, 463, 577, 2145
BstFNI	CGCG	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	1376
BstKTI	GATC	6 cut(s)	859, 1255, 1323, 1975, 2065, 2272
BstMAI	GTCTC	2 cut(s)	1846, 2232
BstMBI	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
BstMWI	GCNNNNNNNGC	4 cut(s)	899, 1534, 1598, 2129
BstNI	CCWGG	1 cut(s)	2274
BstNSI	RCATGY	5 cut(s)	547, 710, 827, 1089, 1390
BstSCI	CCNGG	2 cut(s)	1721, 2272
BstSFI	CTRYAG	1 cut(s)	1011
BstSLI	GKGCMC	2 cut(s)	1723, 1947
BstSNI	TACGTA	1 cut(s)	98
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	6 cut(s)	1094, 1301, 1315, 1330, 1905, 2144
BstV2I	GAAGAC	1 cut(s)	1200
BstX2I	RGATCY	3 cut(s)	856, 1320, 2269
BstXI	CCANNNNNNTGG	2 cut(s)	2073, 2320
BstYI	RGATCY	3 cut(s)	856, 1320, 2269
BstZ17I	GTATAC	1 cut(s)	938
BsuRI	GGCC	8 cut(s)	59, 341, 504, 987, 1116, 1721, 2004, 2189
BtgZI	GCGATG	3 cut(s)	282, 398, 1674
BtrI	CACGTC	1 cut(s)	1802
BtsCI	GGATG	4 cut(s)	217, 463, 577, 2145
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 442
BveI	ACCTGC	2 cut(s)	571, 1469
Cac8I	GCNNGC	6 cut(s)	1080, 1372, 1599, 1891, 1918, 1965
CciI	TCATGA	1 cut(s)	969
CfoI	GCGC	1 cut(s)	1376
Cfr13I	GGNCC	5 cut(s)	58, 340, 1719, 1720, 2155
CseI	GACGC	2 cut(s)	418, 1868
Csp6I	GTAC	5 cut(s)	112, 151, 217, 1755, 2293
CviQI	GTAC	5 cut(s)	112, 151, 217, 1755, 2293
DpnI	GATC	6 cut(s)	858, 1254, 1322, 1974, 2064, 2271
DpnII	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
DraIII	CACNNNGTG	1 cut(s)	187
EaeI	YGGCCR	3 cut(s)	1114, 2002, 2187
Eam1104I	CTCTTC	2 cut(s)	905, 1311
EarI	CTCTTC	2 cut(s)	905, 1311
Eco105I	TACGTA	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	1723
Eco31I	GGTCTC	2 cut(s)	1846, 2232
Eco47I	GGWCC	1 cut(s)	2155
Eco57I	CTGAAG	1 cut(s)	963
EcoO109I	RGGNCCY	1 cut(s)	1719
EcoRI	GAATTC	1 cut(s)	792
EcoRII	CCWGG	1 cut(s)	2272
EcoT38I	GRGCYC	1 cut(s)	1723
FalI	AAGNNNNNCTT	2 cut(s)	1331, 1363
FaqI	GGGAC	3 cut(s)	25, 1844, 2231
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	937
Fnu4HI	GCNGC	6 cut(s)	1083, 1290, 1329, 1344, 1894, 2133
FokI	GGATG	4 cut(s)	224, 470, 584, 2132
FriOI	GRGCYC	1 cut(s)	1723
Fsp4HI	GCNGC	6 cut(s)	1083, 1290, 1329, 1344, 1894, 2133
FspBI	CTAG	3 cut(s)	933, 1284, 2039
GlaI	GCGC	1 cut(s)	1375
GluI	GCNGC	6 cut(s)	1083, 1290, 1329, 1344, 1894, 2133
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	1325, 1332
HaeIII	GGCC	8 cut(s)	59, 341, 504, 987, 1116, 1721, 2004, 2189
HapII	CCGG	3 cut(s)	209, 1723, 2284
HgaI	GACGC	2 cut(s)	418, 1868
HhaI	GCGC	1 cut(s)	1376
Hin1I	GRCGYC	1 cut(s)	1860
Hin6I	GCGC	1 cut(s)	1374
HinP1I	GCGC	1 cut(s)	1374
HindIII	AAGCTT	3 cut(s)	1214, 1509, 1595
HinfI	GANTC	7 cut(s)	138, 657, 713, 764, 1000, 1300, 1994
HpaII	CCGG	3 cut(s)	209, 1723, 2284
HphI	GGTGA	4 cut(s)	602, 1112, 1718, 1820
Hpy166II	GTNNAC	2 cut(s)	217, 938
Hpy188I	TCNGA	7 cut(s)	288, 327, 394, 798, 999, 1005, 1635
Hpy188III	TCNNGA	7 cut(s)	353, 970, 1186, 1304, 1499, 1902, 1970
Hpy8I	GTNNAC	2 cut(s)	217, 938
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	5 cut(s)	49, 67, 460, 916, 2293
HpyCH4III	ACNGT	3 cut(s)	21, 835, 1759
HpyCH4IV	ACGT	4 cut(s)	97, 122, 419, 1801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	899, 1534, 1598, 2129
HpySE526I	ACGT	4 cut(s)	97, 122, 419, 1801
Hsp92I	GRCGYC	1 cut(s)	1860
HspAI	GCGC	1 cut(s)	1374
Kzo9I	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
LmnI	GCTCC	2 cut(s)	1960, 2176
Lsp1109I	GCAGC	6 cut(s)	1094, 1301, 1315, 1330, 1905, 2144
LweI	GCATC	5 cut(s)	259, 562, 1536, 1903, 2037
MaeI	CTAG	3 cut(s)	933, 1284, 2039
MaeII	ACGT	4 cut(s)	97, 122, 419, 1801
MaeIII	GTNAC	5 cut(s)	590, 613, 1060, 1759, 2249
MalI	GATC	6 cut(s)	858, 1254, 1322, 1974, 2064, 2271
MboI	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
MboII	GAAGA	9 cut(s)	851, 922, 1038, 1205, 1328, 1596, 1811, 2193, 2223
MfeI	CAATTG	2 cut(s)	62, 1269
MflI	RGATCY	3 cut(s)	856, 1320, 2269
MhlI	GDGCHC	3 cut(s)	1681, 1723, 1947
MlsI	TGGCCA	1 cut(s)	2189
MluNI	TGGCCA	1 cut(s)	2189
MlyI	GAGTC	4 cut(s)	132, 666, 773, 1009
MmeI	TCCRAC	2 cut(s)	435, 1442
Mox20I	TGGCCA	1 cut(s)	2189
MscI	TGGCCA	1 cut(s)	2189
MseI	TTAA	3 cut(s)	837, 1524, 1932
MslI	CAYNNNNRTG	4 cut(s)	1688, 1785, 1950, 2109
Msp20I	TGGCCA	1 cut(s)	2189
MspA1I	CMGCKG	2 cut(s)	1847, 2135
MspI	CCGG	3 cut(s)	209, 1723, 2284
MspR9I	CCNGG	2 cut(s)	1723, 2274
MunI	CAATTG	2 cut(s)	62, 1269
Mva1269I	GAATGC	5 cut(s)	232, 535, 1035, 1168, 2310
MvaI	CCWGG	1 cut(s)	2274
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	899, 1534, 1598, 2129
NciI	CCSGG	1 cut(s)	1723
NdeII	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
NlaIV	GGNNCC	6 cut(s)	405, 1720, 1721, 1962, 2157, 2271
NmuCI	GTSAC	2 cut(s)	590, 1060
NspI	RCATGY	5 cut(s)	547, 710, 827, 1089, 1390
PagI	TCATGA	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	5 cut(s)	232, 535, 1035, 1168, 2310
PfeI	GAWTC	3 cut(s)	713, 1300, 1994
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	6 cut(s)	1084, 1291, 1330, 1345, 1895, 2134
PleI	GAGTC	4 cut(s)	132, 665, 772, 1008
PpsI	GAGTC	4 cut(s)	132, 665, 772, 1008
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	2272
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	2272
PspN4I	GGNNCC	6 cut(s)	405, 1720, 1721, 1962, 2157, 2271
PspOMI	GGGCCC	1 cut(s)	1719
PspPI	GGNCC	5 cut(s)	58, 340, 1719, 1720, 2155
PsuI	RGATCY	3 cut(s)	856, 1320, 2269
PsyI	GACNNNGTC	1 cut(s)	656
PvuII	CAGCTG	2 cut(s)	1847, 2135
RsaI	GTAC	5 cut(s)	113, 152, 218, 1756, 2294
RsaNI	GTAC	5 cut(s)	112, 151, 217, 1755, 2293
RseI	CAYNNNNRTG	4 cut(s)	1688, 1785, 1950, 2109
SaqAI	TTAA	3 cut(s)	837, 1524, 1932
SatI	GCNGC	6 cut(s)	1083, 1290, 1329, 1344, 1894, 2133
Sau3AI	GATC	6 cut(s)	856, 1252, 1320, 1972, 2062, 2269
Sau96I	GGNCC	5 cut(s)	58, 340, 1719, 1720, 2155
SchI	GAGTC	4 cut(s)	132, 666, 773, 1009
ScrFI	CCNGG	2 cut(s)	1723, 2274
SduI	GDGCHC	3 cut(s)	1681, 1723, 1947
SfaNI	GCATC	5 cut(s)	259, 562, 1536, 1903, 2037
SfcI	CTRYAG	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	2155
SmiMI	CAYNNNNRTG	4 cut(s)	1688, 1785, 1950, 2109
SmlI	CTYRAG	2 cut(s)	506, 1497
SmoI	CTYRAG	2 cut(s)	506, 1497
SnaBI	TACGTA	1 cut(s)	98
SsiI	CCGC	6 cut(s)	69, 230, 272, 662, 902, 2149
SspI	AATATT	2 cut(s)	1929, 2194
SspMI	CTAG	3 cut(s)	933, 1284, 2039
StyD4I	CCNGG	2 cut(s)	1721, 2272
TaaI	ACNGT	3 cut(s)	21, 835, 1759
TaiI	ACGT	4 cut(s)	100, 125, 422, 1804
TaqI	TCGA	3 cut(s)	728, 1255, 1911
TatI	WGTACW	3 cut(s)	111, 150, 216
TfiI	GAWTC	3 cut(s)	713, 1300, 1994
Tru1I	TTAA	3 cut(s)	837, 1524, 1932
Tru9I	TTAA	3 cut(s)	837, 1524, 1932
TscAI	CASTG	2 cut(s)	372, 442
TseFI	GTSAC	2 cut(s)	590, 1060
TseI	GCWGC	6 cut(s)	1082, 1289, 1328, 1343, 1893, 2132
Tsp45I	GTSAC	2 cut(s)	590, 1060
TspGWI	ACGGA	1 cut(s)	2163
TspRI	CASTG	2 cut(s)	372, 442
Tth111I	GACNNNGTC	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	2155
XapI	RAATTY	3 cut(s)	792, 1492, 1726
XceI	RCATGY	5 cut(s)	547, 710, 827, 1089, 1390
XmiI	GTMKAC	1 cut(s)	937
XspI	CTAG	3 cut(s)	933, 1284, 2039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.