Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014296

Physical Location & Seq

Genomic Coordinates Reverse (-)

12596177 .. 12598454

Gene Structure 2278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAGTTTCGGGGTGTGCAACCTGATCGAACTACTTTGGCAATTGCTCTCAGCTCTAGTGCAGCAATGGGGATTCTGGAGGCTGGAGAAGAGATCCATGCTGCCTCACACAAGGCTGCCTTTGATACAGATATATATGTTGCAAGTGCACTTATTGGCATGTATTCAAAGTGTGGTAAGACAGAAATGGCAAAGCATATATTTCATAATATGCAAGAATTAGATGTTGTTTGTTGGAACTCTATGATAGCAGGTCTTTCACTAAATTCTCAAGATGAGGAAGCTTTCACTTACTTTAAGCAGATGAGGCAACATGAGATGCTTCCCTCCCAATTCTCTTATGCTACTATACTGAGTTGCTGTGCAAAGCTTGCTTCTTCATTTCAAGGGAAACAGGTTCATGCTCAGATAACAAAAGATGGATATGTGAGCGATGTTTTTGTTGGGAGTGCTCTCATTGGTATGTATTGCAAATGTGGTGATGTAGATGGGGCCCGGAATTTTTTTGATATGATGTCAAGCAAAAGTACGGTTACTTGGAATGAAATGATACATGGGTATGCACAGAATGGACGTGGAGATGAGGCTGTTCTTCTTTATTGGGACATGATTGCCTCAGCTGAGAGACCTGACGCCATTACTTTTGTTGCTGTTTTGACTGCTTGCAGCCATTCTGGATTGGTCGATGCAGGCATTGAAATATTTAATTCAATGGGGCACAAACATGGAGTGGAGCCAGTTCTGGATCATTACACTTGCATTATTGATTCTCTTGGCCGTGCTGGTCGTTTCCAAGAAGCAGAAGTCTTACTAGATGATATGCCATATAAAGATGATCCCGTTATATGGGAGGTTTTGCTTAGTTCTTGTAGGGTTCATGCTAATGTGAGCTTAGCGAAAAGAGCAGCTGACGAACTCATCCGCTTGGACCCATATAATTCAGCTCCATATGTGCTTTTGGCCAATATTTATTCTTCTTTAGGAAGATGGGACGAGGCAAGAGCTGTGAGAGATCTAATGAGTAACAAACAAGTCATCAAGGATCCAGGTTATAGCCGGATTGAGTACGAGAAGGGAATGCAATCCGGTATGGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

366

Amino Acids

40.43

Weight (kDa)

5.28

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 123	1.1e-08	PPR repeat family
PPR_2	PF13041	176 - 223	8e-10	PPR repeat family
PPR	PF01535	178 - 204	3.2e-06	PPR repeat
PPR_1	PF12854	243 - 274	4.7e-06	PPR repeat
E_motif	PF20431	293 - 355	3.2e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20770
fragaria_vesca	FvH4_3g11160
malus_domestica	MD10G1243200.v1.1
prunus_persica	Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1
pyrus_communis	pycom10g20340
rosa_chinensis	RchiOBHm_Chr5g0018061
rosa_laevigata	RLG00000032337
rosa_multiflora	Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059550
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5BG131500 Rh5CG143500 Rh5DG133200
rosa_wichuraiana	Rw5G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	242
AciI	CCGC	1 cut(s)	922
AclWI	GGATC	5 cut(s)	88, 753, 830, 1037, 1050
AcoI	YGGCCR	2 cut(s)	775, 960
AcsI	RAATTY	2 cut(s)	265, 499
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	2 cut(s)	529, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	846
AgsI	TTSAA	4 cut(s)	168, 386, 698, 711
AjiI	CACGTC	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	1045
AluBI	AGCT	8 cut(s)	54, 284, 370, 620, 891, 908, 944, 1004
AluI	AGCT	8 cut(s)	54, 284, 370, 620, 891, 908, 944, 1004
Alw21I	GWGCWC	2 cut(s)	151, 454
Alw26I	GTCTC	1 cut(s)	619
Alw44I	GTGCAC	1 cut(s)	147
AlwI	GGATC	5 cut(s)	88, 753, 830, 1037, 1050
AoxI	GGCC	3 cut(s)	492, 775, 960
ApaI	GGGCCC	1 cut(s)	496
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	5 cut(s)	62, 101, 116, 666, 905
ApoI	RAATTY	2 cut(s)	265, 499
AspS9I	GGNCC	3 cut(s)	492, 493, 928
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	928
BaeGI	GKGCMC	3 cut(s)	151, 496, 720
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BalI	TGGCCA	1 cut(s)	962
BamHI	GGATCC	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	496
Bbv12I	GWGCWC	2 cut(s)	151, 454
BbvCI	CCTCAGC	1 cut(s)	616
BbvI	GCAGC	5 cut(s)	74, 88, 103, 678, 917
BccI	CCATC	3 cut(s)	413, 482, 981
BceAI	ACGGC	1 cut(s)	762
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	1047
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	2 cut(s)	57, 812
BfuAI	ACCTGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	5 cut(s)	63, 102, 117, 667, 906
BlpI	GCTNAGC	1 cut(s)	892
BlsI	GCNGC	5 cut(s)	64, 103, 118, 668, 907
Bme1390I	CCNGG	2 cut(s)	496, 1047
Bme18I	GGWCC	1 cut(s)	928
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	492, 493, 928
BmiI	GGNNCC	5 cut(s)	493, 494, 735, 930, 1044
BmrFI	CCNGG	2 cut(s)	496, 1047
BmsI	GCATC	2 cut(s)	309, 676
BpmI	CTGGAG	2 cut(s)	98, 105
Bpu10I	CCTNAGC	1 cut(s)	616
Bpu1102I	GCTNAGC	1 cut(s)	892
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	619
BsaWI	WCCGGW	1 cut(s)	1085
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	1 cut(s)	737
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	1047
BseGI	GGATG	1 cut(s)	918
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	5 cut(s)	64, 344, 419, 612, 630
BseNI	ACTGG	1 cut(s)	737
BseSI	GKGCMC	3 cut(s)	151, 496, 720
BseXI	GCAGC	5 cut(s)	74, 88, 103, 678, 917
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	494, 777, 962
BsiHKAI	GWGCWC	2 cut(s)	151, 454
BsiSI	CCGG	3 cut(s)	496, 1057, 1086
BslFI	GGGAC	2 cut(s)	617, 1004
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	617, 1004
BsmI	GAATGC	1 cut(s)	1083
BsnI	GGCC	3 cut(s)	494, 777, 962
Bso31I	GGTCTC	1 cut(s)	619
Bsp120I	GGGCCC	1 cut(s)	492
Bsp1286I	GDGCHC	4 cut(s)	151, 454, 496, 720
Bsp143I	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
Bsp1720I	GCTNAGC	1 cut(s)	892
BspACI	CCGC	1 cut(s)	922
BspANI	GGCC	3 cut(s)	494, 777, 962
BspCNI	CTCAG	5 cut(s)	63, 345, 418, 613, 629
BspLI	GGNNCC	5 cut(s)	493, 494, 735, 930, 1044
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	5 cut(s)	88, 753, 830, 1037, 1050
BspTNI	GGTCTC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	737
BssMI	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
BssNI	GRCGYC	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	1047
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	633
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	372, 664, 691
BstDEI	CTNAG	7 cut(s)	50, 353, 405, 616, 621, 860, 892
BstF5I	GGATG	1 cut(s)	918
BstKTI	GATC	6 cut(s)	28, 96, 748, 838, 1015, 1045
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 371, 902
BstNI	CCWGG	1 cut(s)	1047
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	494, 1045
BstSLI	GKGCMC	3 cut(s)	151, 496, 720
BstV1I	GCAGC	5 cut(s)	74, 88, 103, 678, 917
BstX2I	RGATCY	3 cut(s)	93, 1012, 1042
BstYI	RGATCY	3 cut(s)	93, 1012, 1042
BsuRI	GGCC	3 cut(s)	494, 777, 962
BtgZI	GCGATG	1 cut(s)	447
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	918
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	372, 664, 691
Cfr13I	GGNCC	3 cut(s)	492, 493, 928
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	528, 1066
CviAII	CATG	8 cut(s)	98, 160, 314, 401, 554, 607, 725, 878
CviQI	GTAC	2 cut(s)	528, 1066
DdeI	CTNAG	7 cut(s)	50, 353, 405, 616, 621, 860, 892
DpnI	GATC	6 cut(s)	27, 95, 747, 837, 1014, 1044
DpnII	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
EaeI	YGGCCR	2 cut(s)	775, 960
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	1045
EcoT38I	GRGCYC	1 cut(s)	496
FaeI	CATG	8 cut(s)	101, 163, 317, 404, 557, 610, 728, 881
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	617, 1004
FatI	CATG	8 cut(s)	97, 159, 313, 400, 553, 606, 724, 877
FauNDI	CATATG	1 cut(s)	949
Fnu4HI	GCNGC	5 cut(s)	63, 102, 117, 667, 906
FokI	GGATG	1 cut(s)	905
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	5 cut(s)	63, 102, 117, 667, 906
FspBI	CTAG	2 cut(s)	57, 812
GluI	GCNGC	5 cut(s)	63, 102, 117, 667, 906
GsuI	CTGGAG	2 cut(s)	98, 105
HaeIII	GGCC	3 cut(s)	494, 777, 962
HapII	CCGG	3 cut(s)	496, 1057, 1086
HgaI	GACGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	8 cut(s)	101, 163, 317, 404, 557, 610, 728, 881
HindIII	AAGCTT	2 cut(s)	282, 368
HinfI	GANTC	2 cut(s)	73, 767
HpaII	CCGG	3 cut(s)	496, 1057, 1086
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	4 cut(s)	77, 272, 675, 743
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	1066
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 371, 902
HpyF3I	CTNAG	7 cut(s)	50, 353, 405, 616, 621, 860, 892
HpySE526I	ACGT	1 cut(s)	574
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	8 cut(s)	101, 163, 317, 404, 557, 610, 728, 881
Kzo9I	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
LmnI	GCTCC	2 cut(s)	733, 949
Lsp1109I	GCAGC	5 cut(s)	74, 88, 103, 678, 917
LweI	GCATC	2 cut(s)	309, 676
MaeI	CTAG	2 cut(s)	57, 812
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	2 cut(s)	532, 1022
MalI	GATC	6 cut(s)	27, 95, 747, 837, 1014, 1044
MboI	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
MboII	GAAGA	5 cut(s)	101, 369, 584, 966, 996
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	3 cut(s)	93, 1012, 1042
MhlI	GDGCHC	4 cut(s)	151, 454, 496, 720
MlsI	TGGCCA	1 cut(s)	962
MluCI	AATT	7 cut(s)	42, 218, 265, 332, 499, 706, 937
MluNI	TGGCCA	1 cut(s)	962
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	9 cut(s)	73, 115, 271, 300, 337, 577, 625, 844, 988
Mox20I	TGGCCA	1 cut(s)	962
MscI	TGGCCA	1 cut(s)	962
MseI	TTAA	2 cut(s)	297, 705
MslI	CAYNNNNRTG	4 cut(s)	461, 558, 723, 882
Msp20I	TGGCCA	1 cut(s)	962
MspA1I	CMGCKG	2 cut(s)	620, 908
MspI	CCGG	3 cut(s)	496, 1057, 1086
MspR9I	CCNGG	2 cut(s)	496, 1047
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	1083
MvaI	CCWGG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	3 cut(s)	307, 371, 902
NciI	CCSGG	1 cut(s)	496
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
NlaIII	CATG	8 cut(s)	101, 163, 317, 404, 557, 610, 728, 881
NlaIV	GGNNCC	5 cut(s)	493, 494, 735, 930, 1044
NspI	RCATGY	1 cut(s)	163
PctI	GAATGC	1 cut(s)	1083
PfeI	GAWTC	2 cut(s)	73, 767
PkrI	GCNGC	5 cut(s)	64, 103, 118, 668, 907
Psp6I	CCWGG	1 cut(s)	1045
PspGI	CCWGG	1 cut(s)	1045
PspN4I	GGNNCC	5 cut(s)	493, 494, 735, 930, 1044
PspOMI	GGGCCC	1 cut(s)	492
PspPI	GGNCC	3 cut(s)	492, 493, 928
PsuI	RGATCY	3 cut(s)	93, 1012, 1042
PvuII	CAGCTG	2 cut(s)	620, 908
RsaI	GTAC	2 cut(s)	529, 1067
RsaNI	GTAC	2 cut(s)	528, 1066
RseI	CAYNNNNRTG	4 cut(s)	461, 558, 723, 882
SaqAI	TTAA	2 cut(s)	297, 705
SatI	GCNGC	5 cut(s)	63, 102, 117, 667, 906
Sau3AI	GATC	6 cut(s)	25, 93, 745, 835, 1012, 1042
Sau96I	GGNCC	3 cut(s)	492, 493, 928
ScrFI	CCNGG	2 cut(s)	496, 1047
SduI	GDGCHC	4 cut(s)	151, 454, 496, 720
SfaNI	GCATC	2 cut(s)	309, 676
SinI	GGWCC	1 cut(s)	928
SmiMI	CAYNNNNRTG	4 cut(s)	461, 558, 723, 882
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	7 cut(s)	42, 218, 265, 332, 499, 706, 937
SsiI	CCGC	1 cut(s)	922
SspI	AATATT	2 cut(s)	702, 967
SspMI	CTAG	2 cut(s)	57, 812
StyD4I	CCNGG	2 cut(s)	494, 1045
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	28, 684
TasI	AATT	7 cut(s)	42, 218, 265, 332, 499, 706, 937
TfiI	GAWTC	2 cut(s)	73, 767
Tru1I	TTAA	2 cut(s)	297, 705
Tru9I	TTAA	2 cut(s)	297, 705
TseI	GCWGC	5 cut(s)	62, 101, 116, 666, 905
TspDTI	ATGAA	5 cut(s)	194, 369, 389, 558, 866
VneI	GTGCAC	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	2 cut(s)	265, 499
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	57, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.