Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213086.1

Orthogroup ID

OG0014296

Physical Location & Seq

Genomic Coordinates Forward (+)

32 .. 728

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213086.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 697 bp

atgcaatcttggggctttgaacctgatgaggtcacatatatcaatttgcttgcagcatgtgtcaagtctggtgatataaaaagtggccgtcaaatgtttgataacatttcatgcccaaatgtgatttcatggaatgcaatactctctggctatttccagaatgaagaccacatggaagtaatcaagcttttcagggaaatgcagtttcggggtgtgcaacctgatcgaactactttggcaattgctctcagctctagtgcagcaatggggattctggagggtggagaagagatccatgctgcctcacacaaggctgcctttgatacagatatatatgttgcaagcgcacttattggcatgtattcaaagtgtggtaagactgaaatggcaaagcatatatttcataatatgcaagaattagatgttgtttgttggaactctatgatagcaggtctttcactaaattctcaagatgaggaagctttcacttactttaagcagatgaggcaacatgagatgcttcccacccaattctcttatgctactatactgagttgctgtgcaaagcttgcttcttcatttcaagggaaacaggttcatgctcagataacaaaagatggatatgtgagcgatgtttttgttgggagtgctctcattggtatgtattgcaaatgtggtgatgtagatggggcccgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

232

Amino Acids

25.69

Weight (kDa)

5.31

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20770
fragaria_vesca	FvH4_3g11160
malus_domestica	MD10G1243200.v1.1
prunus_persica	Prupe.4G100900_v2.0.a1 Prupe.4G100900_v2.0.a1
pyrus_communis	pycom10g20340
rosa_chinensis	RchiOBHm_Chr5g0018061
rosa_laevigata	RLG00000032337
rosa_multiflora	Rmu_co8213086.1_g000001 Rmu_sc0010280.1_g000017 Rmu_sc0026609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059550
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5BG131500 Rh5CG143500 Rh5DG133200
rosa_wichuraiana	Rw5G011580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	20, 366, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	4 cut(s)	187, 252, 482, 568
AluI	AGCT	4 cut(s)	187, 252, 482, 568
Alw21I	GWGCWC	1 cut(s)	652
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	2 cut(s)	85, 690
ApaI	GGGCCC	1 cut(s)	694
ApeKI	GCWGC	4 cut(s)	53, 260, 299, 314
ApoI	RAATTY	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	690, 691
AsuC2I	CCSGG	1 cut(s)	694
AsuHPI	GGTGA	2 cut(s)	83, 689
BaeGI	GKGCMC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	4 cut(s)	65, 272, 286, 301
BccI	CCATC	2 cut(s)	611, 680
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BcnI	CCSGG	1 cut(s)	694
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	54, 261, 300, 315
BlsI	GCNGC	4 cut(s)	55, 262, 301, 316
Bme1390I	CCNGG	1 cut(s)	694
BmgT120I	GGNCC	2 cut(s)	690, 691
BmiI	GGNNCC	2 cut(s)	691, 692
BmrFI	CCNGG	1 cut(s)	694
BmsI	GCATC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	694
Bse3DI	GCAATG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	262, 542, 617
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	4 cut(s)	65, 272, 286, 301
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	87, 692
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	694
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	87, 692
Bsp120I	GGGCCC	1 cut(s)	690
Bsp1286I	GDGCHC	2 cut(s)	652, 694
Bsp143I	GATC	2 cut(s)	223, 291
BspANI	GGCC	2 cut(s)	87, 692
BspCNI	CTCAG	3 cut(s)	261, 543, 616
BspLI	GGNNCC	2 cut(s)	691, 692
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	270
BssMI	GATC	2 cut(s)	223, 291
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	51, 343, 570
BstDEI	CTNAG	3 cut(s)	248, 551, 603
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	226, 294
BstMBI	GATC	2 cut(s)	223, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 569
BstNSI	RCATGY	2 cut(s)	60, 361
BstSCI	CCNGG	1 cut(s)	692
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	65, 272, 286, 301
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	87, 692
BtgZI	GCGATG	1 cut(s)	645
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	3 cut(s)	51, 343, 570
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	690, 691
CviAII	CATG	8 cut(s)	57, 111, 129, 172, 296, 358, 512, 599
CviJI	RGCY	9 cut(s)	15, 87, 150, 187, 252, 314, 482, 568, 692
CviKI_1	RGCY	9 cut(s)	15, 87, 150, 187, 252, 314, 482, 568, 692
DdeI	CTNAG	3 cut(s)	248, 551, 603
DpnI	GATC	2 cut(s)	225, 293
DpnII	GATC	2 cut(s)	223, 291
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	694
FaeI	CATG	8 cut(s)	60, 114, 132, 175, 299, 361, 515, 602
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	8 cut(s)	56, 110, 128, 171, 295, 357, 511, 598
Fnu4HI	GCNGC	4 cut(s)	54, 261, 300, 315
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	4 cut(s)	54, 261, 300, 315
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	4 cut(s)	54, 261, 300, 315
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	87, 692
HapII	CCGG	1 cut(s)	694
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	8 cut(s)	60, 114, 132, 175, 299, 361, 515, 602
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	3 cut(s)	185, 480, 566
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	2 cut(s)	83, 689
Hpy188I	TCNGA	1 cut(s)	606
Hpy188III	TCNNGA	3 cut(s)	157, 275, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 569
HpyF3I	CTNAG	3 cut(s)	248, 551, 603
Hsp92II	CATG	8 cut(s)	60, 114, 132, 175, 299, 361, 515, 602
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	223, 291
LpnPI	CCDG	9 cut(s)	36, 54, 132, 170, 178, 234, 260, 435, 578
Lsp1109I	GCAGC	4 cut(s)	65, 272, 286, 301
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	225, 293
MboI	GATC	2 cut(s)	223, 291
MboII	GAAGA	3 cut(s)	176, 299, 567
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	2 cut(s)	652, 694
MluCI	AATT	5 cut(s)	43, 240, 416, 463, 530
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	5 cut(s)	22, 271, 313, 469, 498
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	1 cut(s)	694
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	505, 569
NciI	CCSGG	1 cut(s)	694
NdeII	GATC	2 cut(s)	223, 291
NlaIII	CATG	8 cut(s)	60, 114, 132, 175, 299, 361, 515, 602
NlaIV	GGNNCC	2 cut(s)	691, 692
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	2 cut(s)	60, 361
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	55, 262, 301, 316
PspN4I	GGNNCC	2 cut(s)	691, 692
PspOMI	GGGCCC	1 cut(s)	690
PspPI	GGNCC	2 cut(s)	690, 691
PsuI	RGATCY	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	54, 261, 300, 315
Sau3AI	GATC	2 cut(s)	223, 291
Sau96I	GGNCC	2 cut(s)	690, 691
ScrFI	CCNGG	1 cut(s)	694
SduI	GDGCHC	2 cut(s)	652, 694
SetI	ASST	9 cut(s)	25, 33, 189, 223, 254, 454, 484, 570, 597
SfaNI	GCATC	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	5 cut(s)	43, 240, 416, 463, 530
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	692
TaqI	TCGA	1 cut(s)	226
TasI	AATT	5 cut(s)	43, 240, 416, 463, 530
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	53, 260, 299, 314
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	6 cut(s)	99, 117, 177, 392, 567, 587
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	2 cut(s)	60, 361
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.