MD11G1160100.v1.1

Peptidylprolyl isomerase domain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009586
Physical Location & Seq
Forward (+)
15695667 .. 15713322
17656 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1160100.v1.1.491

Sequence Viewer

Length: 1896 bp
ATGGAGGAGCCTCAGAACGGAGGAGAAACCCTAGCAACAGACGTAGCCGAACCCCAGAACGGCGTGGCGGAGACCGAGGAGGAGCCCATGGTGGGTCCCGGCCCACCCCCACCCCCTCGCACTCGCCCCAAGCGGCCCCTCCAGTTCGAGCACGCCTACCTCGATGCTCTTCCCTCCGCTCAAATGTACGAGAAAAGTTATATGCACCGTGACGTTGTTACGCATGTTGCTGTGTCAACGGCGGATTTTGTTGTAACTGGAAGCATTGATGGACATTTGAAGTTTTGGAAGAAAAAGGCTGTTGGCATTGAGTTTGCAAAGCATTTTAGGTCCCACCTTGGTCCAATTGAAGGCTTAGCTGTTAGTGTTGATGGTTTGCTTTGCTGTACAATTTCAAATGACAAGTCTGTGAAGATATATGATGTAGTCAACTACGATATGATGGTCATGATTCGCACAGAGTTTGTTCCTGGTGCTGTTGAGTGGGTCTACAAACAAGGGGATGTCAAAGCCAGGCTTGCCATCAGTGACAGGAACTCGTCATATGTACACATTTTCGATGCACGATCTGGTACAAATGAACCTATTATCTCCAGAGAGGTACACTTGGGCCCAGTGAAAGTTATGAGGTATAATCCTGTATTTGATACAGTGATTTCAGCTGATCAACAGGGAATGATCGAGTATTGGAGTCCTGACACCCTTAAGTTTCCAGAGACTGGGGTGAAGTTCAGAATGAAAAGTGATACTAATCTTTTTGAAATCCCGAAATGCAAAACTACCGTTTCTTCTATCGAGGTTAGCCCAGATGGTAAGCAATTTTCGATTACATCGCCTGATCGCAGGATTCGTGTATTTTGGTTTAGCACAGGAAAACTACGACGAGTTTATGATGAAACTCTTGAGGTGGCCCAAGATCTCCAAAGAAGTGATGTGCCTTTGTACCAGCTGGAAGCTATTGACTTTGGGCGAAGAATGGCTGTTGAGAGGGAAATTGAGAAAACAGAATCTGCCCCACAGCCGAATGCAGTTTTTGATGAAAGCTCAAATTTTCTCATATATGCAACTCTCCTTGGAATAAAAGTGGTAAATTTACACACTAATAAAGTTTCCCGAATTTTCGGAAAAGTGGAGAATAATGATAGGTTTTTGAGAATTGCCTTGTACCAAGGTGACAGAAGCAGTAAAAAAGTTAGAAAAATTCCTGCTGCTGCAGCAAATGTTAATGAAAGCAAAGAGCCTTTGACAGATCCTACTCTCATATGTTGCGCTTTCAAAAAACACAGAATCTATCTATTCAGTCAGAGAGAACCAGAGGAGCCTGAAGATGCAACCAAGGGAAGAGATATATTCAACGAAAAGCCTCCTGCTGATGAACTCTTGGCTGCATCAGAGATTGGTAAATCAGCTACAACATCTCTTCCTGACAATGTGATTTTGCGAACTACAATGGGTGACATACACATGAAATTGTATCCAGAGGAATGCCCAAAAACTGTGGAGAACTTCACAACACACTGCCGAAATGGCTATTATGATAACCTCATATTTCACAGAGTCATCAAAGGTTTCATGATACAAACAGGAGATCCTTTAGGAGATGGTACTGGTGGGCAATCTATTTGGGGACGGGAGTTTGAGGATGAATTTCATAAAAGTTTACGACATGACAGGCCTTTCACTGTATCAATGGCAAATGCGGGCGAAAACACAAATGGATCTCAGTTCTTTATCACCACAGTGGCTACTCCCTGGCTTGACAACAAGCACACAGTTTTTGGCAGAGTTATCAAGGGGATGGATGTCGTGCAGGCTATAGAAAAAGTGAAGACAGACAGGGGAGAAAGGCCCCAAGTAGACGTGAAAATTCTGAATGTTACTGTCCCCAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase WD40

Protein Analysis

632

Amino Acids

71.1

Weight (kDa)

6.2

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 60 - 210 2.1e-08 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 68 - 236 9.8e-10 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 69 - 299 7.3e-14 THOC3 beta-propeller domain
WDR55 PF24796 73 - 231 8.1e-07 WDR55
Pro_isomerase PF00160 479 - 628 5e-56 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 719
AccBSI CCGCTC 1 cut(s) 179
AccI GTMKAC 2 cut(s) 489, 1857
AciI CCGC 5 cut(s) 68, 133, 177, 242, 1700
AclWI GGATC 3 cut(s) 1244, 1583, 1726
AcsI RAATTY 6 cut(s) 1048, 1090, 1116, 1200, 1646, 1866
AcuI CTGAAG 1 cut(s) 1344
AfaI GTAC 8 cut(s) 188, 388, 549, 574, 603, 944, 1166, 1606
AfiI CCNNNNNNNGG 5 cut(s) 17, 59, 92, 350, 719
AflII CTTAAG 1 cut(s) 704
AgsI TTSAA 6 cut(s) 280, 350, 396, 761, 1276, 1354
AjiI CACGTC 1 cut(s) 1861
AjnI CCWGG 3 cut(s) 469, 512, 1751
AleI CACNNNNGTG 1 cut(s) 1739
AluBI AGCT 6 cut(s) 359, 662, 949, 956, 1044, 1409
AluI AGCT 6 cut(s) 359, 662, 949, 956, 1044, 1409
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 65, 710
AlwI GGATC 3 cut(s) 1244, 1583, 1726
AlwNI CAGNNNCTG 2 cut(s) 719, 1010
AoxI GGCC 6 cut(s) 100, 134, 610, 909, 1673, 1847
ApaI GGGCCC 1 cut(s) 614
ApeKI GCWGC 4 cut(s) 1208, 1211, 1214, 1385
ApoI RAATTY 6 cut(s) 1048, 1090, 1116, 1200, 1646, 1866
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 1 cut(s) 1271
AspS9I GGNCC 9 cut(s) 95, 101, 135, 330, 341, 610, 611, 910, 1848
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 4 cut(s) 736, 1184, 1466, 1726
AvaII GGWCC 3 cut(s) 95, 330, 341
BaeGI GKGCMC 1 cut(s) 614
BanII GRGCYC 2 cut(s) 87, 614
BbsI GAAGAC 1 cut(s) 1835
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 1195, 1198, 1226, 1372
BccI CCATC 7 cut(s) 263, 365, 436, 530, 803, 1595, 1792
BceAI ACGGC 2 cut(s) 76, 255
BciT130I CCWGG 3 cut(s) 471, 514, 1753
BciVI GTATCC 1 cut(s) 1485
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 65, 710
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 2 cut(s) 1212, 1815
BfrI CTTAAG 1 cut(s) 704
BfuI GTATCC 1 cut(s) 1485
BglI GCCNNNNNGGC 1 cut(s) 1527
BglII AGATCT 1 cut(s) 916
BisI GCNGC 5 cut(s) 134, 1209, 1212, 1215, 1386
BlpI GCTNAGC 1 cut(s) 355
BlsI GCNGC 5 cut(s) 135, 1210, 1213, 1216, 1387
Bme1390I CCNGG 4 cut(s) 99, 471, 514, 1753
Bme18I GGWCC 3 cut(s) 95, 330, 341
BmgBI CACGTC 1 cut(s) 1861
BmgT120I GGNCC 9 cut(s) 95, 101, 135, 330, 341, 610, 611, 910, 1848
BmiI GGNNCC 9 cut(s) 9, 84, 96, 97, 137, 332, 612, 1320, 1850
BmrFI CCNGG 4 cut(s) 99, 471, 514, 1753
BmrI ACTGGG 2 cut(s) 608, 729
BmsI GCATC 4 cut(s) 154, 550, 1318, 1397
BmuI ACTGGG 2 cut(s) 608, 729
BpiI GAAGAC 1 cut(s) 1835
BpmI CTGGAG 2 cut(s) 125, 577
Bpu1102I GCTNAGC 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 7 cut(s) 75, 87, 337, 1072, 1168, 1335, 1751
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 59, 92, 350, 719
Bse1I ACTGG 5 cut(s) 142, 262, 614, 724, 1612
Bse8I GATNNNNATC 1 cut(s) 750
BseBI CCWGG 3 cut(s) 471, 514, 1753
BseDI CCNNGG 7 cut(s) 75, 87, 337, 1072, 1168, 1335, 1751
BseGI GGATG 4 cut(s) 508, 1648, 1803, 1807
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 5 cut(s) 17, 59, 92, 350, 719
BseMII CTCAG 2 cut(s) 26, 1736
BseNI ACTGG 5 cut(s) 142, 262, 614, 724, 1612
BseRI GAGGAG 5 cut(s) 20, 36, 92, 95, 1331
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 4 cut(s) 1195, 1198, 1226, 1372
BsgI GTGCAG 1 cut(s) 1829
BshFI GGCC 6 cut(s) 102, 136, 612, 911, 1675, 1849
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 4 cut(s) 81, 316, 1641, 1868
BslI CCNNNNNNNGG 5 cut(s) 17, 59, 92, 350, 719
BsmAI GTCTC 2 cut(s) 65, 710
BsmFI GGGAC 4 cut(s) 81, 316, 1641, 1868
BsmI GAATGC 2 cut(s) 1030, 1490
BsnI GGCC 6 cut(s) 102, 136, 612, 911, 1675, 1849
Bso31I GGTCTC 1 cut(s) 65
Bsp120I GGGCCC 1 cut(s) 610
Bsp1286I GDGCHC 3 cut(s) 87, 153, 614
Bsp1407I TGTACA 2 cut(s) 386, 547
Bsp143I GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
Bsp1720I GCTNAGC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 5 cut(s) 68, 133, 177, 242, 1700
BspANI GGCC 6 cut(s) 102, 136, 612, 911, 1675, 1849
BspCNI CTCAG 2 cut(s) 25, 1735
BspHI TCATGA 2 cut(s) 447, 1572
BspLI GGNNCC 9 cut(s) 9, 84, 96, 97, 137, 332, 612, 1320, 1850
BspMAI CTGCAG 1 cut(s) 1216
BspPI GGATC 3 cut(s) 1244, 1583, 1726
BspQI GCTCTTC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 179
BsrGI TGTACA 2 cut(s) 386, 547
BsrI ACTGG 5 cut(s) 142, 262, 614, 724, 1612
BssECI CCNNGG 7 cut(s) 75, 87, 337, 1072, 1168, 1335, 1751
BssMI GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
BssT1I CCWWGG 5 cut(s) 87, 337, 1072, 1168, 1335
Bst2UI CCWGG 3 cut(s) 471, 514, 1753
Bst4CI ACNGT 8 cut(s) 209, 652, 784, 1498, 1684, 1741, 1774, 1882
Bst6I CTCTTC 3 cut(s) 174, 1336, 1425
BstAFI CTTAAG 1 cut(s) 704
BstAUI TGTACA 2 cut(s) 386, 547
BstC8I GCNNGC 4 cut(s) 153, 519, 1702, 1812
BstDEI CTNAG 3 cut(s) 12, 355, 1722
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 4 cut(s) 508, 1648, 1803, 1807
BstHHI GCGC 1 cut(s) 1271
BstKTI GATC 8 cut(s) 569, 667, 681, 841, 919, 1252, 1591, 1721
BstMAI GTCTC 2 cut(s) 65, 710
BstMBI GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
BstMWI GCNNNNNNNGC 3 cut(s) 518, 1214, 1527
BstNI CCWGG 3 cut(s) 471, 514, 1753
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 4 cut(s) 97, 469, 512, 1751
BstSFI CTRYAG 2 cut(s) 1212, 1815
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 4 cut(s) 1195, 1198, 1226, 1372
BstV2I GAAGAC 1 cut(s) 1835
BstX2I RGATCY 4 cut(s) 916, 1249, 1588, 1718
BstYI RGATCY 4 cut(s) 916, 1249, 1588, 1718
BsuI GTATCC 1 cut(s) 1485
BsuRI GGCC 6 cut(s) 102, 136, 612, 911, 1675, 1849
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 816
BtrI CACGTC 1 cut(s) 1861
BtsCI GGATG 4 cut(s) 508, 1648, 1803, 1807
BtsI GCAGTG 1 cut(s) 1516
BtsIMutI CAGTG 6 cut(s) 532, 621, 657, 1516, 1680, 1746
Cac8I GCNNGC 4 cut(s) 153, 519, 1702, 1812
CaiI CAGNNNCTG 2 cut(s) 719, 1010
CciI TCATGA 2 cut(s) 447, 1572
CfoI GCGC 1 cut(s) 1271
Cfr13I GGNCC 9 cut(s) 95, 101, 135, 330, 341, 610, 611, 910, 1848
Csp6I GTAC 8 cut(s) 187, 387, 548, 573, 602, 943, 1165, 1605
CspCI CAANNNNNGTGG 2 cut(s) 1479, 1514
CviAII CATG 6 cut(s) 88, 224, 448, 1465, 1573, 1667
CviQI GTAC 8 cut(s) 187, 387, 548, 573, 602, 943, 1165, 1605
DdeI CTNAG 3 cut(s) 12, 355, 1722
DpnI GATC 8 cut(s) 568, 666, 680, 840, 918, 1251, 1590, 1720
DpnII GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
Eam1104I CTCTTC 3 cut(s) 174, 1336, 1425
EarI CTCTTC 3 cut(s) 174, 1336, 1425
EciI GGCGGA 2 cut(s) 83, 257
Eco130I CCWWGG 5 cut(s) 87, 337, 1072, 1168, 1335
Eco147I AGGCCT 1 cut(s) 1675
Eco24I GRGCYC 2 cut(s) 87, 614
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 3 cut(s) 95, 330, 341
Eco57I CTGAAG 1 cut(s) 1344
EcoO109I RGGNCCY 3 cut(s) 95, 330, 1848
EcoRII CCWGG 3 cut(s) 469, 512, 1751
EcoT14I CCWWGG 5 cut(s) 87, 337, 1072, 1168, 1335
EcoT38I GRGCYC 2 cut(s) 87, 614
ErhI CCWWGG 5 cut(s) 87, 337, 1072, 1168, 1335
FaeI CATG 6 cut(s) 91, 227, 451, 1468, 1576, 1670
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 4 cut(s) 81, 316, 1641, 1868
FatI CATG 6 cut(s) 87, 223, 447, 1464, 1572, 1666
FauI CCCGC 1 cut(s) 1693
FauNDI CATATG 2 cut(s) 544, 1262
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 2 cut(s) 489, 1857
Fnu4HI GCNGC 5 cut(s) 134, 1209, 1212, 1215, 1386
FokI GGATG 4 cut(s) 515, 1655, 1810, 1814
FriOI GRGCYC 2 cut(s) 87, 614
Fsp4HI GCNGC 5 cut(s) 134, 1209, 1212, 1215, 1386
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 1270
GluI GCNGC 5 cut(s) 134, 1209, 1212, 1215, 1386
GsuI CTGGAG 2 cut(s) 125, 577
HaeIII GGCC 6 cut(s) 102, 136, 612, 911, 1675, 1849
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 1271
Hin1II CATG 6 cut(s) 91, 227, 451, 1468, 1576, 1670
Hin6I GCGC 1 cut(s) 1269
HinP1I GCGC 1 cut(s) 1269
HincII GTYRAC 2 cut(s) 237, 430
HindII GTYRAC 2 cut(s) 237, 430
HinfI GANTC 6 cut(s) 451, 691, 847, 1007, 1287, 1557
HpaII CCGG 1 cut(s) 99
HphI GGTGA 4 cut(s) 736, 1184, 1466, 1726
Hpy166II GTNNAC 7 cut(s) 237, 430, 490, 550, 604, 1661, 1858
Hpy188I TCNGA 6 cut(s) 15, 734, 1124, 1305, 1393, 1872
Hpy8I GTNNAC 7 cut(s) 237, 430, 490, 550, 604, 1661, 1858
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 8 cut(s) 209, 652, 784, 1498, 1684, 1741, 1774, 1882
HpyCH4IV ACGT 3 cut(s) 42, 213, 1860
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 1214, 1527
HpyF3I CTNAG 3 cut(s) 12, 355, 1722
HpySE526I ACGT 3 cut(s) 42, 213, 1860
Hsp92II CATG 6 cut(s) 91, 227, 451, 1468, 1576, 1670
HspAI GCGC 1 cut(s) 1269
KflI GGGWCCC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 3 cut(s) 7, 82, 1318
Lsp1109I GCAGC 4 cut(s) 1195, 1198, 1226, 1372
LweI GCATC 4 cut(s) 154, 550, 1318, 1397
MaeI CTAG 1 cut(s) 32
MaeII ACGT 3 cut(s) 42, 213, 1860
MaeIII GTNAC 7 cut(s) 209, 217, 253, 527, 1172, 1454, 1876
MalI GATC 8 cut(s) 568, 666, 680, 840, 918, 1251, 1590, 1720
MbiI CCGCTC 1 cut(s) 179
MboI GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
MboII GAAGA 9 cut(s) 161, 301, 424, 780, 984, 1337, 1353, 1412, 1840
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 4 cut(s) 916, 1249, 1588, 1718
MhlI GDGCHC 3 cut(s) 87, 153, 614
MlyI GAGTC 2 cut(s) 700, 1566
MseI TTAA 3 cut(s) 705, 1224, 1894
MslI CAYNNNNRTG 2 cut(s) 1463, 1739
MspA1I CMGCKG 2 cut(s) 662, 949
MspCI CTTAAG 1 cut(s) 704
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 4 cut(s) 99, 471, 514, 1753
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 2 cut(s) 1030, 1490
MvaI CCWGG 3 cut(s) 471, 514, 1753
MwoI GCNNNNNNNGC 3 cut(s) 518, 1214, 1527
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 2 cut(s) 544, 1262
NdeII GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
NlaIII CATG 6 cut(s) 91, 227, 451, 1468, 1576, 1670
NlaIV GGNNCC 9 cut(s) 9, 84, 96, 97, 137, 332, 612, 1320, 1850
NmuCI GTSAC 4 cut(s) 209, 527, 1172, 1454
NspI RCATGY 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 1739
PagI TCATGA 2 cut(s) 447, 1572
PceI AGGCCT 1 cut(s) 1675
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 847
PctI GAATGC 2 cut(s) 1030, 1490
PfeI GAWTC 4 cut(s) 451, 847, 1007, 1287
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 5 cut(s) 135, 1210, 1213, 1216, 1387
PleI GAGTC 2 cut(s) 699, 1565
PpsI GAGTC 2 cut(s) 699, 1565
PpuMI RGGWCCY 2 cut(s) 95, 330
Psp5II RGGWCCY 2 cut(s) 95, 330
Psp6I CCWGG 3 cut(s) 469, 512, 1751
PspGI CCWGG 3 cut(s) 469, 512, 1751
PspN4I GGNNCC 9 cut(s) 9, 84, 96, 97, 137, 332, 612, 1320, 1850
PspOMI GGGCCC 1 cut(s) 610
PspPI GGNCC 9 cut(s) 95, 101, 135, 330, 341, 610, 611, 910, 1848
PspPPI RGGWCCY 2 cut(s) 95, 330
PstI CTGCAG 1 cut(s) 1216
PstNI CAGNNNCTG 2 cut(s) 719, 1010
PsuI RGATCY 4 cut(s) 916, 1249, 1588, 1718
PvuII CAGCTG 2 cut(s) 662, 949
RsaI GTAC 8 cut(s) 188, 388, 549, 574, 603, 944, 1166, 1606
RsaNI GTAC 8 cut(s) 187, 387, 548, 573, 602, 943, 1165, 1605
RseI CAYNNNNRTG 2 cut(s) 1463, 1739
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 705, 1224, 1894
SatI GCNGC 5 cut(s) 134, 1209, 1212, 1215, 1386
Sau3AI GATC 8 cut(s) 566, 664, 678, 838, 916, 1249, 1588, 1718
Sau96I GGNCC 9 cut(s) 95, 101, 135, 330, 341, 610, 611, 910, 1848
SchI GAGTC 2 cut(s) 700, 1566
ScrFI CCNGG 4 cut(s) 99, 471, 514, 1753
SduI GDGCHC 3 cut(s) 87, 153, 614
SfaNI GCATC 4 cut(s) 154, 550, 1318, 1397
SfcI CTRYAG 2 cut(s) 1212, 1815
SinI GGWCC 3 cut(s) 95, 330, 341
SmiMI CAYNNNNRTG 2 cut(s) 1463, 1739
SmlI CTYRAG 2 cut(s) 704, 902
SmoI CTYRAG 2 cut(s) 704, 902
SseBI AGGCCT 1 cut(s) 1675
SsiI CCGC 5 cut(s) 68, 133, 177, 242, 1700
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 1675
StyD4I CCNGG 4 cut(s) 97, 469, 512, 1751
StyI CCWWGG 5 cut(s) 87, 337, 1072, 1168, 1335
TaaI ACNGT 8 cut(s) 209, 652, 784, 1498, 1684, 1741, 1774, 1882
TaiI ACGT 3 cut(s) 45, 216, 1863
TaqI TCGA 6 cut(s) 147, 162, 558, 681, 795, 824
TaqII GACCGA 1 cut(s) 89
TatI WGTACW 2 cut(s) 386, 547
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 4 cut(s) 451, 847, 1007, 1287
Tru1I TTAA 3 cut(s) 705, 1224, 1894
Tru9I TTAA 3 cut(s) 705, 1224, 1894
TscAI CASTG 6 cut(s) 532, 621, 657, 1523, 1687, 1746
TseFI GTSAC 4 cut(s) 209, 527, 1172, 1454
TseI GCWGC 4 cut(s) 1208, 1211, 1214, 1385
Tsp45I GTSAC 4 cut(s) 209, 527, 1172, 1454
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 6 cut(s) 532, 621, 657, 1523, 1687, 1746
Van91I CCANNNNNTGG 1 cut(s) 719
Vha464I CTTAAG 1 cut(s) 704
VpaK11BI GGWCC 3 cut(s) 95, 330, 341
XapI RAATTY 6 cut(s) 1048, 1090, 1116, 1200, 1646, 1866
XceI RCATGY 1 cut(s) 227
XmiI GTMKAC 2 cut(s) 489, 1857
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.