Rroxscaffold_1G00037390

Peptidylprolyl isomerase domain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009586
Physical Location & Seq
Forward (+)
54545873 .. 54554378
8506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00037390.1

Sequence Viewer

Length: 1860 bp
ATGGAGGAGGAGCCTCAGAACGGTAACACGATCGCGGCGGAGAGTGAGGAGGAGCCGATAGTCGGGCCTGGCCCAGCTCCTCGAGCTCGGCCCAAGCGCCCTCTTCAGTTCGAGCAGGCTTACCTCGACTCCCTCCCCTCCGCTCTCATGTATGAAAAGAGTTATATGCACCGGGATGTGGTTACTCATGTTGCTGTGTCCGCGGCTGAATTTGTCATCACTGGAAGTGTTGATGGACATTTGAAGTTTTGGAAGAAAAAGCCCCTTGGCATTGAATTTGCGAAGCATTTTAGGTCCCACCTTGGTCCCATTGAAGGCCTAGCTGTTAGTGCTGATGGTTTGCTTTGCTGTACAATTTCAAATGATCCCTCTGTGAAGATATATGATGTTGTCAACTATGATATGATGGCCATGATTCACACATCCTTTGTTCCTGGTGCTGTTGAGTGGGTCTACAAACAAGGGGATGTCAAAGCCAGGCTTGCCATCAGTGATAGAAACTCATCATCTGTACACATTTTTGATGCACGGGCTGGCACAAATGAACCTTTAATCTCCAAAAAGATACACTTGGGGCCATTGAAACTCATGAGATACAATCATGAATATGACACTGTCATATCAGCTGACGAGAAGGGAATGATTGAGTATTGGAATCCCGCTACACTTGAGTTCCCAGAGAGAGGGATGAAATTTAGATTCAAAAGTGACACGAATCTCTTCGATATTGTGAAATGCAAAACTTCAGTTTCTTCTATTGAGGTTAGCCCAGATGGTAAACAATTTTCGGTTACGTCACCTGACCGTAGGATACGTGTATTTTGGTTTCTAACGGGTAAAATACGACGAGTTTATGATGAATCTCTCGAGGTGGCCCAAGATCTTCAAAGAAGTGACATACCTTTGTACCAGCTGGAAGCTATTGACTTCGGTCGAAGAATGGCTGTTGAGAAAGAAATAGAGAAAACAGAAACTGCTCCACAGCCGAATGCAGTTTTTGATGAAAGTTCAAATTTTCTTATTTATCCAACTCTGCTTGGGATAAAAGTGGTAAACCTACACACTAATAAAGTTGCCCGGATTCTAGGAAAAGTGGAAAACAATGATAGGTTTTTGAGAATTGCCTTATACCAAGGTGACAGAAGCAGTAAAAAAGTTAGAAAAATTCCTGCAGCTGCAGCAAATGTCAATGAGAGCAAAGAGCCTCTGTCAGATCCCACTCTCATCTGTTGTGCCTTCAAGAAACACAGAATCTATCTATTTAGTCAGAGAGAGCCAGAAGAGCCTGAAGATGCAACCAAGGGAAGAGATGTGTTCAATGAGAAGCCTCCTGCTGATGAACTCTTGGCTGCATCTGATATAGGCAAATCAGTCACGACATCCCTTCCTGACAATGTGATTATGCATACTACAATGGGAGACATACACATGAAGTTGTATCCAGAGGAATGCCCTAAAACTGTGGAGAACTTCACAACGCACTGTCGGAATGGCTATTATGATAACCTCATATTTCATCGAGTCATCAAAGGTTTCATGATACAAACAGGAGATCCTTTAGGAGATGGTACAGGTGGGCAATCCATTTGGGGAAGGGAGTTTGAGGATGAATTTCACAAAAGTTTACGACATGATAGGCCTTTTACTGTATCAATGGCAAATGCTGGCCCAAACACAAATGGATCTCAGTTCTTTATCACCACAGTGGCTACTCCTTGGCTGGACAACAAGCACACAGTTTTCGGAAGAGTGATCAAGGGAATGGATGTCGTTCAGGCTATAGAAAAAGTAAAGACAAACAAGGATGACAAACCACACCAAGATGTGAAAATTCTAAATGTTACTGTCCCCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase WD40

Protein Analysis

619

Amino Acids

69.74

Weight (kDa)

6.46

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 56 - 222 1.8e-09 WDR5 beta-propeller domain
WD40_Prp19 PF24814 56 - 199 7.3e-07 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 57 - 283 7.9e-13 THOC3 beta-propeller domain
Pro_isomerase PF00160 466 - 616 3.2e-57 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 453
AccII CGCG 2 cut(s) 35, 203
AciI CCGC 6 cut(s) 35, 38, 141, 201, 203, 660
AclWI GGATC 4 cut(s) 359, 1208, 1547, 1690
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 7 cut(s) 209, 275, 692, 1012, 1164, 1610, 1830
AcuI CTGAAG 3 cut(s) 89, 729, 1308
AfaI GTAC 4 cut(s) 352, 513, 908, 1570
AfiI CCNNNNNNNGG 5 cut(s) 20, 62, 178, 314, 683
AflIII ACRYGT 1 cut(s) 814
AjnI CCWGG 3 cut(s) 67, 433, 476
AleI CACNNNNGTG 1 cut(s) 1703
AluBI AGCT 7 cut(s) 77, 86, 323, 626, 913, 920, 1175
AluI AGCT 7 cut(s) 77, 86, 323, 626, 913, 920, 1175
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 1413
AlwI GGATC 4 cut(s) 359, 1208, 1547, 1690
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 2 cut(s) 81, 866
AoxI GGCC 9 cut(s) 65, 70, 89, 316, 408, 575, 873, 1637, 1666
ApeKI GCWGC 4 cut(s) 1172, 1175, 1178, 1349
ApoI RAATTY 7 cut(s) 209, 275, 692, 1012, 1164, 1610, 1830
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 8 cut(s) 65, 71, 90, 294, 305, 575, 874, 1667
AsuC2I CCSGG 2 cut(s) 173, 1078
AsuHPI GGTGA 3 cut(s) 789, 1148, 1690
AvaI CYCGRG 2 cut(s) 81, 866
AvaII GGWCC 2 cut(s) 294, 305
BaeI ACNNNNGTAYC 2 cut(s) 890, 923
BalI TGGCCA 1 cut(s) 410
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 4 cut(s) 1162, 1184, 1190, 1336
BccI CCATC 6 cut(s) 227, 329, 400, 494, 767, 1559
BciT130I CCWGG 3 cut(s) 69, 435, 478
BciVI GTATCC 2 cut(s) 804, 1449
BclI TGATCA 1 cut(s) 1752
BcnI CCSGG 2 cut(s) 173, 1078
BcoDI GTCTC 1 cut(s) 1413
BfaI CTAG 2 cut(s) 320, 1085
BfmI CTRYAG 3 cut(s) 1170, 1176, 1779
BfoI RGCGCY 1 cut(s) 100
BfuI GTATCC 2 cut(s) 804, 1449
BglII AGATCT 1 cut(s) 880
BisI GCNGC 6 cut(s) 36, 204, 1173, 1176, 1179, 1350
BlsI GCNGC 6 cut(s) 37, 205, 1174, 1177, 1180, 1351
Bme1390I CCNGG 5 cut(s) 69, 173, 435, 478, 1078
Bme18I GGWCC 2 cut(s) 294, 305
BmeT110I CYCGRG 2 cut(s) 81, 866
BmgT120I GGNCC 8 cut(s) 65, 71, 90, 294, 305, 575, 874, 1667
BmiI GGNNCC 5 cut(s) 12, 54, 296, 307, 576
BmrFI CCNGG 5 cut(s) 69, 173, 435, 478, 1078
BmsI GCATC 3 cut(s) 514, 1282, 1361
BoxI GACNNNNGTC 1 cut(s) 930
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 2 cut(s) 173, 1078
BsaAI YACGTR 1 cut(s) 815
BsaJI CCNNGG 6 cut(s) 201, 265, 301, 1132, 1299, 1715
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 62, 178, 314, 683
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 3 cut(s) 69, 435, 478
BseDI CCNNGG 6 cut(s) 201, 265, 301, 1132, 1299, 1715
BseGI GGATG 8 cut(s) 181, 422, 472, 693, 1379, 1612, 1771, 1810
BseLI CCNNNNNNNGG 5 cut(s) 20, 62, 178, 314, 683
BseMII CTCAG 2 cut(s) 29, 1700
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 5 cut(s) 20, 23, 62, 65, 69
BseXI GCAGC 4 cut(s) 1162, 1184, 1190, 1336
BseYI CCCAGC 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 35, 203
Bsh1285I CGRYCG 2 cut(s) 33, 934
BshFI GGCC 9 cut(s) 67, 72, 91, 318, 410, 577, 875, 1639, 1668
BsiEI CGRYCG 2 cut(s) 33, 934
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 2 cut(s) 81, 866
BsiSI CCGG 2 cut(s) 172, 1078
BslFI GGGAC 3 cut(s) 280, 291, 1832
BslI CCNNNNNNNGG 5 cut(s) 20, 62, 178, 314, 683
BsmAI GTCTC 1 cut(s) 1413
BsmFI GGGAC 3 cut(s) 280, 291, 1832
BsmI GAATGC 2 cut(s) 994, 1454
BsnI GGCC 9 cut(s) 67, 72, 91, 318, 410, 577, 875, 1639, 1668
BsoBI CYCGRG 2 cut(s) 81, 866
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1407I TGTACA 2 cut(s) 350, 511
Bsp143I GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
BspACI CCGC 6 cut(s) 35, 38, 141, 201, 203, 660
BspANI GGCC 9 cut(s) 67, 72, 91, 318, 410, 577, 875, 1639, 1668
BspCNI CTCAG 2 cut(s) 28, 1699
BspFNI CGCG 2 cut(s) 35, 203
BspHI TCATGA 3 cut(s) 588, 601, 1536
BspLI GGNNCC 5 cut(s) 12, 54, 296, 307, 576
BspMAI CTGCAG 2 cut(s) 1174, 1180
BspPI GGATC 4 cut(s) 359, 1208, 1547, 1690
BspQI GCTCTTC 1 cut(s) 1275
BsrBI CCGCTC 1 cut(s) 143
BsrGI TGTACA 2 cut(s) 350, 511
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 6 cut(s) 201, 265, 301, 1132, 1299, 1715
BssMI GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
BssT1I CCWWGG 5 cut(s) 265, 301, 1132, 1299, 1715
Bst2UI CCWGG 3 cut(s) 69, 435, 478
Bst4CI ACNGT 9 cut(s) 23, 616, 806, 1462, 1484, 1648, 1705, 1738, 1846
Bst6I CTCTTC 5 cut(s) 108, 725, 1275, 1300, 1741
BstAUI TGTACA 2 cut(s) 350, 511
BstBAI YACGTR 1 cut(s) 815
BstC8I GCNNGC 4 cut(s) 117, 483, 535, 1666
BstDEI CTNAG 2 cut(s) 15, 1686
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 8 cut(s) 181, 422, 472, 693, 1379, 1612, 1771, 1810
BstFNI CGCG 2 cut(s) 35, 203
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 7 cut(s) 33, 367, 883, 1216, 1555, 1685, 1755
BstMAI GTCTC 1 cut(s) 1413
BstMBI GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
BstMCI CGRYCG 2 cut(s) 33, 934
BstMWI GCNNNNNNNGC 6 cut(s) 83, 200, 329, 482, 1178, 1282
BstNI CCWGG 3 cut(s) 69, 435, 478
BstPAI GACNNNNGTC 1 cut(s) 930
BstSCI CCNGG 5 cut(s) 67, 171, 433, 476, 1076
BstSFI CTRYAG 3 cut(s) 1170, 1176, 1779
BstUI CGCG 2 cut(s) 35, 203
BstV1I GCAGC 4 cut(s) 1162, 1184, 1190, 1336
BstX2I RGATCY 4 cut(s) 880, 1213, 1552, 1682
BstYI RGATCY 4 cut(s) 880, 1213, 1552, 1682
BsuI GTATCC 2 cut(s) 804, 1449
BsuRI GGCC 9 cut(s) 67, 72, 91, 318, 410, 577, 875, 1639, 1668
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 8 cut(s) 181, 422, 472, 693, 1379, 1612, 1771, 1810
BtsIMutI CAGTG 5 cut(s) 219, 496, 612, 1480, 1710
Cac8I GCNNGC 4 cut(s) 117, 483, 535, 1666
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 3 cut(s) 588, 601, 1536
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 8 cut(s) 65, 71, 90, 294, 305, 575, 874, 1667
Cfr42I CCGCGG 1 cut(s) 204
Csp6I GTAC 4 cut(s) 351, 512, 907, 1569
CviAII CATG 8 cut(s) 148, 188, 412, 589, 602, 1429, 1537, 1631
CviQI GTAC 4 cut(s) 351, 512, 907, 1569
DdeI CTNAG 2 cut(s) 15, 1686
DpnI GATC 7 cut(s) 32, 366, 882, 1215, 1554, 1684, 1754
DpnII GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 5 cut(s) 108, 725, 1275, 1300, 1741
EarI CTCTTC 5 cut(s) 108, 725, 1275, 1300, 1741
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 5 cut(s) 265, 301, 1132, 1299, 1715
Eco147I AGGCCT 2 cut(s) 318, 1639
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 294, 305
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 3 cut(s) 89, 729, 1308
Eco88I CYCGRG 2 cut(s) 81, 866
EcoICRI GAGCTC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 67, 433, 476
EcoT14I CCWWGG 5 cut(s) 265, 301, 1132, 1299, 1715
EcoT22I ATGCAT 1 cut(s) 1407
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 5 cut(s) 265, 301, 1132, 1299, 1715
FaeI CATG 8 cut(s) 151, 191, 415, 592, 605, 1432, 1540, 1634
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 554, 586
FaqI GGGAC 3 cut(s) 280, 291, 1832
FatI CATG 8 cut(s) 147, 187, 411, 588, 601, 1428, 1536, 1630
FauI CCCGC 1 cut(s) 667
FbaI TGATCA 1 cut(s) 1752
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 6 cut(s) 36, 204, 1173, 1176, 1179, 1350
FokI GGATG 8 cut(s) 188, 409, 479, 700, 1366, 1619, 1778, 1817
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 6 cut(s) 36, 204, 1173, 1176, 1179, 1350
FspBI CTAG 2 cut(s) 320, 1085
GlaI GCGC 1 cut(s) 98
GluI GCNGC 6 cut(s) 36, 204, 1173, 1176, 1179, 1350
GsaI CCCAGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 9 cut(s) 67, 72, 91, 318, 410, 577, 875, 1639, 1668
HapII CCGG 2 cut(s) 172, 1078
HhaI GCGC 1 cut(s) 99
Hin1II CATG 8 cut(s) 151, 191, 415, 592, 605, 1432, 1540, 1634
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 9 cut(s) 128, 415, 655, 699, 715, 860, 1081, 1251, 1521
HpaII CCGG 2 cut(s) 172, 1078
HphI GGTGA 3 cut(s) 789, 1148, 1690
Hpy166II GTNNAC 6 cut(s) 394, 454, 514, 779, 1054, 1625
Hpy188I TCNGA 6 cut(s) 18, 1213, 1269, 1357, 1488, 1745
Hpy188III TCNNGA 8 cut(s) 589, 602, 866, 1240, 1375, 1388, 1442, 1537
Hpy8I GTNNAC 6 cut(s) 394, 454, 514, 779, 1054, 1625
Hpy99I CGWCG 1 cut(s) 849
HpyAV CCTTC 5 cut(s) 308, 628, 1246, 1394, 1587
HpyCH4III ACNGT 9 cut(s) 23, 616, 806, 1462, 1484, 1648, 1705, 1738, 1846
HpyCH4IV ACGT 2 cut(s) 794, 814
HpyCH4V TGCA 9 cut(s) 169, 527, 738, 992, 1172, 1178, 1295, 1352, 1405
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 200, 329, 482, 1178, 1282
HpyF3I CTNAG 2 cut(s) 15, 1686
HpySE526I ACGT 2 cut(s) 794, 814
Hsp92II CATG 8 cut(s) 151, 191, 415, 592, 605, 1432, 1540, 1634
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 1752
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
LguI GCTCTTC 1 cut(s) 1275
LmnI GCTCC 4 cut(s) 10, 52, 82, 982
Lsp1109I GCAGC 4 cut(s) 1162, 1184, 1190, 1336
LweI GCATC 3 cut(s) 514, 1282, 1361
MaeI CTAG 2 cut(s) 320, 1085
MaeII ACGT 2 cut(s) 794, 814
MaeIII GTNAC 9 cut(s) 23, 181, 707, 790, 795, 893, 1136, 1372, 1840
MalI GATC 7 cut(s) 32, 366, 882, 1215, 1554, 1684, 1754
MbiI CCGCTC 1 cut(s) 143
MboI GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
MflI RGATCY 4 cut(s) 880, 1213, 1552, 1682
MhlI GDGCHC 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 410
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 2 cut(s) 122, 1530
MmeI TCCRAC 2 cut(s) 1052, 1466
Mox20I TGGCCA 1 cut(s) 410
Mph1103I ATGCAT 1 cut(s) 1407
MroXI GAANNNNTTC 1 cut(s) 719
MscI TGGCCA 1 cut(s) 410
MseI TTAA 2 cut(s) 551, 1858
MslI CAYNNNNRTG 5 cut(s) 174, 606, 1427, 1703, 1821
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 4 cut(s) 203, 626, 913, 1175
MspI CCGG 2 cut(s) 172, 1078
MspR9I CCNGG 5 cut(s) 69, 173, 435, 478, 1078
Mva1269I GAATGC 2 cut(s) 994, 1454
MvaI CCWGG 3 cut(s) 69, 435, 478
MvnI CGCG 2 cut(s) 35, 203
MwoI GCNNNNNNNGC 6 cut(s) 83, 200, 329, 482, 1178, 1282
NciI CCSGG 2 cut(s) 173, 1078
NdeII GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
NlaIII CATG 8 cut(s) 151, 191, 415, 592, 605, 1432, 1540, 1634
NlaIV GGNNCC 5 cut(s) 12, 54, 296, 307, 576
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 5 cut(s) 707, 795, 893, 1136, 1372
NsiI ATGCAT 1 cut(s) 1407
OliI CACNNNNGTG 1 cut(s) 1703
PaeR7I CTCGAG 2 cut(s) 81, 866
PagI TCATGA 3 cut(s) 588, 601, 1536
PceI AGGCCT 2 cut(s) 318, 1639
PciSI GCTCTTC 1 cut(s) 1275
PctI GAATGC 2 cut(s) 994, 1454
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 7 cut(s) 415, 655, 699, 715, 860, 1081, 1251
PflFI GACNNNGTC 1 cut(s) 614
PkrI GCNGC 6 cut(s) 37, 205, 1174, 1177, 1180, 1351
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 2 cut(s) 122, 1529
PpsI GAGTC 2 cut(s) 122, 1529
Ppu21I YACGTR 1 cut(s) 815
PpuMI RGGWCCY 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 3 cut(s) 67, 433, 476
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 3 cut(s) 67, 433, 476
PspN4I GGNNCC 5 cut(s) 12, 54, 296, 307, 576
PspPI GGNCC 8 cut(s) 65, 71, 90, 294, 305, 575, 874, 1667
PspPPI RGGWCCY 1 cut(s) 294
PspXI VCTCGAGB 1 cut(s) 81
PstI CTGCAG 2 cut(s) 1174, 1180
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 4 cut(s) 880, 1213, 1552, 1682
PsyI GACNNNGTC 1 cut(s) 614
PvuI CGATCG 1 cut(s) 33
PvuII CAGCTG 3 cut(s) 626, 913, 1175
RsaI GTAC 4 cut(s) 352, 513, 908, 1570
RsaNI GTAC 4 cut(s) 351, 512, 907, 1569
RseI CAYNNNNRTG 5 cut(s) 174, 606, 1427, 1703, 1821
SacI GAGCTC 1 cut(s) 88
SacII CCGCGG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 1275
SaqAI TTAA 2 cut(s) 551, 1858
SatI GCNGC 6 cut(s) 36, 204, 1173, 1176, 1179, 1350
Sau3AI GATC 7 cut(s) 30, 364, 880, 1213, 1552, 1682, 1752
Sau96I GGNCC 8 cut(s) 65, 71, 90, 294, 305, 575, 874, 1667
SchI GAGTC 2 cut(s) 122, 1530
ScrFI CCNGG 5 cut(s) 69, 173, 435, 478, 1078
SduI GDGCHC 1 cut(s) 88
SfaNI GCATC 3 cut(s) 514, 1282, 1361
SfcI CTRYAG 3 cut(s) 1170, 1176, 1779
Sfr274I CTCGAG 2 cut(s) 81, 866
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SinI GGWCC 2 cut(s) 294, 305
SlaI CTCGAG 2 cut(s) 81, 866
SmiMI CAYNNNNRTG 5 cut(s) 174, 606, 1427, 1703, 1821
SmlI CTYRAG 3 cut(s) 81, 668, 866
SmoI CTYRAG 3 cut(s) 81, 668, 866
SseBI AGGCCT 2 cut(s) 318, 1639
SsiI CCGC 6 cut(s) 35, 38, 141, 201, 203, 660
SspMI CTAG 2 cut(s) 320, 1085
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 2 cut(s) 318, 1639
StyD4I CCNGG 5 cut(s) 67, 171, 433, 476, 1076
StyI CCWWGG 5 cut(s) 265, 301, 1132, 1299, 1715
TaaI ACNGT 9 cut(s) 23, 616, 806, 1462, 1484, 1648, 1705, 1738, 1846
TaiI ACGT 2 cut(s) 797, 817
TaqI TCGA 7 cut(s) 82, 111, 126, 723, 867, 934, 1519
TaqII GACCGA 1 cut(s) 920
TatI WGTACW 2 cut(s) 350, 511
TauI GCSGC 2 cut(s) 38, 206
TfiI GAWTC 7 cut(s) 415, 655, 699, 715, 860, 1081, 1251
Tru1I TTAA 2 cut(s) 551, 1858
Tru9I TTAA 2 cut(s) 551, 1858
TscAI CASTG 5 cut(s) 226, 496, 619, 1487, 1710
TseFI GTSAC 5 cut(s) 707, 795, 893, 1136, 1372
TseI GCWGC 4 cut(s) 1172, 1175, 1178, 1349
Tsp45I GTSAC 5 cut(s) 707, 795, 893, 1136, 1372
TspRI CASTG 5 cut(s) 226, 496, 619, 1487, 1710
Tth111I GACNNNGTC 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 294, 305
XapI RAATTY 7 cut(s) 209, 275, 692, 1012, 1164, 1610, 1830
XhoI CTCGAG 2 cut(s) 81, 866
XmiI GTMKAC 1 cut(s) 453
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 2 cut(s) 320, 1085
Zsp2I ATGCAT 1 cut(s) 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.