Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009586

Physical Location & Seq

Genomic Coordinates Reverse (-)

38488876 .. 38497348

Gene Structure 8473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG299000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGGAGGAGCCTCAGAACGGTAACGCGATCGCAGCGGAGAGTGAGGAGGAGCCGATAGTCGGGCCTGGCCCAGCCCCTCGAGCTCTGCCTAAGCGCCCTCTTCAGTTCGAGCAGGCTTACCTCGACTCCCTCCCCTCCGCTCTCATGACATTTGAAGTTTTGGAAGAAAAAGCCCATCGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase WD40

Protein Analysis

62

Amino Acids

6.87

Weight (kDa)

4.57

Isoelectric Point (pI)

81.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44600
fragaria_vesca	FvH4_3g24280 FvH4_3g24280 FvH4_3g24280
malus_domestica	MD03G1138000.v1.1 MD11G1160100.v1.1
prunus_persica	Prupe.6G123000_v2.0.a1 Prupe.6G123000_v2.0.a1
pyrus_communis	pycom03g09370 pycom11g13090
rosa_chinensis	RchiOBHm_Chr5g0043591
rosa_laevigata	RLG00000034204
rosa_multiflora	Rmu_sc0005316.1_g000013 Rmu_sc0022835.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037390
rosa_rugosa	Rorug05G0206900
rosa_samantha	Rh5AG291800 Rh5BG299000 Rh5BG299200 Rh5CG328000 Rh5DG308100
rosa_wichuraiana	Rw5G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	38, 141
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	20, 62
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	65, 70
ApeKI	GCWGC	1 cut(s)	35
AsiSI	GCGATCGC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	65, 71
AvaI	CYCGRG	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	65, 71
BmiI	GGNNCC	2 cut(s)	12, 54
BmrFI	CCNGG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 62
BseBI	CCWGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	20, 62
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	4 cut(s)	20, 23, 62, 65
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	67, 72
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	20, 62
BsnI	GGCC	2 cut(s)	67, 72
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	38, 141
BspANI	GGCC	2 cut(s)	67, 72
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	12, 54
BsrBI	CCGCTC	1 cut(s)	143
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	15, 93
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 83
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	67, 72
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	65, 71
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	8 cut(s)	13, 55, 67, 72, 77, 86, 119, 176
CviKI_1	RGCY	8 cut(s)	13, 55, 67, 72, 77, 86, 119, 176
DdeI	CTNAG	2 cut(s)	15, 93
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	36
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	67, 72
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 83
HpyF3I	CTNAG	2 cut(s)	15, 93
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	10, 52
LpnPI	CCDG	4 cut(s)	54, 81, 87, 101
Lsp1109I	GCAGC	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	95, 179
MhlI	GDGCHC	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	8 cut(s)	24, 40, 43, 90, 111, 134, 143, 148
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	35, 83
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	12, 54
PaeR7I	CTCGAG	1 cut(s)	81
PagI	TCATGA	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	33
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	12, 54
PspPI	GGNCC	2 cut(s)	65, 71
PspXI	VCTCGAGB	1 cut(s)	81
PvuI	CGATCG	1 cut(s)	33
RgaI	GCGATCGC	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	65, 71
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	2 cut(s)	88, 126
SfaAI	GCGATCGC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	81
SgfI	GCGATCGC	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
SsiI	CCGC	2 cut(s)	38, 141
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	3 cut(s)	82, 111, 126
TseI	GCWGC	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.