RLG00000034204

Peptidylprolyl isomerase domain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009586
Physical Location & Seq
Reverse (-)
38356703 .. 38367601
10899 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034204

Sequence Viewer

Length: 1257 bp
ATGGAGGAGGAACCTCAGAACGAGTTATATGCACTGAGACGTGGTTACTCTGTTGCTGTGTCGGCGGTCGAATTTGCCATCACTGGAAGTGTTGATGGACATTTGAAGTTTTGGAAGAAAAAGCCCATCGGCATTGAATTTGCGAAGCATTTTAGGTCGCACCTTGGTCCCATTGAAGGCCTAGCTGTTAGTGCTGATGGTTTGCTTTGCTGTACAATTTCAAATGATCCCTCTGTGAAGTTATATGATGTTGTCAACTATGATATGATGGCCATGATTCACACATCCTTTGTTCCTGGTGCTGTCGAGTGGATGTCAAAGCCAGGCTTGCCATCAGTGATAGAAACTCATCATCCGCGGCCCAAGATCTCCAAAGAAGTGACGTACCAGCTGGAAGCTATTGACTTCGGTCGAAGAATGGCTGTTGAGAAAGAAATAGAGAAAACAGAAACTGCCCCACAGCCGAATGCAGTTTTTGATGAAAGCTCAAATTTTCTTATGTATCCAACTCTGCTTGGGATAAAAGTGGTAAACCTACACACTAATCTTTTTGGCCGGATTCTAGGAAAAGTGGAAAACAATGATAGGTTTTTGAGAATTGCCTTATACCAAGGTGACAGAAGCAGTAAAAAAGTTAGAAAAATTCCTGCAGATGCGGCAAATGTGAATGAGAGCAAAGATCCTCTGTCGGATCCCACTCTCATATGTTGTGCCTTGAAGAAACACAGAATGTATCTATTCAGAGAGAGCCAGAAGAGCCTGAAGATGCAAACCAAGGGAAGAGATGTGTTCAATGAGAAGCCTCCTATTGATGAACTCTTGGCTGCATCTGATATAGGCAAATCAGTCACGACATCCCTTCGTGACAATGTGATTATGCATACTACAATGGGAGACATACACATGAAGTTGTATCCAGAGGAATGCCCGAAAACTGTGGAGAACTTCACAATGCACTGTCGGAATGGCTATTTTGATAACCTCATATTTTATCGAGTCATCAAAGGTTTCATGATACAAACAGGAGATCCTTTAGGAGATGGTACTGGTGGGCAATCTATTTGGGGAAGGGAGTTTGAGGATGAATTTCACAGAAGTTTACGACATGATAGGCCTTTTACTGTATCAATGGCAAATGCTGGGCGAAATACAAATGGATCTCAGTTCTTTATCACCACAGTGGCTACTCCTTGGCTGGACAGCAAGCACACAGTTTTTGGAAGAGTGATCAATGGAATGGATGTGGTTCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase WD40

Protein Analysis

419

Amino Acids

47.14

Weight (kDa)

7.23

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 291 - 417 2.5e-46 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 358
AciI CCGC 4 cut(s) 65, 356, 358, 656
AclWI GGATC 6 cut(s) 221, 674, 686, 699, 1022, 1165
AcoI YGGCCR 2 cut(s) 270, 553
AcsI RAATTY 5 cut(s) 71, 137, 490, 642, 1085
AcuI CTGAAG 1 cut(s) 782
AfaI GTAC 3 cut(s) 214, 386, 1045
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 6 cut(s) 106, 137, 176, 222, 718, 793
AjiI CACGTC 1 cut(s) 41
AjnI CCWGG 2 cut(s) 295, 322
AleI CACNNNNGTG 1 cut(s) 1178
AluBI AGCT 4 cut(s) 185, 391, 398, 486
AluI AGCT 4 cut(s) 185, 391, 398, 486
Alw26I GTCTC 2 cut(s) 31, 888
AlwI GGATC 6 cut(s) 221, 674, 686, 699, 1022, 1165
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 5 cut(s) 178, 270, 359, 553, 1112
ApeKI GCWGC 1 cut(s) 824
ApoI RAATTY 5 cut(s) 71, 137, 490, 642, 1085
AspS9I GGNCC 2 cut(s) 167, 360
AsuHPI GGTGA 2 cut(s) 626, 1165
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 691
BbvI GCAGC 1 cut(s) 811
BccI CCATC 7 cut(s) 86, 89, 134, 191, 262, 340, 1034
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 297, 324
BciVI GTATCC 2 cut(s) 513, 924
BclI TGATCA 1 cut(s) 1227
BcoDI GTCTC 2 cut(s) 31, 888
BfaI CTAG 2 cut(s) 182, 563
BfmI CTRYAG 1 cut(s) 648
BfuI GTATCC 2 cut(s) 513, 924
BglII AGATCT 1 cut(s) 366
BisI GCNGC 3 cut(s) 359, 657, 825
BlsI GCNGC 3 cut(s) 360, 658, 826
Bme1390I CCNGG 2 cut(s) 297, 324
Bme18I GGWCC 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 167, 360
BmiI GGNNCC 3 cut(s) 12, 169, 693
BmrFI CCNGG 2 cut(s) 297, 324
BmsI GCATC 3 cut(s) 643, 756, 836
BoxI GACNNNNGTC 1 cut(s) 408
BsaJI CCNNGG 5 cut(s) 163, 356, 610, 774, 1190
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 88, 1051
BseBI CCWGG 2 cut(s) 297, 324
BseDI CCNNGG 5 cut(s) 163, 356, 610, 774, 1190
BseGI GGATG 6 cut(s) 284, 318, 352, 854, 1087, 1246
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 3 cut(s) 26, 29, 1175
BseNI ACTGG 2 cut(s) 88, 1051
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 811
BseYI CCCAGC 1 cut(s) 1139
Bsh1236I CGCG 1 cut(s) 358
Bsh1285I CGRYCG 2 cut(s) 69, 412
BshFI GGCC 5 cut(s) 180, 272, 361, 555, 1114
BsiEI CGRYCG 2 cut(s) 69, 412
BsiSI CCGG 1 cut(s) 556
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 31, 888
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 2 cut(s) 472, 929
BsnI GGCC 5 cut(s) 180, 272, 361, 555, 1114
Bsp1407I TGTACA 1 cut(s) 212
Bsp143I GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
BspACI CCGC 4 cut(s) 65, 356, 358, 656
BspANI GGCC 5 cut(s) 180, 272, 361, 555, 1114
BspCNI CTCAG 3 cut(s) 27, 28, 1174
BspFNI CGCG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 3 cut(s) 12, 169, 693
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 6 cut(s) 221, 674, 686, 699, 1022, 1165
BspQI GCTCTTC 1 cut(s) 749
BsrGI TGTACA 1 cut(s) 212
BsrI ACTGG 2 cut(s) 88, 1051
BssECI CCNNGG 5 cut(s) 163, 356, 610, 774, 1190
BssMI GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
BssT1I CCWWGG 4 cut(s) 163, 610, 774, 1190
Bst2UI CCWGG 2 cut(s) 297, 324
Bst4CI ACNGT 5 cut(s) 937, 959, 1123, 1180, 1213
Bst6I CTCTTC 3 cut(s) 749, 775, 1216
BstAUI TGTACA 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 329, 1205
BstDEI CTNAG 3 cut(s) 15, 35, 1161
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 6 cut(s) 284, 318, 352, 854, 1087, 1246
BstFNI CGCG 1 cut(s) 358
BstKTI GATC 7 cut(s) 229, 369, 682, 694, 1030, 1160, 1230
BstMAI GTCTC 2 cut(s) 31, 888
BstMBI GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
BstMCI CGRYCG 2 cut(s) 69, 412
BstMWI GCNNNNNNNGC 5 cut(s) 62, 191, 328, 656, 756
BstNI CCWGG 2 cut(s) 297, 324
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 295, 322
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 811
BstX2I RGATCY 5 cut(s) 366, 679, 691, 1027, 1157
BstYI RGATCY 5 cut(s) 366, 679, 691, 1027, 1157
BsuI GTATCC 2 cut(s) 513, 924
BsuRI GGCC 5 cut(s) 180, 272, 361, 555, 1114
BtgI CCRYGG 1 cut(s) 356
BtrI CACGTC 1 cut(s) 41
BtsCI GGATG 6 cut(s) 284, 318, 352, 854, 1087, 1246
BtsIMutI CAGTG 5 cut(s) 32, 81, 342, 955, 1185
Cac8I GCNNGC 2 cut(s) 329, 1205
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 1011
Cfr13I GGNCC 2 cut(s) 167, 360
Cfr42I CCGCGG 1 cut(s) 359
Csp6I GTAC 3 cut(s) 213, 385, 1044
CviAII CATG 4 cut(s) 274, 904, 1012, 1106
CviQI GTAC 3 cut(s) 213, 385, 1044
DdeI CTNAG 3 cut(s) 15, 35, 1161
DpnI GATC 7 cut(s) 228, 368, 681, 693, 1029, 1159, 1229
DpnII GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
EaeI YGGCCR 2 cut(s) 270, 553
Eam1104I CTCTTC 3 cut(s) 749, 775, 1216
EarI CTCTTC 3 cut(s) 749, 775, 1216
Eco130I CCWWGG 4 cut(s) 163, 610, 774, 1190
Eco147I AGGCCT 2 cut(s) 180, 1114
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 782
EcoRII CCWGG 2 cut(s) 295, 322
EcoT14I CCWWGG 4 cut(s) 163, 610, 774, 1190
EcoT22I ATGCAT 1 cut(s) 882
ErhI CCWWGG 4 cut(s) 163, 610, 774, 1190
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 4 cut(s) 277, 907, 1015, 1109
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 153
FatI CATG 4 cut(s) 273, 903, 1011, 1105
FauNDI CATATG 1 cut(s) 704
FbaI TGATCA 1 cut(s) 1227
Fnu4HI GCNGC 3 cut(s) 359, 657, 825
FokI GGATG 6 cut(s) 271, 325, 339, 841, 1094, 1253
Fsp4HI GCNGC 3 cut(s) 359, 657, 825
FspBI CTAG 2 cut(s) 182, 563
GluI GCNGC 3 cut(s) 359, 657, 825
GsaI CCCAGC 1 cut(s) 1143
HaeIII GGCC 5 cut(s) 180, 272, 361, 555, 1114
HapII CCGG 1 cut(s) 556
Hin1II CATG 4 cut(s) 277, 907, 1015, 1109
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 277, 559, 996
HpaII CCGG 1 cut(s) 556
HphI GGTGA 2 cut(s) 626, 1165
Hpy166II GTNNAC 3 cut(s) 256, 532, 1100
Hpy188I TCNGA 5 cut(s) 18, 691, 743, 832, 963
Hpy188III TCNNGA 4 cut(s) 850, 863, 917, 1012
Hpy8I GTNNAC 3 cut(s) 256, 532, 1100
HpyAV CCTTC 3 cut(s) 170, 869, 1062
HpyCH4III ACNGT 5 cut(s) 937, 959, 1123, 1180, 1213
HpyCH4IV ACGT 2 cut(s) 40, 383
HpyCH4V TGCA 7 cut(s) 32, 470, 650, 769, 827, 880, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 191, 328, 656, 756
HpyF3I CTNAG 3 cut(s) 15, 35, 1161
HpySE526I ACGT 2 cut(s) 40, 383
Hsp92II CATG 4 cut(s) 277, 907, 1015, 1109
Ksp22I TGATCA 1 cut(s) 1227
KspI CCGCGG 1 cut(s) 359
Kzo9I GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
LguI GCTCTTC 1 cut(s) 749
Lsp1109I GCAGC 1 cut(s) 811
LweI GCATC 3 cut(s) 643, 756, 836
MaeI CTAG 2 cut(s) 182, 563
MaeII ACGT 2 cut(s) 40, 383
MaeIII GTNAC 5 cut(s) 44, 379, 614, 847, 863
MalI GATC 7 cut(s) 228, 368, 681, 693, 1029, 1159, 1229
MboI GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
MboII GAAGA 7 cut(s) 127, 426, 730, 766, 775, 792, 1233
MflI RGATCY 5 cut(s) 366, 679, 691, 1027, 1157
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 7 cut(s) 71, 137, 216, 490, 597, 642, 1085
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 1005
MmeI TCCRAC 3 cut(s) 530, 669, 941
MnlI CCTC 7 cut(s) 24, 241, 693, 813, 913, 992, 1072
Mox20I TGGCCA 1 cut(s) 272
Mph1103I ATGCAT 1 cut(s) 882
MscI TGGCCA 1 cut(s) 272
MslI CAYNNNNRTG 2 cut(s) 902, 1178
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 358, 391
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 2 cut(s) 297, 324
Mva1269I GAATGC 2 cut(s) 472, 929
MvaI CCWGG 2 cut(s) 297, 324
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 5 cut(s) 62, 191, 328, 656, 756
NdeI CATATG 1 cut(s) 704
NdeII GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
NlaIII CATG 4 cut(s) 277, 907, 1015, 1109
NlaIV GGNNCC 3 cut(s) 12, 169, 693
NmuCI GTSAC 4 cut(s) 379, 614, 847, 863
NsiI ATGCAT 1 cut(s) 882
OliI CACNNNNGTG 1 cut(s) 1178
PagI TCATGA 1 cut(s) 1011
PceI AGGCCT 2 cut(s) 180, 1114
PciSI GCTCTTC 1 cut(s) 749
PctI GAATGC 2 cut(s) 472, 929
PfeI GAWTC 2 cut(s) 277, 559
PkrI GCNGC 3 cut(s) 360, 658, 826
PleI GAGTC 1 cut(s) 1004
PpsI GAGTC 1 cut(s) 1004
PshAI GACNNNNGTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 295, 322
PspFI CCCAGC 1 cut(s) 1139
PspGI CCWGG 2 cut(s) 295, 322
PspN4I GGNNCC 3 cut(s) 12, 169, 693
PspPI GGNCC 2 cut(s) 167, 360
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 5 cut(s) 366, 679, 691, 1027, 1157
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 3 cut(s) 214, 386, 1045
RsaNI GTAC 3 cut(s) 213, 385, 1044
RseI CAYNNNNRTG 2 cut(s) 902, 1178
SacII CCGCGG 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 749
SatI GCNGC 3 cut(s) 359, 657, 825
Sau3AI GATC 7 cut(s) 226, 366, 679, 691, 1027, 1157, 1227
Sau96I GGNCC 2 cut(s) 167, 360
SchI GAGTC 1 cut(s) 1005
ScrFI CCNGG 2 cut(s) 297, 324
SfaNI GCATC 3 cut(s) 643, 756, 836
SfcI CTRYAG 1 cut(s) 648
Sfr303I CCGCGG 1 cut(s) 359
SgrBI CCGCGG 1 cut(s) 359
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 902, 1178
Sse9I AATT 7 cut(s) 71, 137, 216, 490, 597, 642, 1085
SseBI AGGCCT 2 cut(s) 180, 1114
SsiI CCGC 4 cut(s) 65, 356, 358, 656
SspMI CTAG 2 cut(s) 182, 563
StuI AGGCCT 2 cut(s) 180, 1114
StyD4I CCNGG 2 cut(s) 295, 322
StyI CCWWGG 4 cut(s) 163, 610, 774, 1190
TaaI ACNGT 5 cut(s) 937, 959, 1123, 1180, 1213
TaiI ACGT 2 cut(s) 43, 386
TaqI TCGA 4 cut(s) 69, 306, 412, 994
TaqII GACCGA 1 cut(s) 398
TasI AATT 7 cut(s) 71, 137, 216, 490, 597, 642, 1085
TatI WGTACW 1 cut(s) 212
TauI GCSGC 2 cut(s) 361, 659
TfiI GAWTC 2 cut(s) 277, 559
TscAI CASTG 5 cut(s) 39, 88, 342, 962, 1185
TseFI GTSAC 4 cut(s) 379, 614, 847, 863
TseI GCWGC 1 cut(s) 824
Tsp45I GTSAC 4 cut(s) 379, 614, 847, 863
TspDTI ATGAA 5 cut(s) 495, 828, 920, 1000, 1098
TspRI CASTG 5 cut(s) 39, 88, 342, 962, 1185
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 5 cut(s) 71, 137, 490, 642, 1085
XspI CTAG 2 cut(s) 182, 563
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.