Peptidylprolyl isomerase domain and WD repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44600 |
| fragaria_vesca | FvH4_3g24280 FvH4_3g24280 FvH4_3g24280 |
| malus_domestica | MD03G1138000.v1.1 MD11G1160100.v1.1 |
| prunus_persica | Prupe.6G123000_v2.0.a1 Prupe.6G123000_v2.0.a1 |
| pyrus_communis | pycom03g09370 pycom11g13090 |
| rosa_chinensis | RchiOBHm_Chr5g0043591 |
| rosa_laevigata | RLG00000034204 |
| rosa_multiflora | Rmu_sc0005316.1_g000013 Rmu_sc0022835.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00037390 |
| rosa_rugosa | Rorug05G0206900 |
| rosa_samantha | Rh5AG291800 Rh5BG299000 Rh5BG299200 Rh5CG328000 Rh5DG308100 |
| rosa_wichuraiana | Rw5G027090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 179 |
| AccI | GTMKAC | 1 cut(s) | 489 |
| AccIII | TCCGGA | 1 cut(s) | 712 |
| AciI | CCGC | 4 cut(s) | 68, 133, 177, 242 |
| AclWI | GGATC | 3 cut(s) | 1251, 1588, 1597 |
| AcsI | RAATTY | 4 cut(s) | 1048, 1090, 1116, 1200 |
| AcuI | CTGAAG | 1 cut(s) | 1347 |
| AfaI | GTAC | 7 cut(s) | 188, 388, 549, 574, 603, 944, 1447 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 17, 59, 92, 350, 719 |
| AflII | CTTAAG | 1 cut(s) | 704 |
| AflIII | ACRYGT | 1 cut(s) | 850 |
| AgsI | TTSAA | 7 cut(s) | 280, 350, 396, 683, 761, 1283, 1357 |
| AjnI | CCWGG | 2 cut(s) | 469, 512 |
| AluBI | AGCT | 6 cut(s) | 359, 662, 949, 956, 1044, 1412 |
| AluI | AGCT | 6 cut(s) | 359, 662, 949, 956, 1044, 1412 |
| Alw21I | GWGCWC | 1 cut(s) | 153 |
| Alw26I | GTCTC | 3 cut(s) | 65, 710, 1425 |
| AlwI | GGATC | 3 cut(s) | 1251, 1588, 1597 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1010 |
| Ama87I | CYCGRG | 1 cut(s) | 902 |
| Aor13HI | TCCGGA | 1 cut(s) | 712 |
| AoxI | GGCC | 5 cut(s) | 100, 134, 352, 610, 909 |
| ApaI | GGGCCC | 1 cut(s) | 614 |
| ApeKI | GCWGC | 4 cut(s) | 1208, 1211, 1214, 1388 |
| ApoI | RAATTY | 4 cut(s) | 1048, 1090, 1116, 1200 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 389, 421 |
| AspS9I | GGNCC | 8 cut(s) | 95, 101, 135, 330, 341, 610, 611, 910 |
| AsuC2I | CCSGG | 2 cut(s) | 99, 806 |
| AsuHPI | GGTGA | 3 cut(s) | 736, 1184, 1469 |
| AvaI | CYCGRG | 1 cut(s) | 902 |
| AvaII | GGWCC | 3 cut(s) | 95, 330, 341 |
| BaeGI | GKGCMC | 1 cut(s) | 614 |
| BanII | GRGCYC | 2 cut(s) | 87, 614 |
| Bbv12I | GWGCWC | 1 cut(s) | 153 |
| BbvI | GCAGC | 4 cut(s) | 1195, 1198, 1226, 1375 |
| BccI | CCATC | 5 cut(s) | 263, 365, 436, 530, 803 |
| BceAI | ACGGC | 1 cut(s) | 76 |
| BciT130I | CCWGG | 2 cut(s) | 471, 514 |
| BciVI | GTATCC | 2 cut(s) | 840, 1488 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcnI | CCSGG | 2 cut(s) | 99, 806 |
| BcoDI | GTCTC | 3 cut(s) | 65, 710, 1425 |
| BfaI | CTAG | 2 cut(s) | 32, 356 |
| BfmI | CTRYAG | 1 cut(s) | 1212 |
| BfrI | CTTAAG | 1 cut(s) | 704 |
| BfuI | GTATCC | 2 cut(s) | 840, 1488 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1530 |
| BglII | AGATCT | 1 cut(s) | 916 |
| BisI | GCNGC | 5 cut(s) | 134, 1209, 1212, 1215, 1389 |
| BlsI | GCNGC | 5 cut(s) | 135, 1210, 1213, 1216, 1390 |
| Bme1390I | CCNGG | 4 cut(s) | 99, 471, 514, 806 |
| Bme18I | GGWCC | 3 cut(s) | 95, 330, 341 |
| BmeT110I | CYCGRG | 1 cut(s) | 902 |
| BmgT120I | GGNCC | 8 cut(s) | 95, 101, 135, 330, 341, 610, 611, 910 |
| BmiI | GGNNCC | 7 cut(s) | 9, 84, 96, 97, 137, 332, 612 |
| BmrFI | CCNGG | 4 cut(s) | 99, 471, 514, 806 |
| BmrI | ACTGGG | 2 cut(s) | 608, 729 |
| BmsI | GCATC | 4 cut(s) | 154, 550, 1321, 1400 |
| BmuI | ACTGGG | 2 cut(s) | 608, 729 |
| BpmI | CTGGAG | 3 cut(s) | 125, 577, 905 |
| BpuMI | CCSGG | 2 cut(s) | 99, 806 |
| Bsa29I | ATCGAT | 2 cut(s) | 1255, 1592 |
| BsaAI | YACGTR | 1 cut(s) | 851 |
| BsaBI | GATNNNNATC | 1 cut(s) | 750 |
| BsaI | GGTCTC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 5 cut(s) | 75, 87, 337, 1072, 1168 |
| BsaWI | WCCGGW | 1 cut(s) | 712 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 17, 59, 92, 350, 719 |
| Bse1I | ACTGG | 4 cut(s) | 142, 262, 614, 724 |
| Bse8I | GATNNNNATC | 1 cut(s) | 750 |
| BseAI | TCCGGA | 1 cut(s) | 712 |
| BseBI | CCWGG | 2 cut(s) | 471, 514 |
| BseCI | ATCGAT | 2 cut(s) | 1255, 1592 |
| BseDI | CCNNGG | 5 cut(s) | 75, 87, 337, 1072, 1168 |
| BseGI | GGATG | 2 cut(s) | 508, 814 |
| BseJI | GATNNNNATC | 1 cut(s) | 750 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 17, 59, 92, 350, 719 |
| BseMII | CTCAG | 1 cut(s) | 26 |
| BseNI | ACTGG | 4 cut(s) | 142, 262, 614, 724 |
| BseRI | GAGGAG | 4 cut(s) | 20, 36, 92, 95 |
| BseSI | GKGCMC | 1 cut(s) | 614 |
| BseXI | GCAGC | 4 cut(s) | 1195, 1198, 1226, 1375 |
| BshFI | GGCC | 5 cut(s) | 102, 136, 354, 612, 911 |
| BshVI | ATCGAT | 2 cut(s) | 1255, 1592 |
| BsiHKAI | GWGCWC | 1 cut(s) | 153 |
| BsiHKCI | CYCGRG | 1 cut(s) | 902 |
| BsiSI | CCGG | 3 cut(s) | 99, 713, 806 |
| BslFI | GGGAC | 2 cut(s) | 81, 316 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 17, 59, 92, 350, 719 |
| BsmAI | GTCTC | 3 cut(s) | 65, 710, 1425 |
| BsmBI | CGTCTC | 1 cut(s) | 1425 |
| BsmFI | GGGAC | 2 cut(s) | 81, 316 |
| BsmI | GAATGC | 2 cut(s) | 1030, 1493 |
| BsnI | GGCC | 5 cut(s) | 102, 136, 354, 612, 911 |
| Bso31I | GGTCTC | 1 cut(s) | 65 |
| BsoBI | CYCGRG | 1 cut(s) | 902 |
| Bsp120I | GGGCCC | 1 cut(s) | 610 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 153, 614 |
| Bsp13I | TCCGGA | 1 cut(s) | 712 |
| Bsp1407I | TGTACA | 2 cut(s) | 386, 547 |
| Bsp143I | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| Bsp19I | CCATGG | 1 cut(s) | 87 |
| BspACI | CCGC | 4 cut(s) | 68, 133, 177, 242 |
| BspANI | GGCC | 5 cut(s) | 102, 136, 354, 612, 911 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspDI | ATCGAT | 2 cut(s) | 1255, 1592 |
| BspEI | TCCGGA | 1 cut(s) | 712 |
| BspHI | TCATGA | 2 cut(s) | 447, 1575 |
| BspLI | GGNNCC | 7 cut(s) | 9, 84, 96, 97, 137, 332, 612 |
| BspMAI | CTGCAG | 1 cut(s) | 1216 |
| BspPI | GGATC | 3 cut(s) | 1251, 1588, 1597 |
| BspQI | GCTCTTC | 2 cut(s) | 174, 1314 |
| BspTI | CTTAAG | 1 cut(s) | 704 |
| BspTNI | GGTCTC | 1 cut(s) | 65 |
| BsrBI | CCGCTC | 1 cut(s) | 179 |
| BsrGI | TGTACA | 2 cut(s) | 386, 547 |
| BsrI | ACTGG | 4 cut(s) | 142, 262, 614, 724 |
| BssECI | CCNNGG | 5 cut(s) | 75, 87, 337, 1072, 1168 |
| BssMI | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| BssT1I | CCWWGG | 4 cut(s) | 87, 337, 1072, 1168 |
| Bst2UI | CCWGG | 2 cut(s) | 471, 514 |
| Bst4CI | ACNGT | 5 cut(s) | 209, 567, 652, 784, 1501 |
| Bst6I | CTCTTC | 3 cut(s) | 174, 1314, 1339 |
| BstAFI | CTTAAG | 1 cut(s) | 704 |
| BstAUI | TGTACA | 2 cut(s) | 386, 547 |
| BstBAI | YACGTR | 1 cut(s) | 851 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 519 |
| BstDEI | CTNAG | 2 cut(s) | 12, 1338 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstF5I | GGATG | 2 cut(s) | 508, 814 |
| BstKTI | GATC | 8 cut(s) | 667, 841, 919, 1248, 1255, 1259, 1592, 1596 |
| BstMAI | GTCTC | 3 cut(s) | 65, 710, 1425 |
| BstMBI | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 518, 1214, 1530 |
| BstNI | CCWGG | 2 cut(s) | 471, 514 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstSCI | CCNGG | 4 cut(s) | 97, 469, 512, 804 |
| BstSFI | CTRYAG | 1 cut(s) | 1212 |
| BstSLI | GKGCMC | 1 cut(s) | 614 |
| BstV1I | GCAGC | 4 cut(s) | 1195, 1198, 1226, 1375 |
| BstX2I | RGATCY | 1 cut(s) | 916 |
| BstYI | RGATCY | 1 cut(s) | 916 |
| Bsu15I | ATCGAT | 2 cut(s) | 1255, 1592 |
| BsuI | GTATCC | 2 cut(s) | 840, 1488 |
| BsuRI | GGCC | 5 cut(s) | 102, 136, 354, 612, 911 |
| BsuTUI | ATCGAT | 2 cut(s) | 1255, 1592 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| BtgZI | GCGATG | 1 cut(s) | 816 |
| BtsCI | GGATG | 2 cut(s) | 508, 814 |
| BtsI | GCAGTG | 1 cut(s) | 1519 |
| BtsIMutI | CAGTG | 4 cut(s) | 532, 621, 657, 1519 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 519 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1010 |
| CciI | TCATGA | 2 cut(s) | 447, 1575 |
| Cfr13I | GGNCC | 8 cut(s) | 95, 101, 135, 330, 341, 610, 611, 910 |
| ClaI | ATCGAT | 2 cut(s) | 1255, 1592 |
| Csp6I | GTAC | 7 cut(s) | 187, 387, 548, 573, 602, 943, 1446 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1482, 1517 |
| CviAII | CATG | 5 cut(s) | 88, 224, 448, 1468, 1576 |
| CviQI | GTAC | 7 cut(s) | 187, 387, 548, 573, 602, 943, 1446 |
| DdeI | CTNAG | 2 cut(s) | 12, 1338 |
| DpnI | GATC | 8 cut(s) | 666, 840, 918, 1247, 1254, 1258, 1591, 1595 |
| DpnII | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| Eam1104I | CTCTTC | 3 cut(s) | 174, 1314, 1339 |
| EarI | CTCTTC | 3 cut(s) | 174, 1314, 1339 |
| EciI | GGCGGA | 2 cut(s) | 83, 257 |
| Eco130I | CCWWGG | 4 cut(s) | 87, 337, 1072, 1168 |
| Eco147I | AGGCCT | 1 cut(s) | 354 |
| Eco24I | GRGCYC | 2 cut(s) | 87, 614 |
| Eco31I | GGTCTC | 1 cut(s) | 65 |
| Eco47I | GGWCC | 3 cut(s) | 95, 330, 341 |
| Eco57I | CTGAAG | 1 cut(s) | 1347 |
| Eco88I | CYCGRG | 1 cut(s) | 902 |
| EcoO109I | RGGNCCY | 2 cut(s) | 95, 330 |
| EcoRI | GAATTC | 1 cut(s) | 1116 |
| EcoRII | CCWGG | 2 cut(s) | 469, 512 |
| EcoT14I | CCWWGG | 4 cut(s) | 87, 337, 1072, 1168 |
| EcoT38I | GRGCYC | 2 cut(s) | 87, 614 |
| ErhI | CCWWGG | 4 cut(s) | 87, 337, 1072, 1168 |
| Esp3I | CGTCTC | 1 cut(s) | 1425 |
| FaeI | CATG | 5 cut(s) | 91, 227, 451, 1471, 1579 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 501, 533 |
| FaqI | GGGAC | 2 cut(s) | 81, 316 |
| FatI | CATG | 5 cut(s) | 87, 223, 447, 1467, 1575 |
| FauNDI | CATATG | 2 cut(s) | 544, 1269 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FblI | GTMKAC | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 5 cut(s) | 134, 1209, 1212, 1215, 1389 |
| FokI | GGATG | 2 cut(s) | 515, 821 |
| FriOI | GRGCYC | 2 cut(s) | 87, 614 |
| Fsp4HI | GCNGC | 5 cut(s) | 134, 1209, 1212, 1215, 1389 |
| FspBI | CTAG | 2 cut(s) | 32, 356 |
| GluI | GCNGC | 5 cut(s) | 134, 1209, 1212, 1215, 1389 |
| GsuI | CTGGAG | 3 cut(s) | 125, 577, 905 |
| HaeIII | GGCC | 5 cut(s) | 102, 136, 354, 612, 911 |
| HapII | CCGG | 3 cut(s) | 99, 713, 806 |
| Hin1II | CATG | 5 cut(s) | 91, 227, 451, 1471, 1579 |
| HincII | GTYRAC | 1 cut(s) | 430 |
| HindII | GTYRAC | 1 cut(s) | 430 |
| HinfI | GANTC | 5 cut(s) | 451, 691, 1007, 1294, 1560 |
| HpaII | CCGG | 3 cut(s) | 99, 713, 806 |
| HphI | GGTGA | 3 cut(s) | 736, 1184, 1469 |
| Hpy166II | GTNNAC | 4 cut(s) | 430, 490, 550, 604 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 734, 1124, 1396 |
| Hpy8I | GTNNAC | 4 cut(s) | 430, 490, 550, 604 |
| Hpy99I | CGWCG | 1 cut(s) | 885 |
| HpyAV | CCTTC | 1 cut(s) | 344 |
| HpyCH4III | ACNGT | 5 cut(s) | 209, 567, 652, 784, 1501 |
| HpyCH4IV | ACGT | 5 cut(s) | 42, 213, 423, 850, 1418 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 518, 1214, 1530 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 1338 |
| HpySE526I | ACGT | 5 cut(s) | 42, 213, 423, 850, 1418 |
| Hsp92II | CATG | 5 cut(s) | 91, 227, 451, 1471, 1579 |
| KflI | GGGWCCC | 1 cut(s) | 95 |
| Kpn2I | TCCGGA | 1 cut(s) | 712 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| Kzo9I | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| LguI | GCTCTTC | 2 cut(s) | 174, 1314 |
| LmnI | GCTCC | 2 cut(s) | 7, 82 |
| Lsp1109I | GCAGC | 4 cut(s) | 1195, 1198, 1226, 1375 |
| LweI | GCATC | 4 cut(s) | 154, 550, 1321, 1400 |
| MaeI | CTAG | 2 cut(s) | 32, 356 |
| MaeII | ACGT | 5 cut(s) | 42, 213, 423, 850, 1418 |
| MaeIII | GTNAC | 6 cut(s) | 209, 217, 253, 527, 1172, 1457 |
| MalI | GATC | 8 cut(s) | 666, 840, 918, 1247, 1254, 1258, 1591, 1595 |
| MbiI | CCGCTC | 1 cut(s) | 179 |
| MboI | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| MboII | GAAGA | 9 cut(s) | 161, 301, 424, 780, 984, 1262, 1331, 1340, 1356 |
| MfeI | CAATTG | 1 cut(s) | 345 |
| MflI | RGATCY | 1 cut(s) | 916 |
| MhlI | GDGCHC | 3 cut(s) | 87, 153, 614 |
| MlyI | GAGTC | 2 cut(s) | 700, 1569 |
| MroI | TCCGGA | 1 cut(s) | 712 |
| MseI | TTAA | 2 cut(s) | 705, 1224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1466 |
| MspA1I | CMGCKG | 2 cut(s) | 662, 949 |
| MspCI | CTTAAG | 1 cut(s) | 704 |
| MspI | CCGG | 3 cut(s) | 99, 713, 806 |
| MspR9I | CCNGG | 4 cut(s) | 99, 471, 514, 806 |
| MunI | CAATTG | 1 cut(s) | 345 |
| Mva1269I | GAATGC | 2 cut(s) | 1030, 1493 |
| MvaI | CCWGG | 2 cut(s) | 471, 514 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 518, 1214, 1530 |
| NciI | CCSGG | 2 cut(s) | 99, 806 |
| NcoI | CCATGG | 1 cut(s) | 87 |
| NdeI | CATATG | 2 cut(s) | 544, 1269 |
| NdeII | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| NlaIII | CATG | 5 cut(s) | 91, 227, 451, 1471, 1579 |
| NlaIV | GGNNCC | 7 cut(s) | 9, 84, 96, 97, 137, 332, 612 |
| NmuCI | GTSAC | 4 cut(s) | 209, 527, 1172, 1457 |
| NspI | RCATGY | 1 cut(s) | 227 |
| PaeR7I | CTCGAG | 1 cut(s) | 902 |
| PagI | TCATGA | 2 cut(s) | 447, 1575 |
| PceI | AGGCCT | 1 cut(s) | 354 |
| PciSI | GCTCTTC | 2 cut(s) | 174, 1314 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 159, 847 |
| PctI | GAATGC | 2 cut(s) | 1030, 1493 |
| PfeI | GAWTC | 3 cut(s) | 451, 1007, 1294 |
| PflFI | GACNNNGTC | 1 cut(s) | 425 |
| PkrI | GCNGC | 5 cut(s) | 135, 1210, 1213, 1216, 1390 |
| PleI | GAGTC | 2 cut(s) | 699, 1568 |
| PpsI | GAGTC | 2 cut(s) | 699, 1568 |
| Ppu21I | YACGTR | 1 cut(s) | 851 |
| PpuMI | RGGWCCY | 2 cut(s) | 95, 330 |
| Psp5II | RGGWCCY | 2 cut(s) | 95, 330 |
| Psp6I | CCWGG | 2 cut(s) | 469, 512 |
| PspGI | CCWGG | 2 cut(s) | 469, 512 |
| PspN4I | GGNNCC | 7 cut(s) | 9, 84, 96, 97, 137, 332, 612 |
| PspOMI | GGGCCC | 1 cut(s) | 610 |
| PspPI | GGNCC | 8 cut(s) | 95, 101, 135, 330, 341, 610, 611, 910 |
| PspPPI | RGGWCCY | 2 cut(s) | 95, 330 |
| PstI | CTGCAG | 1 cut(s) | 1216 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1010 |
| PsuI | RGATCY | 1 cut(s) | 916 |
| PsyI | GACNNNGTC | 1 cut(s) | 425 |
| PvuII | CAGCTG | 2 cut(s) | 662, 949 |
| RsaI | GTAC | 7 cut(s) | 188, 388, 549, 574, 603, 944, 1447 |
| RsaNI | GTAC | 7 cut(s) | 187, 387, 548, 573, 602, 943, 1446 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1466 |
| SapI | GCTCTTC | 2 cut(s) | 174, 1314 |
| SaqAI | TTAA | 2 cut(s) | 705, 1224 |
| SatI | GCNGC | 5 cut(s) | 134, 1209, 1212, 1215, 1389 |
| Sau3AI | GATC | 8 cut(s) | 664, 838, 916, 1245, 1252, 1256, 1589, 1593 |
| Sau96I | GGNCC | 8 cut(s) | 95, 101, 135, 330, 341, 610, 611, 910 |
| SchI | GAGTC | 2 cut(s) | 700, 1569 |
| ScrFI | CCNGG | 4 cut(s) | 99, 471, 514, 806 |
| SduI | GDGCHC | 3 cut(s) | 87, 153, 614 |
| SfaNI | GCATC | 4 cut(s) | 154, 550, 1321, 1400 |
| SfcI | CTRYAG | 1 cut(s) | 1212 |
| Sfr274I | CTCGAG | 1 cut(s) | 902 |
| SinI | GGWCC | 3 cut(s) | 95, 330, 341 |
| SlaI | CTCGAG | 1 cut(s) | 902 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1466 |
| SmlI | CTYRAG | 2 cut(s) | 704, 902 |
| SmoI | CTYRAG | 2 cut(s) | 704, 902 |
| SseBI | AGGCCT | 1 cut(s) | 354 |
| SsiI | CCGC | 4 cut(s) | 68, 133, 177, 242 |
| SspI | AATATT | 1 cut(s) | 686 |
| SspMI | CTAG | 2 cut(s) | 32, 356 |
| StuI | AGGCCT | 1 cut(s) | 354 |
| StyD4I | CCNGG | 4 cut(s) | 97, 469, 512, 804 |
| StyI | CCWWGG | 4 cut(s) | 87, 337, 1072, 1168 |
| TaaI | ACNGT | 5 cut(s) | 209, 567, 652, 784, 1501 |
| TaiI | ACGT | 5 cut(s) | 45, 216, 426, 853, 1421 |
| TaqII | GACCGA | 1 cut(s) | 89 |
| TatI | WGTACW | 2 cut(s) | 386, 547 |
| TauI | GCSGC | 1 cut(s) | 136 |
| TfiI | GAWTC | 3 cut(s) | 451, 1007, 1294 |
| Tru1I | TTAA | 2 cut(s) | 705, 1224 |
| Tru9I | TTAA | 2 cut(s) | 705, 1224 |
| TscAI | CASTG | 4 cut(s) | 532, 621, 657, 1526 |
| TseFI | GTSAC | 4 cut(s) | 209, 527, 1172, 1457 |
| TseI | GCWGC | 4 cut(s) | 1208, 1211, 1214, 1388 |
| Tsp45I | GTSAC | 4 cut(s) | 209, 527, 1172, 1457 |
| TspDTI | ATGAA | 9 cut(s) | 594, 752, 909, 1053, 1242, 1392, 1484, 1544, 1564 |
| TspRI | CASTG | 4 cut(s) | 532, 621, 657, 1526 |
| Tth111I | GACNNNGTC | 1 cut(s) | 425 |
| Vha464I | CTTAAG | 1 cut(s) | 704 |
| VpaK11BI | GGWCC | 3 cut(s) | 95, 330, 341 |
| XapI | RAATTY | 4 cut(s) | 1048, 1090, 1116, 1200 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XhoI | CTCGAG | 1 cut(s) | 902 |
| XmiI | GTMKAC | 1 cut(s) | 489 |
| XspI | CTAG | 2 cut(s) | 32, 356 |