Peptidylprolyl isomerase domain and WD repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44600 |
| fragaria_vesca | FvH4_3g24280 FvH4_3g24280 FvH4_3g24280 |
| malus_domestica | MD03G1138000.v1.1 MD11G1160100.v1.1 |
| prunus_persica | Prupe.6G123000_v2.0.a1 Prupe.6G123000_v2.0.a1 |
| pyrus_communis | pycom03g09370 pycom11g13090 |
| rosa_chinensis | RchiOBHm_Chr5g0043591 |
| rosa_laevigata | RLG00000034204 |
| rosa_multiflora | Rmu_sc0005316.1_g000013 Rmu_sc0022835.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00037390 |
| rosa_rugosa | Rorug05G0206900 |
| rosa_samantha | Rh5AG291800 Rh5BG299000 Rh5BG299200 Rh5CG328000 Rh5DG308100 |
| rosa_wichuraiana | Rw5G027090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 887 |
| AccBSI | CCGCTC | 1 cut(s) | 96 |
| AccI | GTMKAC | 1 cut(s) | 534 |
| AccII | CGCG | 1 cut(s) | 80 |
| AciI | CCGC | 7 cut(s) | 80, 96, 119, 178, 287, 1374, 1868 |
| AclWI | GGATC | 4 cut(s) | 1412, 1425, 1751, 1894 |
| AcsI | RAATTY | 7 cut(s) | 290, 929, 1216, 1258, 1284, 1368, 2034 |
| AcuI | CTGAAG | 1 cut(s) | 1512 |
| AcyI | GRCGYC | 1 cut(s) | 210 |
| AdeI | CACNNNGTG | 1 cut(s) | 454 |
| AfaI | GTAC | 7 cut(s) | 433, 594, 619, 1104, 1112, 1774, 1977 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 56, 95, 143, 259, 395, 887 |
| AflIII | ACRYGT | 3 cut(s) | 268, 503, 1018 |
| AgsI | TTSAA | 8 cut(s) | 325, 395, 441, 733, 937, 993, 1522, 1808 |
| AjiI | CACGTC | 1 cut(s) | 259 |
| AjnI | CCWGG | 4 cut(s) | 138, 381, 514, 557 |
| AleI | CACNNNNGTG | 1 cut(s) | 1907 |
| AluBI | AGCT | 7 cut(s) | 108, 404, 614, 830, 1124, 1212, 1379 |
| AluI | AGCT | 7 cut(s) | 108, 404, 614, 830, 1124, 1212, 1379 |
| Alw26I | GTCTC | 1 cut(s) | 2004 |
| AlwI | GGATC | 4 cut(s) | 1412, 1425, 1751, 1894 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1178 |
| Ama87I | CYCGRG | 1 cut(s) | 148 |
| AoxI | GGCC | 9 cut(s) | 145, 170, 179, 397, 667, 778, 1077, 1841, 2015 |
| ApaI | GGGCCC | 2 cut(s) | 149, 782 |
| ApeKI | GCWGC | 5 cut(s) | 654, 1376, 1379, 1382, 1553 |
| ApoI | RAATTY | 7 cut(s) | 290, 929, 1216, 1258, 1284, 1368, 2034 |
| AsuC2I | CCSGG | 3 cut(s) | 149, 150, 974 |
| AsuHPI | GGTGA | 4 cut(s) | 904, 1352, 1634, 1840 |
| AsuII | TTCGAA | 2 cut(s) | 499, 927 |
| AvaI | CYCGRG | 1 cut(s) | 148 |
| AvaII | GGWCC | 3 cut(s) | 152, 375, 386 |
| BaeGI | GKGCMC | 2 cut(s) | 149, 782 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1094, 1127 |
| BamHI | GGATCC | 1 cut(s) | 1417 |
| BanII | GRGCYC | 3 cut(s) | 138, 149, 782 |
| BauI | CACGAG | 1 cut(s) | 609 |
| BbsI | GAAGAC | 3 cut(s) | 273, 1815, 2003 |
| BbvI | GCAGC | 5 cut(s) | 666, 1366, 1388, 1394, 1540 |
| BccI | CCATC | 9 cut(s) | 308, 410, 481, 575, 881, 971, 1612, 1763, 1852 |
| BceAI | ACGGC | 1 cut(s) | 98 |
| BciT130I | CCWGG | 4 cut(s) | 140, 383, 516, 559 |
| BciVI | GTATCC | 2 cut(s) | 1008, 1653 |
| BclI | TGATCA | 2 cut(s) | 832, 1728 |
| BcnI | CCSGG | 3 cut(s) | 149, 150, 974 |
| BcoDI | GTCTC | 1 cut(s) | 2004 |
| BfaI | CTAG | 2 cut(s) | 401, 639 |
| BfmI | CTRYAG | 2 cut(s) | 1380, 1983 |
| BfuI | GTATCC | 2 cut(s) | 1008, 1653 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 178, 1695 |
| BglII | AGATCT | 1 cut(s) | 1084 |
| BisI | GCNGC | 7 cut(s) | 97, 179, 655, 1377, 1380, 1383, 1554 |
| BlsI | GCNGC | 7 cut(s) | 98, 180, 656, 1378, 1381, 1384, 1555 |
| Bme1390I | CCNGG | 7 cut(s) | 140, 149, 150, 383, 516, 559, 974 |
| Bme18I | GGWCC | 3 cut(s) | 152, 375, 386 |
| BmeT110I | CYCGRG | 1 cut(s) | 148 |
| BmgBI | CACGTC | 1 cut(s) | 259 |
| BmrFI | CCNGG | 7 cut(s) | 140, 149, 150, 383, 516, 559, 974 |
| BmrI | ACTGGG | 2 cut(s) | 538, 776 |
| BmsI | GCATC | 3 cut(s) | 595, 1486, 1565 |
| BmuI | ACTGGG | 2 cut(s) | 538, 776 |
| BoxI | GACNNNNGTC | 1 cut(s) | 918 |
| BpiI | GAAGAC | 3 cut(s) | 273, 1815, 2003 |
| BpmI | CTGGAG | 1 cut(s) | 170 |
| Bpu14I | TTCGAA | 2 cut(s) | 499, 927 |
| BpuEI | CTTGAG | 2 cut(s) | 893, 1091 |
| BpuMI | CCSGG | 3 cut(s) | 149, 150, 974 |
| Bsa29I | ATCGAT | 1 cut(s) | 1856 |
| BsaAI | YACGTR | 2 cut(s) | 67, 1019 |
| BsaHI | GRCGYC | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 5 cut(s) | 138, 148, 382, 1240, 1919 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 56, 95, 143, 259, 395, 887 |
| Bse1I | ACTGG | 7 cut(s) | 187, 307, 533, 782, 918, 1122, 1780 |
| BseBI | CCWGG | 4 cut(s) | 140, 383, 516, 559 |
| BseCI | ATCGAT | 1 cut(s) | 1856 |
| BseDI | CCNNGG | 5 cut(s) | 138, 148, 382, 1240, 1919 |
| BseGI | GGATG | 4 cut(s) | 553, 892, 982, 1975 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 56, 95, 143, 259, 395, 887 |
| BseMII | CTCAG | 2 cut(s) | 104, 779 |
| BseNI | ACTGG | 7 cut(s) | 187, 307, 533, 782, 918, 1122, 1780 |
| BseRI | GAGGAG | 3 cut(s) | 143, 146, 1499 |
| BseSI | GKGCMC | 2 cut(s) | 149, 782 |
| BseXI | GCAGC | 5 cut(s) | 666, 1366, 1388, 1394, 1540 |
| Bsh1236I | CGCG | 1 cut(s) | 80 |
| BshFI | GGCC | 9 cut(s) | 147, 172, 181, 399, 669, 780, 1079, 1843, 2017 |
| BshVI | ATCGAT | 1 cut(s) | 1856 |
| BsiHKCI | CYCGRG | 1 cut(s) | 148 |
| BsiSI | CCGG | 3 cut(s) | 149, 974, 1690 |
| BslFI | GGGAC | 3 cut(s) | 165, 361, 2036 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 56, 95, 143, 259, 395, 887 |
| BsmAI | GTCTC | 1 cut(s) | 2004 |
| BsmFI | GGGAC | 3 cut(s) | 165, 361, 2036 |
| BsmI | GAATGC | 1 cut(s) | 1658 |
| BsnI | GGCC | 9 cut(s) | 147, 172, 181, 399, 669, 780, 1079, 1843, 2017 |
| BsoBI | CYCGRG | 1 cut(s) | 148 |
| Bsp119I | TTCGAA | 2 cut(s) | 499, 927 |
| Bsp120I | GGGCCC | 2 cut(s) | 145, 778 |
| Bsp1286I | GDGCHC | 3 cut(s) | 138, 149, 782 |
| Bsp1407I | TGTACA | 2 cut(s) | 431, 592 |
| Bsp143I | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| BspACI | CCGC | 7 cut(s) | 80, 96, 119, 178, 287, 1374, 1868 |
| BspANI | GGCC | 9 cut(s) | 147, 172, 181, 399, 669, 780, 1079, 1843, 2017 |
| BspCNI | CTCAG | 3 cut(s) | 4, 103, 778 |
| BspDI | ATCGAT | 1 cut(s) | 1856 |
| BspFNI | CGCG | 1 cut(s) | 80 |
| BspHI | TCATGA | 2 cut(s) | 492, 1740 |
| BspMAI | CTGCAG | 1 cut(s) | 1384 |
| BspPI | GGATC | 4 cut(s) | 1412, 1425, 1751, 1894 |
| BspT104I | TTCGAA | 2 cut(s) | 499, 927 |
| BsrBI | CCGCTC | 1 cut(s) | 96 |
| BsrGI | TGTACA | 2 cut(s) | 431, 592 |
| BsrI | ACTGG | 7 cut(s) | 187, 307, 533, 782, 918, 1122, 1780 |
| BssECI | CCNNGG | 5 cut(s) | 138, 148, 382, 1240, 1919 |
| BssMI | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| BssNI | GRCGYC | 1 cut(s) | 210 |
| BssSI | CACGAG | 1 cut(s) | 609 |
| BssT1I | CCWWGG | 2 cut(s) | 1240, 1919 |
| Bst2BI | CACGAG | 1 cut(s) | 609 |
| Bst2UI | CCWGG | 4 cut(s) | 140, 383, 516, 559 |
| Bst4CI | ACNGT | 8 cut(s) | 254, 820, 952, 1666, 1852, 1909, 1942, 2050 |
| Bst6I | CTCTTC | 2 cut(s) | 1504, 1593 |
| BstACI | GRCGYC | 1 cut(s) | 210 |
| BstAUI | TGTACA | 2 cut(s) | 431, 592 |
| BstBAI | YACGTR | 2 cut(s) | 67, 1019 |
| BstBI | TTCGAA | 2 cut(s) | 499, 927 |
| BstC8I | GCNNGC | 2 cut(s) | 198, 564 |
| BstDEI | CTNAG | 5 cut(s) | 12, 90, 765, 1503, 2055 |
| BstF5I | GGATG | 4 cut(s) | 553, 892, 982, 1975 |
| BstFNI | CGCG | 1 cut(s) | 80 |
| BstKTI | GATC | 7 cut(s) | 835, 1009, 1087, 1420, 1731, 1759, 1889 |
| BstMAI | GTCTC | 1 cut(s) | 2004 |
| BstMBI | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 105, 178, 563, 1382, 1695 |
| BstNI | CCWGG | 4 cut(s) | 140, 383, 516, 559 |
| BstNSI | RCATGY | 2 cut(s) | 200, 272 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 918 |
| BstSCI | CCNGG | 7 cut(s) | 138, 147, 148, 381, 514, 557, 972 |
| BstSFI | CTRYAG | 2 cut(s) | 1380, 1983 |
| BstSLI | GKGCMC | 2 cut(s) | 149, 782 |
| BstUI | CGCG | 1 cut(s) | 80 |
| BstV1I | GCAGC | 5 cut(s) | 666, 1366, 1388, 1394, 1540 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 1815, 2003 |
| BstX2I | RGATCY | 3 cut(s) | 1084, 1417, 1756 |
| BstYI | RGATCY | 3 cut(s) | 1084, 1417, 1756 |
| Bsu15I | ATCGAT | 1 cut(s) | 1856 |
| BsuI | GTATCC | 2 cut(s) | 1008, 1653 |
| BsuRI | GGCC | 9 cut(s) | 147, 172, 181, 399, 669, 780, 1079, 1843, 2017 |
| BsuTUI | ATCGAT | 1 cut(s) | 1856 |
| BtgZI | GCGATG | 1 cut(s) | 984 |
| BtrI | CACGTC | 1 cut(s) | 259 |
| BtsCI | GGATG | 4 cut(s) | 553, 892, 982, 1975 |
| BtsI | GCAGTG | 1 cut(s) | 1684 |
| BtsIMutI | CAGTG | 4 cut(s) | 577, 789, 825, 1684 |
| Cac8I | GCNNGC | 2 cut(s) | 198, 564 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1178 |
| CciI | TCATGA | 2 cut(s) | 492, 1740 |
| Cfr9I | CCCGGG | 1 cut(s) | 148 |
| ClaI | ATCGAT | 1 cut(s) | 1856 |
| CseI | GACGC | 2 cut(s) | 86, 218 |
| Csp6I | GTAC | 7 cut(s) | 432, 593, 618, 1103, 1111, 1773, 1976 |
| CviAII | CATG | 6 cut(s) | 197, 269, 493, 1633, 1741, 1835 |
| CviQI | GTAC | 7 cut(s) | 432, 593, 618, 1103, 1111, 1773, 1976 |
| DdeI | CTNAG | 5 cut(s) | 12, 90, 765, 1503, 2055 |
| DpnI | GATC | 7 cut(s) | 834, 1008, 1086, 1419, 1730, 1758, 1888 |
| DpnII | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| DraIII | CACNNNGTG | 1 cut(s) | 454 |
| Eam1104I | CTCTTC | 2 cut(s) | 1504, 1593 |
| EarI | CTCTTC | 2 cut(s) | 1504, 1593 |
| EciI | GGCGGA | 1 cut(s) | 302 |
| Eco130I | CCWWGG | 2 cut(s) | 1240, 1919 |
| Eco147I | AGGCCT | 2 cut(s) | 399, 1843 |
| Eco24I | GRGCYC | 3 cut(s) | 138, 149, 782 |
| Eco47I | GGWCC | 3 cut(s) | 152, 375, 386 |
| Eco57I | CTGAAG | 1 cut(s) | 1512 |
| Eco88I | CYCGRG | 1 cut(s) | 148 |
| EcoO109I | RGGNCCY | 3 cut(s) | 375, 667, 2016 |
| EcoRI | GAATTC | 2 cut(s) | 929, 1284 |
| EcoRII | CCWGG | 4 cut(s) | 138, 381, 514, 557 |
| EcoT14I | CCWWGG | 2 cut(s) | 1240, 1919 |
| EcoT38I | GRGCYC | 3 cut(s) | 138, 149, 782 |
| ErhI | CCWWGG | 2 cut(s) | 1240, 1919 |
| FaeI | CATG | 6 cut(s) | 200, 272, 496, 1636, 1744, 1838 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 546, 578 |
| FaqI | GGGAC | 3 cut(s) | 165, 361, 2036 |
| FatI | CATG | 6 cut(s) | 196, 268, 492, 1632, 1740, 1834 |
| FauI | CCCGC | 2 cut(s) | 1381, 1861 |
| FauNDI | CATATG | 1 cut(s) | 1430 |
| FbaI | TGATCA | 2 cut(s) | 832, 1728 |
| FblI | GTMKAC | 1 cut(s) | 534 |
| Fnu4HI | GCNGC | 7 cut(s) | 97, 179, 655, 1377, 1380, 1383, 1554 |
| FokI | GGATG | 4 cut(s) | 560, 899, 989, 1982 |
| FriOI | GRGCYC | 3 cut(s) | 138, 149, 782 |
| Fsp4HI | GCNGC | 7 cut(s) | 97, 179, 655, 1377, 1380, 1383, 1554 |
| FspBI | CTAG | 2 cut(s) | 401, 639 |
| GluI | GCNGC | 7 cut(s) | 97, 179, 655, 1377, 1380, 1383, 1554 |
| GsuI | CTGGAG | 1 cut(s) | 170 |
| HaeIII | GGCC | 9 cut(s) | 147, 172, 181, 399, 669, 780, 1079, 1843, 2017 |
| HapII | CCGG | 3 cut(s) | 149, 974, 1690 |
| HgaI | GACGC | 2 cut(s) | 86, 218 |
| Hin1I | GRCGYC | 1 cut(s) | 210 |
| Hin1II | CATG | 6 cut(s) | 200, 272, 496, 1636, 1744, 1838 |
| HincII | GTYRAC | 1 cut(s) | 526 |
| HindII | GTYRAC | 1 cut(s) | 526 |
| HinfI | GANTC | 7 cut(s) | 496, 859, 1053, 1064, 1175, 1234, 1455 |
| HpaII | CCGG | 3 cut(s) | 149, 974, 1690 |
| HphI | GGTGA | 4 cut(s) | 904, 1352, 1634, 1840 |
| Hpy166II | GTNNAC | 4 cut(s) | 526, 535, 595, 1829 |
| Hpy188I | TCNGA | 4 cut(s) | 93, 768, 1473, 1561 |
| Hpy188III | TCNNGA | 8 cut(s) | 493, 639, 881, 934, 1070, 1592, 1646, 1741 |
| Hpy8I | GTNNAC | 4 cut(s) | 526, 535, 595, 1829 |
| Hpy99I | CGWCG | 2 cut(s) | 212, 1053 |
| HpyAV | CCTTC | 5 cut(s) | 224, 389, 657, 1150, 1791 |
| HpyCH4III | ACNGT | 8 cut(s) | 254, 820, 952, 1666, 1852, 1909, 1942, 2050 |
| HpyCH4IV | ACGT | 6 cut(s) | 39, 66, 102, 258, 505, 1018 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 105, 178, 563, 1382, 1695 |
| HpyF3I | CTNAG | 5 cut(s) | 12, 90, 765, 1503, 2055 |
| HpySE526I | ACGT | 6 cut(s) | 39, 66, 102, 258, 505, 1018 |
| Hsp92I | GRCGYC | 1 cut(s) | 210 |
| Hsp92II | CATG | 6 cut(s) | 200, 272, 496, 1636, 1744, 1838 |
| Ksp22I | TGATCA | 2 cut(s) | 832, 1728 |
| Kzo9I | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| LmnI | GCTCC | 3 cut(s) | 85, 133, 1486 |
| Lsp1109I | GCAGC | 5 cut(s) | 666, 1366, 1388, 1394, 1540 |
| LweI | GCATC | 3 cut(s) | 595, 1486, 1565 |
| MaeI | CTAG | 2 cut(s) | 401, 639 |
| MaeII | ACGT | 6 cut(s) | 39, 66, 102, 258, 505, 1018 |
| MaeIII | GTNAC | 8 cut(s) | 254, 262, 298, 911, 1340, 1576, 1622, 2044 |
| MalI | GATC | 7 cut(s) | 834, 1008, 1086, 1419, 1730, 1758, 1888 |
| MbiI | CCGCTC | 1 cut(s) | 96 |
| MboI | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| MfeI | CAATTG | 1 cut(s) | 390 |
| MflI | RGATCY | 3 cut(s) | 1084, 1417, 1756 |
| MhlI | GDGCHC | 3 cut(s) | 138, 149, 782 |
| MlyI | GAGTC | 3 cut(s) | 868, 1062, 1228 |
| MseI | TTAA | 3 cut(s) | 722, 1443, 2062 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1631, 1907 |
| MspA1I | CMGCKG | 2 cut(s) | 830, 1379 |
| MspI | CCGG | 3 cut(s) | 149, 974, 1690 |
| MspR9I | CCNGG | 7 cut(s) | 140, 149, 150, 383, 516, 559, 974 |
| MunI | CAATTG | 1 cut(s) | 390 |
| Mva1269I | GAATGC | 1 cut(s) | 1658 |
| MvaI | CCWGG | 4 cut(s) | 140, 383, 516, 559 |
| MvnI | CGCG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 105, 178, 563, 1382, 1695 |
| NciI | CCSGG | 3 cut(s) | 149, 150, 974 |
| NdeI | CATATG | 1 cut(s) | 1430 |
| NdeII | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| NlaIII | CATG | 6 cut(s) | 200, 272, 496, 1636, 1744, 1838 |
| NmeAIII | GCCGAG | 1 cut(s) | 148 |
| NmuCI | GTSAC | 5 cut(s) | 254, 911, 1340, 1576, 1622 |
| NspI | RCATGY | 2 cut(s) | 200, 272 |
| NspV | TTCGAA | 2 cut(s) | 499, 927 |
| OliI | CACNNNNGTG | 1 cut(s) | 1907 |
| PaeI | GCATGC | 1 cut(s) | 200 |
| PagI | TCATGA | 2 cut(s) | 492, 1740 |
| PceI | AGGCCT | 2 cut(s) | 399, 1843 |
| PciI | ACATGT | 1 cut(s) | 268 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 63, 1015 |
| PctI | GAATGC | 1 cut(s) | 1658 |
| PfeI | GAWTC | 4 cut(s) | 496, 1064, 1175, 1455 |
| PflFI | GACNNNGTC | 1 cut(s) | 530 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 887 |
| PkrI | GCNGC | 7 cut(s) | 98, 180, 656, 1378, 1381, 1384, 1555 |
| PleI | GAGTC | 3 cut(s) | 867, 1061, 1228 |
| PpsI | GAGTC | 3 cut(s) | 867, 1061, 1228 |
| Ppu21I | YACGTR | 2 cut(s) | 67, 1019 |
| PpuMI | RGGWCCY | 1 cut(s) | 375 |
| PscI | ACATGT | 1 cut(s) | 268 |
| PshAI | GACNNNNGTC | 1 cut(s) | 918 |
| Psp5II | RGGWCCY | 1 cut(s) | 375 |
| Psp6I | CCWGG | 4 cut(s) | 138, 381, 514, 557 |
| PspGI | CCWGG | 4 cut(s) | 138, 381, 514, 557 |
| PspOMI | GGGCCC | 2 cut(s) | 145, 778 |
| PspPPI | RGGWCCY | 1 cut(s) | 375 |
| PstI | CTGCAG | 1 cut(s) | 1384 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1178 |
| PsuI | RGATCY | 3 cut(s) | 1084, 1417, 1756 |
| PsyI | GACNNNGTC | 1 cut(s) | 530 |
| PvuII | CAGCTG | 2 cut(s) | 830, 1379 |
| RsaI | GTAC | 7 cut(s) | 433, 594, 619, 1104, 1112, 1774, 1977 |
| RsaNI | GTAC | 7 cut(s) | 432, 593, 618, 1103, 1111, 1773, 1976 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1631, 1907 |
| SaqAI | TTAA | 3 cut(s) | 722, 1443, 2062 |
| SatI | GCNGC | 7 cut(s) | 97, 179, 655, 1377, 1380, 1383, 1554 |
| Sau3AI | GATC | 7 cut(s) | 832, 1006, 1084, 1417, 1728, 1756, 1886 |
| SchI | GAGTC | 3 cut(s) | 868, 1062, 1228 |
| ScrFI | CCNGG | 7 cut(s) | 140, 149, 150, 383, 516, 559, 974 |
| SduI | GDGCHC | 3 cut(s) | 138, 149, 782 |
| SfaNI | GCATC | 3 cut(s) | 595, 1486, 1565 |
| SfcI | CTRYAG | 2 cut(s) | 1380, 1983 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 178 |
| SfuI | TTCGAA | 2 cut(s) | 499, 927 |
| SinI | GGWCC | 3 cut(s) | 152, 375, 386 |
| SmaI | CCCGGG | 1 cut(s) | 150 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1631, 1907 |
| SmlI | CTYRAG | 2 cut(s) | 872, 1070 |
| SmoI | CTYRAG | 2 cut(s) | 872, 1070 |
| SphI | GCATGC | 1 cut(s) | 200 |
| SseBI | AGGCCT | 2 cut(s) | 399, 1843 |
| SsiI | CCGC | 7 cut(s) | 80, 96, 119, 178, 287, 1374, 1868 |
| SspMI | CTAG | 2 cut(s) | 401, 639 |
| StuI | AGGCCT | 2 cut(s) | 399, 1843 |
| StyD4I | CCNGG | 7 cut(s) | 138, 147, 148, 381, 514, 557, 972 |
| StyI | CCWWGG | 2 cut(s) | 1240, 1919 |
| TaaI | ACNGT | 8 cut(s) | 254, 820, 952, 1666, 1852, 1909, 1942, 2050 |
| TaiI | ACGT | 6 cut(s) | 42, 69, 105, 261, 508, 1021 |
| TaqI | TCGA | 7 cut(s) | 192, 207, 499, 927, 1723, 1856, 1926 |
| TatI | WGTACW | 2 cut(s) | 431, 592 |
| TauI | GCSGC | 2 cut(s) | 99, 181 |
| TfiI | GAWTC | 4 cut(s) | 496, 1064, 1175, 1455 |
| Tru1I | TTAA | 3 cut(s) | 722, 1443, 2062 |
| Tru9I | TTAA | 3 cut(s) | 722, 1443, 2062 |
| TscAI | CASTG | 4 cut(s) | 577, 789, 825, 1691 |
| TseFI | GTSAC | 5 cut(s) | 254, 911, 1340, 1576, 1622 |
| TseI | GCWGC | 5 cut(s) | 654, 1376, 1379, 1382, 1553 |
| Tsp45I | GTSAC | 5 cut(s) | 254, 911, 1340, 1576, 1622 |
| TspDTI | ATGAA | 9 cut(s) | 639, 1077, 1221, 1410, 1539, 1557, 1649, 1709, 1729 |
| TspGWI | ACGGA | 3 cut(s) | 33, 72, 1430 |
| TspMI | CCCGGG | 1 cut(s) | 148 |
| TspRI | CASTG | 4 cut(s) | 577, 789, 825, 1691 |
| Tth111I | GACNNNGTC | 1 cut(s) | 530 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 887 |
| VpaK11BI | GGWCC | 3 cut(s) | 152, 375, 386 |
| XapI | RAATTY | 7 cut(s) | 290, 929, 1216, 1258, 1284, 1368, 2034 |
| XbaI | TCTAGA | 1 cut(s) | 638 |
| XceI | RCATGY | 2 cut(s) | 200, 272 |
| XmaI | CCCGGG | 1 cut(s) | 148 |
| XmiI | GTMKAC | 1 cut(s) | 534 |
| XspI | CTAG | 2 cut(s) | 401, 639 |