Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009552

Physical Location & Seq

Genomic Coordinates Forward (+)

39660572 .. 39676164

Gene Structure 15593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1279000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAGATGGGGCTTCTCTCATCCCCCAGTATACGGTTTCTTGCCTTCTGGAGAATTCGAATGAAGGTTCTGTTTCTGCAACACGCTTTACAGTTGACCACAATATATATCCTCTCTTGCTTGATTGCCTCATTCATGGTTATGAAAAAGTTGCAACTCTAGCAATGGATGCAATAGAGAATATAGCTGGTTCTCCCGCAGGCATAGATATCGTTTTGTCAGCTAATACTAAAGAAGTTACACATCTTGGAGCTTTAGCAGCCCAATTCTCTTCACTGGGATGGGTCCGGGTTCTGGCTTTGATAGTGAGGCTATTTTCTATCTCCCCACGCGCCAACGTGGCATTAGTAGTCCAGAAGTCAAATCTACTTGGACTTTTTGAGGCAAAAATCAAGAACAATGATACCCTTTCAACATTGAGCATTTTGGAGGCTTTGTATGAGTTGTCAGAGATCGAGCATGGTAGAGAGTTTTCGACCCTTCTGCAACTGCTAAGCTCTGTAATCAGCAACAAATCAATGGAGTCGATTTTAAGAACAGGGGCAAAGGCGGTTAGTGGAAGACTTCTGTCCAAGGAGAATTACATACTAGCTGATGAATTAAGTGTAAAAACTGTATTATCAGCCATAGACAGGATACTTAGTTCAACCGGAACTCAAGAAATAGACGAATGTGAACCTGCTCTTGAAGCACTGGGTCAAATACAGTCATCAATTCAAGGAGCACAGTTTCTATTGTCAAGTTATCCACCAGCTGCAAGACATGTTATCTATACTGCTTTTGATAGGCAAGGACGTGTCGATCATCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0008150 GO:0008540 GO:0009987 GO:0016043 GO:0022607 GO:0022624 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0065003 GO:0070682 GO:0071840 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Proteasom_PSMB

Protein Analysis

272

Amino Acids

29.33

Weight (kDa)

5.25

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15180 AT3G15180
fragaria_vesca	FvH4_3g19420 FvH4_3g19420
malus_domestica	MD03G1232700.v1.1 MD11G1253400.v1.1 MD11G1279000.v1.1
prunus_persica	Prupe.4G175900_v2.0.a1
pyrus_communis	pycom03g17950
rosa_chinensis	RchiOBHm_Chr5g0032701
rosa_laevigata	RLG00000033417 RLG00000033419
rosa_multiflora	Rmu_sc0002292.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047400 Rroxscaffold_1G00047860
rosa_rugosa	Rorug05G0133100 Rorug05G0133200
rosa_samantha	Rh5AG225600 Rh5BG226800 Rh5CG254300 Rh5DG231400
rosa_wichuraiana	Rw5G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	333
AciI	CCGC	2 cut(s)	198, 551
AcsI	RAATTY	1 cut(s)	55
AfiI	CCNNNNNNNGG	3 cut(s)	34, 295, 633
AflIII	ACRYGT	2 cut(s)	763, 796
AgsI	TTSAA	4 cut(s)	414, 648, 689, 719
AjiI	CACGTC	1 cut(s)	797
AloI	GAACNNNNNNTCC	2 cut(s)	628, 660
AluBI	AGCT	6 cut(s)	188, 224, 254, 498, 593, 755
AluI	AGCT	6 cut(s)	188, 224, 254, 498, 593, 755
Alw21I	GWGCWC	1 cut(s)	727
ApeKI	GCWGC	2 cut(s)	260, 755
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	2 cut(s)	272, 742
BccI	CCATC	2 cut(s)	2, 276
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 466, 500
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	290
BfaI	CTAG	2 cut(s)	161, 590
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	630
BglI	GCCNNNNNGGC	1 cut(s)	341
BisI	GCNGC	2 cut(s)	261, 756
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	2 cut(s)	262, 757
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	286
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	3 cut(s)	22, 287, 704
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	3 cut(s)	22, 287, 704
BoxI	GACNNNNGTC	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 295, 633
Bse1I	ACTGG	3 cut(s)	28, 282, 699
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	3 cut(s)	21, 175, 287
BseLI	CCNNNNNNNGG	3 cut(s)	34, 295, 633
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	28, 282, 699
BseXI	GCAGC	2 cut(s)	272, 742
Bsh1236I	CGCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	289, 651
BslI	CCNNNNNNNGG	3 cut(s)	34, 295, 633
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	2 cut(s)	453, 802
Bsp1720I	GCTNAGC	1 cut(s)	494
BspACI	CCGC	2 cut(s)	198, 551
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	287
BspMI	ACCTGC	1 cut(s)	688
BspT104I	TTCGAA	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	28, 282, 699
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	453, 802
BssNAI	GTATAC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	573
Bst1107I	GTATAC	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	37, 94, 616, 708, 729
Bst6I	CTCTTC	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	494, 641
BstF5I	GGATG	3 cut(s)	21, 175, 287
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	456, 805
BstMBI	GATC	2 cut(s)	453, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 170, 260, 341, 689
BstNSI	RCATGY	1 cut(s)	767
BstPAI	GACNNNNGTC	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	272, 742
BstV2I	GAAGAC	1 cut(s)	568
BstZ17I	GTATAC	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	630
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	3 cut(s)	21, 175, 287
BtsIMutI	CAGTG	2 cut(s)	275, 692
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	3 cut(s)	137, 461, 764
DdeI	CTNAG	2 cut(s)	494, 641
DpnI	GATC	2 cut(s)	455, 804
DpnII	GATC	2 cut(s)	453, 802
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	573
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	140, 464, 767
FatI	CATG	3 cut(s)	136, 460, 763
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	261, 756
FokI	GGATG	3 cut(s)	8, 182, 294
Fsp4HI	GCNGC	2 cut(s)	261, 756
FspBI	CTAG	2 cut(s)	161, 590
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	261, 756
GsuI	CTGGAG	1 cut(s)	71
HapII	CCGG	2 cut(s)	289, 651
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	140, 464, 767
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	2 cut(s)	289, 651
Hpy166II	GTNNAC	3 cut(s)	33, 97, 677
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	5 cut(s)	50, 355, 394, 659, 686
Hpy8I	GTNNAC	3 cut(s)	33, 97, 677
HpyAV	CCTTC	3 cut(s)	56, 59, 491
HpyCH4III	ACNGT	5 cut(s)	37, 94, 616, 708, 729
HpyCH4IV	ACGT	2 cut(s)	339, 796
HpyCH4V	TGCA	5 cut(s)	80, 155, 173, 487, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 170, 260, 341, 689
HpyF3I	CTNAG	2 cut(s)	494, 641
HpySE526I	ACGT	2 cut(s)	339, 796
Hsp92II	CATG	3 cut(s)	140, 464, 767
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	453, 802
LmnI	GCTCC	2 cut(s)	251, 722
Lsp1109I	GCAGC	2 cut(s)	272, 742
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	161, 590
MaeII	ACGT	2 cut(s)	339, 796
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	455, 804
MboI	GATC	2 cut(s)	453, 802
MboII	GAAGA	2 cut(s)	264, 573
MhlI	GDGCHC	1 cut(s)	727
MluCI	AATT	5 cut(s)	55, 266, 580, 599, 714
MlyI	GAGTC	1 cut(s)	533
MnlI	CCTC	5 cut(s)	123, 140, 303, 376, 424
MseI	TTAA	2 cut(s)	533, 602
MslI	CAYNNNNRTG	2 cut(s)	141, 280
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	2 cut(s)	289, 651
MspR9I	CCNGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	161, 170, 260, 341, 689
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	453, 802
NlaIII	CATG	3 cut(s)	140, 464, 767
NlaIV	GGNNCC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	767
NspV	TTCGAA	1 cut(s)	59
PciI	ACATGT	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	262, 757
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	763
PshAI	GACNNNNGTC	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	755
RseI	CAYNNNNRTG	2 cut(s)	141, 280
SaqAI	TTAA	2 cut(s)	533, 602
SatI	GCNGC	2 cut(s)	261, 756
Sau3AI	GATC	2 cut(s)	453, 802
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	141, 280
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
Sse9I	AATT	5 cut(s)	55, 266, 580, 599, 714
SsiI	CCGC	2 cut(s)	198, 551
SspMI	CTAG	2 cut(s)	161, 590
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	5 cut(s)	37, 94, 616, 708, 729
TaiI	ACGT	2 cut(s)	342, 799
TaqI	TCGA	5 cut(s)	59, 456, 476, 527, 801
TasI	AATT	5 cut(s)	55, 266, 580, 599, 714
Tru1I	TTAA	2 cut(s)	533, 602
Tru9I	TTAA	2 cut(s)	533, 602
TscAI	CASTG	2 cut(s)	282, 699
TseI	GCWGC	2 cut(s)	260, 755
TspDTI	ATGAA	4 cut(s)	78, 125, 159, 612
TspRI	CASTG	2 cut(s)	282, 699
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	2 cut(s)	161, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.