Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

11886252 .. 11902675

Gene Structure 16424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGGATTTCACGGAGCTGCGGACGGCTGTGGAGGAGGCGGAGCTAGTCGACGCCCACGCCCACAACATCGTCGCCACCGACTCCTCCTTCCCCTTCATCAGTGCCTTCTCCGAAGCCAACGCCGATGCCTTATCCTATTCCCTCTCCTTCAAGAGAAGTTTGAAGGAGGTTGCGGAGCTGTACGGCTGTGACAAGAGATTGGATGCGGTTGAGGAGCATCGGAGAGTCGCCGGATTGGAGGCCATTAGCTCCAGATGCTTTGAGGCTGCGAGAATCACTGCGTTACTTATTGATGATGGACTGAGGCTGGACAAAATGCATGACATAGATTGGCATAGGAGTTTCGTGCCTGTGGTTGGGAGAATTCTGAGGATTGAGTCTCTGGCTGAGCAGATTCTTAGTGAGGAGTTGCCAGGTGGATCTTCTTGGACATTGGATGTGTTCACTGAAGCATTTGTTGGAAAGTTGAAGTCATTTGCTGATAACATTTTTGGCTTGAAAAGTGTAGCTGCGATATGCAGCGATCTGGAAATTAGTACACATGTCACTAGGAAAGATGTTGAGGAAGGTCTTTTCGAGGTTATACAGGCTGGAAAGCCTGTTCGCATATCAAATAAAAGTTTTATCGACTATATTTTCACTCGTAGTTTGGAGGTTGCTCTACTTTTTGACTTGCCAATGCAGATACACACAGGTTTTGGCGACAAAGATTTGAACTTGTGGCCATCCAATCCCCTTCATCTCCGGGCTGTGCTTGAGGACAAGAGATTTTCTAAAAGCCGCATTGTTCTTTTACATGTATCCTACCCGTTTTCACAGGAAGCATCACATCTAGCCTCTGTTTATCCCCAGGTTTACCTCGACTTTGGCTTGGCTGTACCCAAGCTCAGTGTCCACCGGATGGTATCTTCACTAAAAAGACTTTTGGAGCTTGCTCCAATTAAGAAGGTCATGTTCAGCACTGATGGATATGCATTTCCTGAAACTTTCTACATAGGTGCAAAAAAGGCACGTGACGCTGTCTTTTCAGTTCTATGTGATGCCTGTGCCGATGGTGATCTCTCAATTCCGGAAGCTATTGAGGCTGCTACAGACATCTTTTCACAAAATGCAGTTCAGTTTTACAAGATTGATAGTGCTGTCAAATCTTCTGGTGCAGCCAACAGTGTGTCCTCTGACTTTGTGAAGGTGAAGAGTAATGACTCGGAAAATCATGTCTCACTTGTTCGTGTTTTCTGGGCTGATGCATCAGGACAACAAAGATGTCGTGTTGTTCCTGCTAAGCGGTTCAATGACATCGTTACAAAAAATGGCATTGGTTTGACTTTTGCTTGTATGGGAATGACTTCTTTCACTGATGGTCCAGCTGATGAGACTAATTTGACTGGAGTGGGTGAGATCAGACTCGTGCCTGATTTATCGACTAAACGGAGAATTCCATGGGTAGAACAAGAGGAAATGGTTTTGGCCAACATGCATCTTAAACCAGGTGAAGCATGGGAATACTGCCCAAGAGAGGCCTTACGGAGGGTTTCAAAAATATTGAAAGATGAATTCAATTTGGTAATGAATGCAGGATTTGAAAATGAATTTTTTCTCTTGAAGAGTATGCTAAGGGACGGGAAAGAAGAATGGGTACCATTTGACTCAACACCCTACTGTTCCCCATCATCATATGATGCTGCTTCCCCTTTGTTTCACGAAGTTCTTGCTGCTCTCCAGTCCTTGAATATTACTGTAGAACAGTTACATGCAGAAAGTGGGAAAGGTCAATTTGAGGTGGTTCTAGGGCACACAGCTTGCCAGCATGCTGCTGACAACTTGATTTATACCCGTGAAGTTATTAGGGCCATTGCAAGGAAACACGGATTGTTGGCAACCTTTGTCCCAAAGTATGCGCTAGATGAGATTGGCTCTGGAGCCCATGTACATCTCAGTTTGTGGCAGAATGGCAAAAATGTATTCATGGCATCTGGTGGATCCTCGCAGCATGGAATGTCCAAGGTTGGGGAGGAATTTATGGCAGGGGTTTTATATCATCTCCAAGCAATTTTGGCATTTACAGCTCCAATTCCAAATAGTTACGACCGGATACAACCTAATACTTGGAGTGGAGCATACAAGTGCTGGGGAAAAGAAAACAGGGAAGCTCCATTAAGAACTGCATGCCCACCTGGAGTTCAAGCTGGTCTGGTGAGCAACTTTGAGATCAAGTCATTTGATGGGTGTGCAAATCCACACTTGGGCTTGGCTGCAATACTAGCTGCTGGCATTGATGGTCTTAGGAGACATCTTTGTCTCCCTGAACCTATTGATACAAATCCTTCTAGCCTTGAAGGAGAAATACAAAGGTTACCAACTTCACTTTTGGAGTCATTAGAAGCATTAAAGGAAGATGATCTCTTCAAAGAGTTCATTGGAGAAAAGCTATTGGTTGCCATCAAGGGAGTCCGCAAGGCAGAATTTGACTACTACGAGAAGCACAAAGATGCATACAAGCAACTTATACACCGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0008150 GO:0008540 GO:0009987 GO:0016043 GO:0022607 GO:0022624 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0065003 GO:0070682 GO:0071840 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Proteasom_PSMB

Protein Analysis

839

Amino Acids

93.15

Weight (kDa)

5.67

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidohydro_2	PF04909	223 - 376	9e-13	Amidohydrolase
Gln-synt_N_2	PF16952	399 - 481	2.1e-07	Glutamine synthetase N-terminal domain
Gln-synt_C	PF00120	502 - 831	1.4e-91	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2295
Acc65I	GGTACC	1 cut(s)	1636
AccB1I	GGYRCC	1 cut(s)	1636
AccB7I	CCANNNNNTGG	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	1069
AciI	CCGC	8 cut(s)	19, 38, 173, 206, 781, 1285, 2452, 2512
AclWI	GGATC	3 cut(s)	427, 1974, 1987
AcoI	YGGCCR	2 cut(s)	722, 1467
AcsI	RAATTY	6 cut(s)	363, 1434, 1553, 1589, 2015, 2462
AcuI	CTGAAG	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	1013
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	5 cut(s)	182, 538, 879, 1638, 1929
AfiI	CCNNNNNNNGG	7 cut(s)	356, 901, 1516, 1527, 1857, 2007, 2243
AflIII	ACRYGT	2 cut(s)	541, 796
AjnI	CCWGG	4 cut(s)	412, 849, 1486, 2173
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
Alw26I	GTCTC	5 cut(s)	384, 1222, 1367, 2281, 2303
AlwI	GGATC	3 cut(s)	427, 1974, 1987
Aor13HI	TCCGGA	1 cut(s)	1069
AoxI	GGCC	5 cut(s)	240, 722, 1467, 1518, 1848
ApoI	RAATTY	6 cut(s)	363, 1434, 1553, 1589, 2015, 2462
Asp700I	GAANNNNTTC	2 cut(s)	1345, 1593
Asp718I	GGTACC	1 cut(s)	1636
AspLEI	GCGC	1 cut(s)	1900
AspS9I	GGNCC	2 cut(s)	1361, 1848
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	5 cut(s)	1067, 1201, 1406, 1502, 2206
AvaII	GGWCC	1 cut(s)	1361
BaeGI	GKGCMC	1 cut(s)	1794
BalI	TGGCCA	2 cut(s)	724, 1469
BamHI	GGATCC	1 cut(s)	1979
BanI	GGYRCC	1 cut(s)	1636
BanII	GRGCYC	1 cut(s)	1924
BarI	GAAGNNNNNNTAC	4 cut(s)	1620, 1652, 2328, 2360
BauI	CACGAG	1 cut(s)	1406
BbrPI	CACGTG	1 cut(s)	1013
BceAI	ACGGC	2 cut(s)	39, 199
BcgI	CGANNNNNNTGC	2 cut(s)	1691, 1725
BciT130I	CCWGG	4 cut(s)	414, 851, 1488, 2175
BciVI	GTATCC	2 cut(s)	811, 2085
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	5 cut(s)	384, 1222, 1367, 2281, 2303
BfaI	CTAG	7 cut(s)	44, 549, 833, 1787, 1901, 2261, 2328
BfmI	CTRYAG	2 cut(s)	1089, 1737
BfuI	GTATCC	2 cut(s)	811, 2085
BlpI	GCTNAGC	2 cut(s)	387, 1281
Bme1390I	CCNGG	5 cut(s)	414, 746, 851, 1488, 2175
Bme18I	GGWCC	1 cut(s)	1361
BmgT120I	GGNCC	2 cut(s)	1361, 1848
BmiI	GGNNCC	3 cut(s)	1638, 1921, 1981
BmrFI	CCNGG	5 cut(s)	414, 746, 851, 1488, 2175
BplI	GAGNNNNNCTC	2 cut(s)	1898, 1930
BpmI	CTGGAG	5 cut(s)	235, 1407, 1703, 1938, 2196
Bpu10I	CCTNAGC	1 cut(s)	1613
Bpu1102I	GCTNAGC	2 cut(s)	387, 1281
BpuEI	CTTGAG	1 cut(s)	776
BpuMI	CCSGG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	1013
BsaBI	GATNNNNATC	2 cut(s)	1056, 2319
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	849, 1439, 2001
BsaWI	WCCGGW	3 cut(s)	897, 1069, 2088
BsaXI	ACNNNNNCTCC	2 cut(s)	1911, 1941
Bsc4I	CCNNNNNNNGG	7 cut(s)	356, 901, 1516, 1527, 1857, 2007, 2243
Bse1I	ACTGG	2 cut(s)	1390, 1720
Bse3DI	GCAATG	1 cut(s)	1851
Bse8I	GATNNNNATC	2 cut(s)	1056, 2319
BseAI	TCCGGA	1 cut(s)	1069
BseBI	CCWGG	4 cut(s)	414, 851, 1488, 2175
BseDI	CCNNGG	3 cut(s)	849, 1439, 2001
BseGI	GGATG	4 cut(s)	208, 442, 725, 906
BseJI	GATNNNNATC	2 cut(s)	1056, 2319
BseLI	CCNNNNNNNGG	7 cut(s)	356, 901, 1516, 1527, 1857, 2007, 2243
BseMI	GCAATG	1 cut(s)	1851
BseMII	CTCAG	5 cut(s)	293, 359, 378, 901, 1948
BseNI	ACTGG	2 cut(s)	1390, 1720
BseRI	GAGGAG	4 cut(s)	47, 73, 227, 419
BseSI	GKGCMC	1 cut(s)	1794
BseYI	CCCAGC	1 cut(s)	2127
BsgI	GTGCAG	1 cut(s)	1176
Bsh1285I	CGRYCG	1 cut(s)	2089
BshFI	GGCC	5 cut(s)	242, 724, 1469, 1520, 1850
BshNI	GGYRCC	1 cut(s)	1636
BsiEI	CGRYCG	1 cut(s)	2089
BsiSI	CCGG	5 cut(s)	231, 745, 898, 1070, 2089
BslFI	GGGAC	2 cut(s)	1631, 1871
BslI	CCNNNNNNNGG	7 cut(s)	356, 901, 1516, 1527, 1857, 2007, 2243
BsmAI	GTCTC	5 cut(s)	384, 1222, 1367, 2281, 2303
BsmFI	GGGAC	2 cut(s)	1631, 1871
BsmI	GAATGC	1 cut(s)	1576
BsnI	GGCC	5 cut(s)	242, 724, 1469, 1520, 1850
Bsp1286I	GDGCHC	2 cut(s)	1794, 1924
Bsp13I	TCCGGA	1 cut(s)	1069
Bsp1407I	TGTACA	1 cut(s)	1927
Bsp143I	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
Bsp1720I	GCTNAGC	2 cut(s)	387, 1281
Bsp19I	CCATGG	1 cut(s)	1439
BspACI	CCGC	8 cut(s)	19, 38, 173, 206, 781, 1285, 2452, 2512
BspANI	GGCC	5 cut(s)	242, 724, 1469, 1520, 1850
BspCNI	CTCAG	5 cut(s)	294, 360, 379, 900, 1947
BspEI	TCCGGA	1 cut(s)	1069
BspLI	GGNNCC	3 cut(s)	1638, 1921, 1981
BspPI	GGATC	3 cut(s)	427, 1974, 1987
BspT107I	GGYRCC	1 cut(s)	1636
BsrDI	GCAATG	1 cut(s)	1851
BsrGI	TGTACA	1 cut(s)	1927
BsrI	ACTGG	2 cut(s)	1390, 1720
BssECI	CCNNGG	3 cut(s)	849, 1439, 2001
BssMI	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	1406
BssT1I	CCWWGG	2 cut(s)	1439, 2001
Bst2BI	CACGAG	1 cut(s)	1406
Bst2UI	CCWGG	4 cut(s)	414, 851, 1488, 2175
Bst4CI	ACNGT	4 cut(s)	1166, 1661, 1738, 1746
Bst6I	CTCTTC	3 cut(s)	1187, 1598, 2408
BstACI	GRCGYC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	1927
BstBAI	YACGTR	1 cut(s)	1013
BstC8I	GCNNGC	6 cut(s)	933, 1801, 1805, 1809, 2167, 2269
BstDEI	CTNAG	9 cut(s)	302, 368, 387, 398, 887, 1281, 1613, 1934, 2282
BstDSI	CCRYGG	1 cut(s)	1439
BstEII	GGTNACC	1 cut(s)	2352
BstENI	CCTNNNNNAGG	1 cut(s)	1525
BstF5I	GGATG	4 cut(s)	208, 442, 725, 906
BstHHI	GCGC	1 cut(s)	1900
BstKTI	GATC	7 cut(s)	422, 526, 1060, 1401, 1982, 2211, 2401
BstMAI	GTCTC	5 cut(s)	384, 1222, 1367, 2281, 2303
BstMBI	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
BstMCI	CGRYCG	1 cut(s)	2089
BstMWI	GCNNNNNNNGC	7 cut(s)	255, 1007, 1016, 1082, 2054, 2063, 2261
BstNI	CCWGG	4 cut(s)	414, 851, 1488, 2175
BstNSI	RCATGY	6 cut(s)	545, 800, 1477, 1754, 1811, 2169
BstPI	GGTNACC	1 cut(s)	2352
BstSCI	CCNGG	5 cut(s)	412, 744, 849, 1486, 2173
BstSFI	CTRYAG	2 cut(s)	1089, 1737
BstSLI	GKGCMC	1 cut(s)	1794
BstX2I	RGATCY	2 cut(s)	419, 1979
BstYI	RGATCY	2 cut(s)	419, 1979
BsuI	GTATCC	2 cut(s)	811, 2085
BsuRI	GGCC	5 cut(s)	242, 724, 1469, 1520, 1850
BtgI	CCRYGG	1 cut(s)	1439
BtsCI	GGATG	4 cut(s)	208, 442, 725, 906
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	7 cut(s)	106, 276, 444, 895, 960, 1171, 1353
Cac8I	GCNNGC	6 cut(s)	933, 1801, 1805, 1809, 2167, 2269
CfoI	GCGC	1 cut(s)	1900
Cfr13I	GGNCC	2 cut(s)	1361, 1848
CseI	GACGC	2 cut(s)	59, 1025
CsiI	ACCWGGT	1 cut(s)	1486
Csp6I	GTAC	5 cut(s)	181, 537, 878, 1637, 1928
CviQI	GTAC	5 cut(s)	181, 537, 878, 1637, 1928
DdeI	CTNAG	9 cut(s)	302, 368, 387, 398, 887, 1281, 1613, 1934, 2282
DpnI	GATC	7 cut(s)	421, 525, 1059, 1400, 1981, 2210, 2400
DpnII	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
DrdI	GACNNNNNNGTC	1 cut(s)	2295
DseDI	GACNNNNNNGTC	1 cut(s)	2295
EaeI	YGGCCR	2 cut(s)	722, 1467
Eam1104I	CTCTTC	3 cut(s)	1187, 1598, 2408
EarI	CTCTTC	3 cut(s)	1187, 1598, 2408
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	1439, 2001
Eco147I	AGGCCT	1 cut(s)	1520
Eco24I	GRGCYC	1 cut(s)	1924
Eco47I	GGWCC	1 cut(s)	1361
Eco57I	CTGAAG	1 cut(s)	468
Eco72I	CACGTG	1 cut(s)	1013
Eco91I	GGTNACC	1 cut(s)	2352
EcoNI	CCTNNNNNAGG	1 cut(s)	1525
EcoO65I	GGTNACC	1 cut(s)	2352
EcoRI	GAATTC	3 cut(s)	363, 1434, 1553
EcoRII	CCWGG	4 cut(s)	412, 849, 1486, 2173
EcoT14I	CCWWGG	2 cut(s)	1439, 2001
EcoT22I	ATGCAT	5 cut(s)	321, 976, 1249, 1479, 2494
EcoT38I	GRGCYC	1 cut(s)	1924
ErhI	CCWWGG	2 cut(s)	1439, 2001
FaqI	GGGAC	2 cut(s)	1631, 1871
FauNDI	CATATG	1 cut(s)	1675
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	4 cut(s)	215, 449, 712, 913
FriOI	GRGCYC	1 cut(s)	1924
FspBI	CTAG	7 cut(s)	44, 549, 833, 1787, 1901, 2261, 2328
GlaI	GCGC	1 cut(s)	1899
GsaI	CCCAGC	1 cut(s)	2131
GsuI	CTGGAG	5 cut(s)	235, 1407, 1703, 1938, 2196
HaeIII	GGCC	5 cut(s)	242, 724, 1469, 1520, 1850
HapII	CCGG	5 cut(s)	231, 745, 898, 1070, 2089
HgaI	GACGC	2 cut(s)	59, 1025
HhaI	GCGC	1 cut(s)	1900
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	1898
HinP1I	GCGC	1 cut(s)	1898
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HpaII	CCGG	5 cut(s)	231, 745, 898, 1070, 2089
HphI	GGTGA	5 cut(s)	1067, 1201, 1406, 1502, 2206
Hpy166II	GTNNAC	5 cut(s)	49, 444, 539, 856, 895
Hpy188I	TCNGA	6 cut(s)	112, 222, 369, 1177, 1207, 1403
Hpy188III	TCNNGA	9 cut(s)	151, 252, 527, 980, 1070, 1251, 1600, 1700, 1917
Hpy8I	GTNNAC	5 cut(s)	49, 444, 539, 856, 895
Hpy99I	CGWCG	2 cut(s)	53, 74
HpyCH4III	ACNGT	4 cut(s)	1166, 1661, 1738, 1746
HpyCH4IV	ACGT	1 cut(s)	1012
HpyF10VI	GCNNNNNNNGC	7 cut(s)	255, 1007, 1016, 1082, 2054, 2063, 2261
HpyF3I	CTNAG	9 cut(s)	302, 368, 387, 398, 887, 1281, 1613, 1934, 2282
HpySE526I	ACGT	1 cut(s)	1012
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	1 cut(s)	1898
Kpn2I	TCCGGA	1 cut(s)	1069
KpnI	GGTACC	1 cut(s)	1640
Kzo9I	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
MabI	ACCWGGT	1 cut(s)	1486
MaeI	CTAG	7 cut(s)	44, 549, 833, 1787, 1901, 2261, 2328
MaeII	ACGT	1 cut(s)	1012
MaeIII	GTNAC	8 cut(s)	188, 282, 544, 1013, 1300, 1746, 2081, 2352
MalI	GATC	7 cut(s)	421, 525, 1059, 1400, 1981, 2210, 2400
MboI	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
MboII	GAAGA	8 cut(s)	414, 900, 1140, 1204, 1615, 1640, 2395, 2405
MflI	RGATCY	2 cut(s)	419, 1979
MhlI	GDGCHC	2 cut(s)	1794, 1924
MlsI	TGGCCA	2 cut(s)	724, 1469
MluNI	TGGCCA	2 cut(s)	724, 1469
MlyI	GAGTC	8 cut(s)	74, 234, 386, 1196, 1398, 1640, 2381, 2457
MmeI	TCCRAC	1 cut(s)	439
Mox20I	TGGCCA	2 cut(s)	724, 1469
Mph1103I	ATGCAT	5 cut(s)	321, 976, 1249, 1479, 2494
MroI	TCCGGA	1 cut(s)	1069
MroXI	GAANNNNTTC	2 cut(s)	1345, 1593
MscI	TGGCCA	2 cut(s)	724, 1469
MseI	TTAA	4 cut(s)	942, 1482, 2156, 2387
MslI	CAYNNNNRTG	2 cut(s)	2122, 2487
Msp20I	TGGCCA	2 cut(s)	724, 1469
MspA1I	CMGCKG	1 cut(s)	1367
MspI	CCGG	5 cut(s)	231, 745, 898, 1070, 2089
MspR9I	CCNGG	5 cut(s)	414, 746, 851, 1488, 2175
Mva1269I	GAATGC	1 cut(s)	1576
MvaI	CCWGG	4 cut(s)	414, 851, 1488, 2175
MwoI	GCNNNNNNNGC	7 cut(s)	255, 1007, 1016, 1082, 2054, 2063, 2261
NciI	CCSGG	1 cut(s)	746
NcoI	CCATGG	1 cut(s)	1439
NdeI	CATATG	1 cut(s)	1675
NdeII	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
NlaIV	GGNNCC	3 cut(s)	1638, 1921, 1981
NmuCI	GTSAC	3 cut(s)	188, 544, 1013
NsiI	ATGCAT	5 cut(s)	321, 976, 1249, 1479, 2494
NspI	RCATGY	6 cut(s)	545, 800, 1477, 1754, 1811, 2169
PaeI	GCATGC	2 cut(s)	1811, 2169
PceI	AGGCCT	1 cut(s)	1520
PciI	ACATGT	2 cut(s)	541, 796
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1576
PdmI	GAANNNNTTC	2 cut(s)	1345, 1593
PfeI	GAWTC	2 cut(s)	273, 394
PflFI	GACNNNGTC	1 cut(s)	1019
PflMI	CCANNNNNTGG	1 cut(s)	901
PleI	GAGTC	8 cut(s)	74, 233, 385, 1196, 1398, 1640, 2380, 2456
PmaCI	CACGTG	1 cut(s)	1013
PmlI	CACGTG	1 cut(s)	1013
PpsI	GAGTC	8 cut(s)	74, 233, 385, 1196, 1398, 1640, 2380, 2456
Ppu21I	YACGTR	1 cut(s)	1013
PscI	ACATGT	2 cut(s)	541, 796
Psp6I	CCWGG	4 cut(s)	412, 849, 1486, 2173
PspCI	CACGTG	1 cut(s)	1013
PspEI	GGTNACC	1 cut(s)	2352
PspFI	CCCAGC	1 cut(s)	2127
PspGI	CCWGG	4 cut(s)	412, 849, 1486, 2173
PspN4I	GGNNCC	3 cut(s)	1638, 1921, 1981
PspPI	GGNCC	2 cut(s)	1361, 1848
PsuI	RGATCY	2 cut(s)	419, 1979
PsyI	GACNNNGTC	1 cut(s)	1019
PvuII	CAGCTG	1 cut(s)	1367
RsaI	GTAC	5 cut(s)	182, 538, 879, 1638, 1929
RsaNI	GTAC	5 cut(s)	181, 537, 878, 1637, 1928
RseI	CAYNNNNRTG	2 cut(s)	2122, 2487
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	942, 1482, 2156, 2387
Sau3AI	GATC	7 cut(s)	419, 523, 1057, 1398, 1979, 2208, 2398
Sau96I	GGNCC	2 cut(s)	1361, 1848
SchI	GAGTC	8 cut(s)	74, 234, 386, 1196, 1398, 1640, 2381, 2457
ScrFI	CCNGG	5 cut(s)	414, 746, 851, 1488, 2175
SduI	GDGCHC	2 cut(s)	1794, 1924
SexAI	ACCWGGT	1 cut(s)	1486
SfcI	CTRYAG	2 cut(s)	1089, 1737
SinI	GGWCC	1 cut(s)	1361
SmiMI	CAYNNNNRTG	2 cut(s)	2122, 2487
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	2 cut(s)	1811, 2169
SseBI	AGGCCT	1 cut(s)	1520
SsiI	CCGC	8 cut(s)	19, 38, 173, 206, 781, 1285, 2452, 2512
SspI	AATATT	2 cut(s)	1542, 1732
SspMI	CTAG	7 cut(s)	44, 549, 833, 1787, 1901, 2261, 2328
StuI	AGGCCT	1 cut(s)	1520
StyD4I	CCNGG	5 cut(s)	412, 744, 849, 1486, 2173
StyI	CCWWGG	2 cut(s)	1439, 2001
TaaI	ACNGT	4 cut(s)	1166, 1661, 1738, 1746
TaiI	ACGT	1 cut(s)	1015
TaqI	TCGA	5 cut(s)	48, 576, 627, 861, 1421
TatI	WGTACW	2 cut(s)	536, 1927
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	2 cut(s)	273, 394
Tru1I	TTAA	4 cut(s)	942, 1482, 2156, 2387
Tru9I	TTAA	4 cut(s)	942, 1482, 2156, 2387
TscAI	CASTG	7 cut(s)	106, 283, 451, 895, 967, 1171, 1360
TseFI	GTSAC	3 cut(s)	188, 544, 1013
Tsp45I	GTSAC	3 cut(s)	188, 544, 1013
TspDTI	ATGAA	7 cut(s)	85, 728, 1566, 1583, 1602, 1954, 2404
TspGWI	ACGGA	4 cut(s)	26, 1444, 1540, 1881
TspRI	CASTG	7 cut(s)	106, 283, 451, 895, 967, 1171, 1360
Tth111I	GACNNNGTC	1 cut(s)	1019
Van91I	CCANNNNNTGG	1 cut(s)	901
VpaK11BI	GGWCC	1 cut(s)	1361
XagI	CCTNNNNNAGG	1 cut(s)	1525
XapI	RAATTY	6 cut(s)	363, 1434, 1553, 1589, 2015, 2462
XceI	RCATGY	6 cut(s)	545, 800, 1477, 1754, 1811, 2169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1494
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	2 cut(s)	1345, 1593
XspI	CTAG	7 cut(s)	44, 549, 833, 1787, 1901, 2261, 2328
Zsp2I	ATGCAT	5 cut(s)	321, 976, 1249, 1479, 2494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.