Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Forward (+)

5116021 .. 5117615

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACCCTCGAATCCCAATTCAAAGTCCTTTCGCTTAAGGGAATCTCTTGTTCGTCACCATCTTCTTCCTTCTCCAATCGTCGTGGTGCTTCGGCTACCTTATCCTCTTCCCTTAGCTTCTCTCAGAGCGTTTCTCAATGCGTCGCCTTCTCAACCGGGAATTTGTGGGTACAGAAGCCAATGAGGCAATTGATTGTGTGTGAGGCTGCTGCTCCTACCAAGAAAGCTGATTCAGCTGCAAAGAGAGCTCGCCAAGCTGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGTACCCGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTCAAGAAGAAAACTGATGCGCAAGCTGATGAGATTGTGACGGTGGAGAAACTGATAGGAGAGGCTTATTCTGCAATTGACAAAGCAGTGAAGGTTAAAGCACTACACAAGAACACTGGTGCCCGTAGGAAGTCTCGATTGGCTAGGAGGAAAAAAGCCGTTGAAATTCACCATGGTTGGTACGTCCCAGACGCAGCTGCTGCAGCACCATCAGAAGCTGTGCCCATGGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

202

Amino Acids

21.83

Weight (kDa)

10.14

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S20p	PF01649	88 - 174	2.4e-19	Ribosomal protein S20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	193, 537
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	204, 337, 554
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	55, 536
AjuI	GAANNNNNNNTTGG	4 cut(s)	338, 370, 494, 526
AluBI	AGCT	8 cut(s)	150, 260, 269, 281, 290, 398, 569, 590
AluI	AGCT	8 cut(s)	150, 260, 269, 281, 290, 398, 569, 590
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	510
AlwNI	CAGNNNCTG	2 cut(s)	572, 590
ApeKI	GCWGC	8 cut(s)	239, 242, 269, 566, 569, 572, 575, 602
ApoI	RAATTY	2 cut(s)	193, 537
AspLEI	GCGC	1 cut(s)	394
AsuC2I	CCSGG	2 cut(s)	190, 340
AsuHPI	GGTGA	2 cut(s)	81, 533
BaeGI	GKGCMC	2 cut(s)	496, 597
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	283, 375
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	8 cut(s)	226, 229, 256, 556, 559, 578, 587, 589
BccI	CCATC	2 cut(s)	100, 589
BceAI	ACGGC	1 cut(s)	515
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	190, 340
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	573
BfrI	CTTAAG	1 cut(s)	68
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	8 cut(s)	240, 243, 270, 567, 570, 573, 576, 603
BlsI	GCNGC	8 cut(s)	241, 244, 271, 568, 571, 574, 577, 604
Bme1390I	CCNGG	2 cut(s)	190, 340
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	190, 340
BmsI	GCATC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
Bpu10I	CCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	359, 386
BpuMI	CCSGG	2 cut(s)	190, 340
BsaJI	CCNNGG	2 cut(s)	544, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	493
BseDI	CCNNGG	2 cut(s)	544, 597
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	170, 282
BseNI	ACTGG	1 cut(s)	493
BseSI	GKGCMC	2 cut(s)	496, 597
BseXI	GCAGC	8 cut(s)	226, 229, 256, 556, 559, 578, 587, 589
BsgI	GTGCAG	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	189, 340
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	542
Bsp1286I	GDGCHC	4 cut(s)	283, 375, 496, 597
Bsp19I	CCATGG	2 cut(s)	544, 597
BspCNI	CTCAG	2 cut(s)	169, 283
BspLI	GGNNCC	1 cut(s)	493
BspMAI	CTGCAG	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	544, 597
BssT1I	CCWWGG	2 cut(s)	544, 597
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	145, 290
BstAFI	CTTAAG	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	283, 396
BstDEI	CTNAG	4 cut(s)	146, 156, 291, 318
BstDSI	CCRYGG	2 cut(s)	544, 597
BstF5I	GGATG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	7 cut(s)	217, 266, 278, 287, 443, 572, 575
BstSCI	CCNGG	2 cut(s)	188, 338
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	2 cut(s)	496, 597
BstV1I	GCAGC	8 cut(s)	226, 229, 256, 556, 559, 578, 587, 589
BtgI	CCRYGG	2 cut(s)	544, 597
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	2 cut(s)	23, 465
BtsIMutI	CAGTG	3 cut(s)	23, 465, 486
Cac8I	GCNNGC	2 cut(s)	283, 396
CaiI	CAGNNNCTG	2 cut(s)	572, 590
CfoI	GCGC	1 cut(s)	394
CseI	GACGC	2 cut(s)	163, 572
Csp6I	GTAC	3 cut(s)	203, 336, 553
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	2 cut(s)	545, 598
CviQI	GTAC	3 cut(s)	203, 336, 553
DdeI	CTNAG	4 cut(s)	146, 156, 291, 318
Eam1104I	CTCTTC	2 cut(s)	145, 290
EarI	CTCTTC	2 cut(s)	145, 290
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	544, 597
Eco24I	GRGCYC	2 cut(s)	283, 375
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	544, 597
EcoT38I	GRGCYC	2 cut(s)	283, 375
ErhI	CCWWGG	2 cut(s)	544, 597
FaeI	CATG	2 cut(s)	548, 601
FaiI	YATR	3 cut(s)	546, 599, 607
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	544, 597
Fnu4HI	GCNGC	8 cut(s)	240, 243, 270, 567, 570, 573, 576, 603
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	2 cut(s)	283, 375
Fsp4HI	GCNGC	8 cut(s)	240, 243, 270, 567, 570, 573, 576, 603
FspBI	CTAG	1 cut(s)	516
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	8 cut(s)	240, 243, 270, 567, 570, 573, 576, 603
HapII	CCGG	2 cut(s)	189, 340
HgaI	GACGC	2 cut(s)	163, 572
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	548, 601
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	3 cut(s)	44, 75, 263
HpaII	CCGG	2 cut(s)	189, 340
HphI	GGTGA	2 cut(s)	81, 533
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	159, 328, 586
Hpy188III	TCNNGA	2 cut(s)	376, 507
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	3 cut(s)	10, 117, 179
HpyAV	CCTTC	4 cut(s)	112, 190, 343, 457
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	5 cut(s)	16, 272, 446, 575, 605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	217, 266, 278, 287, 443, 572, 575
HpyF3I	CTNAG	4 cut(s)	146, 156, 291, 318
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	548, 601
HspAI	GCGC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	43, 202, 353, 474, 573
Lsp1109I	GCAGC	8 cut(s)	226, 229, 256, 556, 559, 578, 587, 589
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	87, 409
MboII	GAAGA	7 cut(s)	18, 87, 90, 132, 307, 358, 391
MfeI	CAATTG	2 cut(s)	221, 447
MhlI	GDGCHC	4 cut(s)	283, 375, 496, 597
MluCI	AATT	5 cut(s)	50, 193, 221, 447, 537
MnlI	CCTC	8 cut(s)	50, 148, 210, 229, 291, 361, 427, 513
MseI	TTAA	2 cut(s)	69, 468
MspA1I	CMGCKG	2 cut(s)	269, 569
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	2 cut(s)	189, 340
MspR9I	CCNGG	2 cut(s)	190, 340
MunI	CAATTG	2 cut(s)	221, 447
MwoI	GCNNNNNNNGC	7 cut(s)	217, 266, 278, 287, 443, 572, 575
NciI	CCSGG	2 cut(s)	190, 340
NcoI	CCATGG	2 cut(s)	544, 597
NlaIII	CATG	2 cut(s)	548, 601
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	87, 409
NsbI	TGCGCA	1 cut(s)	393
PfeI	GAWTC	3 cut(s)	44, 75, 263
PkrI	GCNGC	8 cut(s)	241, 244, 271, 568, 571, 574, 577, 604
Psp124BI	GAGCTC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	2 cut(s)	572, 590
PvuII	CAGCTG	2 cut(s)	269, 569
RsaI	GTAC	3 cut(s)	204, 337, 554
RsaNI	GTAC	3 cut(s)	203, 336, 553
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	69, 468
SatI	GCNGC	8 cut(s)	240, 243, 270, 567, 570, 573, 576, 603
ScrFI	CCNGG	2 cut(s)	190, 340
SduI	GDGCHC	4 cut(s)	283, 375, 496, 597
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	573
SmlI	CTYRAG	3 cut(s)	68, 365, 374
SmoI	CTYRAG	3 cut(s)	68, 365, 374
Sse9I	AATT	5 cut(s)	50, 193, 221, 447, 537
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	188, 338
StyI	CCWWGG	2 cut(s)	544, 597
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	42, 508
TasI	AATT	5 cut(s)	50, 193, 221, 447, 537
TfiI	GAWTC	3 cut(s)	44, 75, 263
Tru1I	TTAA	2 cut(s)	69, 468
Tru9I	TTAA	2 cut(s)	69, 468
TscAI	CASTG	3 cut(s)	23, 465, 493
TseFI	GTSAC	2 cut(s)	87, 409
TseI	GCWGC	8 cut(s)	239, 242, 269, 566, 569, 572, 575, 602
Tsp45I	GTSAC	2 cut(s)	87, 409
TspDTI	ATGAA	1 cut(s)	359
TspRI	CASTG	3 cut(s)	23, 465, 493
Vha464I	CTTAAG	1 cut(s)	68
XapI	RAATTY	2 cut(s)	193, 537
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.