Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

48820104 .. 48821947

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAAGCGCCATCAGGTCGATTATACGCAATGGAGCGAGGGCTGAAGATTCCTCAGAACAAGTGCACCAAGACCACCAATTCCCTCCTGATTTCACTCATGAAGCAGCTTGAAAAGCTTGAGCAGAAGCAGAAGTATGCGGCTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCCCTCTGCAGATAGCATTGGAGGGCAGTTACAAGGAAGAATTTGTTCAAGGAATTTGACAACCATCAATGAAGACTTCATAAGAGACATGTTTTGGAACAACATGTGTATCAGCTTGGCCCCTATGAATGGGCAAAGTATGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

115

Amino Acids

12.88

Weight (kDa)

9.72

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	240, 253
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	197, 329
AflIII	ACRYGT	2 cut(s)	288, 303
AgsI	TTSAA	2 cut(s)	113, 249
AluBI	AGCT	4 cut(s)	109, 118, 170, 315
AluI	AGCT	4 cut(s)	109, 118, 170, 315
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	279
Alw44I	GTGCAC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	199, 318
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	106, 152
ApoI	RAATTY	2 cut(s)	240, 253
Asp700I	GAANNNNTTC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	200, 319
AxyI	CCTNAGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	292, 325
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	118, 164
BccI	CCATC	2 cut(s)	19, 272
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	3 cut(s)	107, 141, 153
BlsI	GCNGC	3 cut(s)	108, 142, 154
BmgT120I	GGNCC	2 cut(s)	200, 319
BmiI	GGNNCC	2 cut(s)	202, 321
BpiI	GAAGAC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 329
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	197, 329
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	68, 206
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	118, 164
BshFI	GGCC	2 cut(s)	201, 320
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	197, 329
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	201, 320
Bsp1286I	GDGCHC	1 cut(s)	68
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	201, 320
BspCNI	CTCAG	2 cut(s)	67, 205
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	202, 321
BspMAI	CTGCAG	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	54, 192
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 149
BstNSI	RCATGY	2 cut(s)	292, 307
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	118, 164
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	201, 320
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	200, 319
CviAII	CATG	3 cut(s)	100, 289, 304
CviJI	RGCY	9 cut(s)	43, 109, 118, 143, 170, 197, 201, 315, 320
CviKI_1	RGCY	9 cut(s)	43, 109, 118, 143, 170, 197, 201, 315, 320
DdeI	CTNAG	2 cut(s)	54, 192
Eco57I	CTGAAG	1 cut(s)	65
Eco81I	CCTNAGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	103, 292, 307
FaiI	YATR	9 cut(s)	25, 101, 138, 161, 281, 290, 305, 326, 341
FatI	CATG	3 cut(s)	99, 288, 303
Fnu4HI	GCNGC	3 cut(s)	107, 141, 153
Fsp4HI	GCNGC	3 cut(s)	107, 141, 153
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	107, 141, 153
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	201, 320
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	103, 292, 307
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	3 cut(s)	88, 100, 345
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	173, 177
HpyCH4V	TGCA	2 cut(s)	66, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 149
HpyF3I	CTNAG	2 cut(s)	54, 192
Hsp92II	CATG	3 cut(s)	103, 292, 307
HspAI	GCGC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	101, 179, 183
Lsp1109I	GCAGC	2 cut(s)	118, 164
MaeIII	GTNAC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	58, 249, 284
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	3 cut(s)	79, 240, 253
MnlI	CCTC	6 cut(s)	32, 63, 95, 201, 214, 215
MroXI	GAANNNNTTC	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	115, 149
NlaIII	CATG	3 cut(s)	103, 292, 307
NlaIV	GGNNCC	2 cut(s)	202, 321
NspI	RCATGY	2 cut(s)	292, 307
PagI	TCATGA	1 cut(s)	99
PciI	ACATGT	2 cut(s)	288, 303
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	108, 142, 154
PscI	ACATGT	2 cut(s)	288, 303
PspN4I	GGNNCC	2 cut(s)	202, 321
PspPI	GGNCC	2 cut(s)	200, 319
PstI	CTGCAG	1 cut(s)	211
SatI	GCNGC	3 cut(s)	107, 141, 153
Sau96I	GGNCC	2 cut(s)	200, 319
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	6 cut(s)	19, 111, 120, 172, 193, 317
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	79, 240, 253
SsiI	CCGC	1 cut(s)	140
TaqI	TCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	79, 240, 253
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	106, 152
TspDTI	ATGAA	4 cut(s)	116, 268, 285, 341
VneI	GTGCAC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	240, 253
XceI	RCATGY	2 cut(s)	292, 307
XmnI	GAANNNNTTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.