Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

62300902 .. 62303606

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGTTGAATGTGGAGGGAAATGACGCGCGAGTTGAAGATAATGCCATCACTAAGGACGCCAAGGACTCGAATTCTTCAGCTTCATCACTAGCTGCTCCAACCAAGAGGCTTGATTATGTCGAAAAGCAAGCTTGCCAAGCTGAGAAAAGGCGCATTTACAACAAGTCCAAAAAGTCCGAGATCAAAACCAGGTTAAAGAAGGTCCGTTATGGTTTCAATGAGGTACGTATTCCTACTCGACCTTATCATGTTTTATTCCCATCTTTTGTTTCATCTCTTGTTATGTGTGTAAGAGGTAGAATTAGGTGTTCTAAGAAGCACTTGCTAACTTTTAAGCCTTTGGGATTAAAAAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

10.18

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	361
AccII	CGCG	2 cut(s)	29, 31
AcsI	RAATTY	2 cut(s)	73, 355
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	10, 38, 220
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	4 cut(s)	83, 95, 134, 143
AluI	AGCT	4 cut(s)	83, 95, 134, 143
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	73, 355
AspLEI	GCGC	2 cut(s)	31, 156
AspS9I	GGNCC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	2 cut(s)	56, 271
BciT130I	CCWGG	1 cut(s)	193
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	29, 31
Bsp143I	GATC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	2 cut(s)	29, 31
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	132, 136
BstDEI	CTNAG	3 cut(s)	54, 144, 315
BstFNI	CGCG	2 cut(s)	29, 31
BstHHI	GCGC	2 cut(s)	31, 156
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	230
BstUI	CGCG	2 cut(s)	29, 31
BstV1I	GCAGC	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	132, 136
CfoI	GCGC	2 cut(s)	31, 156
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	2 cut(s)	35, 68
CsiI	ACCWGGT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	6 cut(s)	83, 95, 112, 134, 143, 340
CviKI_1	RGCY	6 cut(s)	83, 95, 112, 134, 143, 340
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	54, 144, 315
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	254
FaiI	YATR	5 cut(s)	120, 213, 252, 287, 361
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	30, 155
GluI	GCNGC	1 cut(s)	96
HgaI	GACGC	2 cut(s)	35, 68
HhaI	GCGC	2 cut(s)	31, 156
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	29, 154
HinP1I	GCGC	2 cut(s)	29, 154
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	3 cut(s)	54, 144, 315
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	2 cut(s)	29, 154
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	178, 205
Lsp1109I	GCAGC	1 cut(s)	82
MabI	ACCWGGT	1 cut(s)	191
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	229
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	2 cut(s)	50, 69
MluCI	AATT	3 cut(s)	73, 303, 355
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	10, 102, 217, 290
MseI	TTAA	3 cut(s)	197, 336, 350
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	29, 31
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	197, 336, 350
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	191
SinI	GGWCC	1 cut(s)	205
SnaBI	TACGTA	1 cut(s)	230
Sse9I	AATT	3 cut(s)	73, 303, 355
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	71, 123, 241
TasI	AATT	3 cut(s)	73, 303, 355
Tru1I	TTAA	3 cut(s)	197, 336, 350
Tru9I	TTAA	3 cut(s)	197, 336, 350
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	17, 75, 264
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	2 cut(s)	73, 355
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.