Vacuolar protein sorting-associated protein VTA1 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15190 |
| fragaria_vesca | FvH4_3g19430 |
| malus_domestica | MD03G1232600.v1.1 MD11G1253300.v1.1 |
| prunus_persica | Prupe.4G176000_v2.0.a1 |
| pyrus_communis | pycom03g17940 pycom11g22450 |
| rosa_chinensis | RchiOBHm_Chr5g0032711 |
| rosa_laevigata | RLG00000022904 RLG00000033418 |
| rosa_multiflora | Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870 |
| rosa_rugosa | Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500 |
| rosa_samantha | Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500 |
| rosa_wichuraiana | Rw5G020690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 110 |
| AcuI | CTGAAG | 1 cut(s) | 35 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 168, 180 |
| AluBI | AGCT | 3 cut(s) | 79, 88, 141 |
| AluI | AGCT | 3 cut(s) | 79, 88, 141 |
| Alw21I | GWGCWC | 1 cut(s) | 38 |
| Alw44I | GTGCAC | 1 cut(s) | 34 |
| AoxI | GGCC | 1 cut(s) | 170 |
| ApaLI | GTGCAC | 1 cut(s) | 34 |
| ApeKI | GCWGC | 1 cut(s) | 76 |
| AspS9I | GGNCC | 1 cut(s) | 171 |
| BaeGI | GKGCMC | 1 cut(s) | 38 |
| Bbv12I | GWGCWC | 1 cut(s) | 38 |
| BbvI | GCAGC | 1 cut(s) | 88 |
| BfaI | CTAG | 1 cut(s) | 80 |
| BisI | GCNGC | 2 cut(s) | 77, 111 |
| BlsI | GCNGC | 2 cut(s) | 78, 112 |
| BmgT120I | GGNCC | 1 cut(s) | 171 |
| BmiI | GGNNCC | 1 cut(s) | 173 |
| BpuEI | CTTGAG | 1 cut(s) | 110 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 168, 180 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 168, 180 |
| BseSI | GKGCMC | 1 cut(s) | 38 |
| BseXI | GCAGC | 1 cut(s) | 88 |
| BshFI | GGCC | 1 cut(s) | 172 |
| BsiHKAI | GWGCWC | 1 cut(s) | 38 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 168, 180 |
| BsnI | GGCC | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 38 |
| BspACI | CCGC | 1 cut(s) | 110 |
| BspANI | GGCC | 1 cut(s) | 172 |
| BspHI | TCATGA | 1 cut(s) | 69 |
| BspLI | GGNNCC | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 1 cut(s) | 170 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 73, 85 |
| BstSLI | GKGCMC | 1 cut(s) | 38 |
| BstV1I | GCAGC | 1 cut(s) | 88 |
| BsuRI | GGCC | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 1 cut(s) | 170 |
| CciI | TCATGA | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 1 cut(s) | 171 |
| CviAII | CATG | 1 cut(s) | 70 |
| CviJI | RGCY | 5 cut(s) | 13, 79, 88, 141, 172 |
| CviKI_1 | RGCY | 5 cut(s) | 13, 79, 88, 141, 172 |
| Eco57I | CTGAAG | 1 cut(s) | 35 |
| FaeI | CATG | 1 cut(s) | 73 |
| FaiI | YATR | 4 cut(s) | 71, 108, 132, 144 |
| FatI | CATG | 1 cut(s) | 69 |
| Fnu4HI | GCNGC | 2 cut(s) | 77, 111 |
| Fsp4HI | GCNGC | 2 cut(s) | 77, 111 |
| FspBI | CTAG | 1 cut(s) | 80 |
| GluI | GCNGC | 2 cut(s) | 77, 111 |
| HaeIII | GGCC | 1 cut(s) | 172 |
| Hin1II | CATG | 1 cut(s) | 73 |
| HindIII | AAGCTT | 1 cut(s) | 86 |
| HinfI | GANTC | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 1 cut(s) | 36 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 2 cut(s) | 58, 70 |
| Hpy8I | GTNNAC | 1 cut(s) | 36 |
| HpyAV | CCTTC | 2 cut(s) | 144, 148 |
| HpyCH4V | TGCA | 1 cut(s) | 36 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 73, 85 |
| Hsp92II | CATG | 1 cut(s) | 73 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 3 cut(s) | 71, 154, 166 |
| Lsp1109I | GCAGC | 1 cut(s) | 88 |
| MaeI | CTAG | 1 cut(s) | 80 |
| MboII | GAAGA | 1 cut(s) | 28 |
| MhlI | GDGCHC | 1 cut(s) | 38 |
| MluCI | AATT | 1 cut(s) | 49 |
| MnlI | CCTC | 2 cut(s) | 65, 172 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 73, 85 |
| NlaIII | CATG | 1 cut(s) | 73 |
| NlaIV | GGNNCC | 1 cut(s) | 173 |
| PagI | TCATGA | 1 cut(s) | 69 |
| PfeI | GAWTC | 1 cut(s) | 19 |
| PkrI | GCNGC | 2 cut(s) | 78, 112 |
| PspN4I | GGNNCC | 1 cut(s) | 173 |
| PspPI | GGNCC | 1 cut(s) | 171 |
| SatI | GCNGC | 2 cut(s) | 77, 111 |
| Sau96I | GGNCC | 1 cut(s) | 171 |
| SduI | GDGCHC | 1 cut(s) | 38 |
| SetI | ASST | 4 cut(s) | 81, 90, 143, 164 |
| SgeI | CNNG | 9 cut(s) | 20, 43, 52, 70, 82, 92, 101, 177, 181 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 1 cut(s) | 49 |
| SsiI | CCGC | 1 cut(s) | 110 |
| SspMI | CTAG | 1 cut(s) | 80 |
| TasI | AATT | 1 cut(s) | 49 |
| TauI | GCSGC | 1 cut(s) | 113 |
| TfiI | GAWTC | 1 cut(s) | 19 |
| TseI | GCWGC | 1 cut(s) | 76 |
| TspDTI | ATGAA | 3 cut(s) | 11, 86, 159 |
| VneI | GTGCAC | 1 cut(s) | 34 |
| XspI | CTAG | 1 cut(s) | 80 |