Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

66974642 .. 66981674

Gene Structure 7033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAGATTTGCTCAAAGCAAGAGATAATAAATATAGTGACTGATGCCGCTAATGAAACCACAAAACTAGGCATGGAAGCAAGATATCATTGTTGCAAGGCTATCCATACGGCTTTTAACATGTCAAAAAAACTTTCAAGCGACCCAGCGCTTGGTGGGATTGCGGCAAAGGTTGGAACATTGCATAGGAATACTGGAGCACGCAGAAAGTCTCGATTGGCCAGACTAAAGAAGGCTGTAGAGATCCAAAAAGGCTGGTATACCCCGGCTGATTCTGAAGTTACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0008150 GO:0008540 GO:0009987 GO:0016043 GO:0022607 GO:0022624 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0065003 GO:0070682 GO:0071840 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Proteasom_PSMB

Protein Analysis

96

Amino Acids

10.5

Weight (kDa)

9.62

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	2 cut(s)	48, 164
AclWI	GGATC	1 cut(s)	238
AcoI	YGGCCR	1 cut(s)	219
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	138
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	2 cut(s)	48, 165
BlsI	GCNGC	2 cut(s)	49, 166
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	34
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	2 cut(s)	48, 164
BspANI	GGCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	243
BssNAI	GTATAC	1 cut(s)	261
Bst1107I	GTATAC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BstZ17I	GTATAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	151
CviAII	CATG	2 cut(s)	73, 121
CviJI	RGCY	6 cut(s)	101, 113, 221, 236, 255, 269
CviKI_1	RGCY	6 cut(s)	101, 113, 221, 236, 255, 269
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	86
Eco47III	AGCGCT	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	86
FaeI	CATG	2 cut(s)	76, 124
FaiI	YATR	6 cut(s)	35, 74, 108, 122, 186, 261
FatI	CATG	2 cut(s)	72, 120
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	48, 165
Fsp4HI	GCNGC	2 cut(s)	48, 165
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	48, 165
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	76, 124
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	96, 184
Hsp92II	CATG	2 cut(s)	76, 124
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	5 cut(s)	159, 180, 235, 241, 279
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	37, 280
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	266
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	2 cut(s)	76, 124
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	124
PciI	ACATGT	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	49, 166
PscI	ACATGT	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	48, 165
Sau3AI	GATC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	237
SsiI	CCGC	2 cut(s)	48, 164
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	1 cut(s)	214
TauI	GCSGC	2 cut(s)	50, 167
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.