Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000242.1

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

48603 .. 52786

Gene Structure 4184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000242.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgtcttcgctcgaatccaagactacccagaagctaaagaagaaggcctccacgttcctcttgcccccaatcgatgcctctagagagaaccccctcacggctcatcgattactcatggataatacgaataaagagatagaggaggttcagaggcagaggaagtccccgatctggtgtgtcagactgttagctcgacaacttccaatgcatggtcgataccttcaccacatttcgatggaagcgctatcaagtcgattatacgcaatggagcgagggctgaagattcctcagaacaagtgcactaagaccaccaattccctcctgatttcgctcatgaagcagctagaaaagcttgagcagaagcagaagtatgcgacattggaaagtagcagatataaggaaagttgtgaaagaaggaaggaaacctctcgctggccccctgctggtgatgatgatatttcaaccaatttctcctctactagtactgtaggctctccgagaaaaatcagagcagtgagagtagtatgtgtccgacaaagcagaagcaccagagttcctgagtcaatcacgatggcaaatgctccaaatctagagagtccacaacctccaccgcagactggatttccgagacaatccaaggcggatccttaccccacgtcaacctctacattggaacaaacggctgggcttggcggagagcttggcagttggaggttccactcgacccaaggccaccatgaggttgacgatgaagagacgaacgacaccggtgggcccccgtattgtcgccggacggagactgaaagaagaaagaaggtctcaccgaccttgttgccggtgaaggagaagacggggatggcgagctcggcggttatggttagggtttgggggatttcagggaattgggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

303

Amino Acids

34.22

Weight (kDa)

9.78

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	4 cut(s)	611, 641, 693, 869
AclWI	GGATC	2 cut(s)	638, 651
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	484
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	7 cut(s)	97, 171, 209, 432, 443, 617, 739
AgeI	ACCGGT	1 cut(s)	767
AgsI	TTSAA	1 cut(s)	462
AhlI	ACTAGT	1 cut(s)	479
AjiI	CACGTC	1 cut(s)	657
AluBI	AGCT	6 cut(s)	34, 191, 343, 352, 700, 864
AluI	AGCT	6 cut(s)	34, 191, 343, 352, 700, 864
Alw21I	GWGCWC	2 cut(s)	302, 866
Alw26I	GTCTC	4 cut(s)	622, 749, 791, 823
Alw44I	GTGCAC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	638, 651
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	4 cut(s)	45, 434, 730, 773
ApaI	GGGCCC	1 cut(s)	777
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	340
AsiGI	ACCGGT	1 cut(s)	767
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	435, 773, 774
AsuHPI	GGTGA	4 cut(s)	215, 458, 813, 850
BaeGI	GKGCMC	2 cut(s)	302, 777
BamHI	GGATCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	777, 866
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	2 cut(s)	302, 866
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	3 cut(s)	229, 565, 850
BceAI	ACGGC	2 cut(s)	114, 696
BcgI	CGANNNNNNTGC	2 cut(s)	814, 848
BcoDI	GTCTC	4 cut(s)	622, 749, 791, 823
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	4 cut(s)	81, 344, 480, 590
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	484
BmgBI	CACGTC	1 cut(s)	657
BmgT120I	GGNCC	3 cut(s)	435, 773, 774
BmiI	GGNNCC	5 cut(s)	437, 645, 716, 775, 776
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	2 cut(s)	72, 106
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	2 cut(s)	636, 727
BsaWI	WCCGGW	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	7 cut(s)	97, 171, 209, 432, 443, 617, 739
Bse118I	RCCGGY	2 cut(s)	767, 835
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	270
BseCI	ATCGAT	2 cut(s)	72, 106
BseDI	CCNNGG	2 cut(s)	636, 727
BseGI	GGATG	1 cut(s)	861
BseLI	CCNNNNNNNGG	7 cut(s)	97, 171, 209, 432, 443, 617, 739
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	302, 549
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	2 cut(s)	155, 463
BseSI	GKGCMC	2 cut(s)	302, 777
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	683
BshFI	GGCC	4 cut(s)	47, 436, 732, 775
BshTI	ACCGGT	1 cut(s)	767
BshVI	ATCGAT	2 cut(s)	72, 106
BsiHKAI	GWGCWC	2 cut(s)	302, 866
BsiSI	CCGG	3 cut(s)	768, 790, 836
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	7 cut(s)	97, 171, 209, 432, 443, 617, 739
BsmAI	GTCTC	4 cut(s)	622, 749, 791, 823
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	4 cut(s)	47, 436, 732, 775
Bso31I	GGTCTC	1 cut(s)	823
Bsp120I	GGGCCC	1 cut(s)	773
Bsp1286I	GDGCHC	3 cut(s)	302, 777, 866
Bsp143I	GATC	2 cut(s)	168, 643
BspACI	CCGC	4 cut(s)	611, 641, 693, 869
BspANI	GGCC	4 cut(s)	47, 436, 732, 775
BspCNI	CTCAG	2 cut(s)	301, 550
BspDI	ATCGAT	2 cut(s)	72, 106
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	5 cut(s)	437, 645, 716, 775, 776
BspPI	GGATC	2 cut(s)	638, 651
BspTNI	GGTCTC	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	2 cut(s)	767, 835
BsrI	ACTGG	1 cut(s)	622
BssAI	RCCGGY	2 cut(s)	767, 835
BssECI	CCNNGG	2 cut(s)	636, 727
BssMI	GATC	2 cut(s)	168, 643
BssT1I	CCWWGG	2 cut(s)	636, 727
Bst4CI	ACNGT	2 cut(s)	186, 487
Bst6I	CTCTTC	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	434, 862
BstDEI	CTNAG	3 cut(s)	288, 303, 558
BstF5I	GGATG	1 cut(s)	861
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	171, 646
BstMAI	GTCTC	4 cut(s)	622, 749, 791, 823
BstMBI	GATC	2 cut(s)	168, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	337, 349, 866
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	2 cut(s)	302, 777
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
Bsu15I	ATCGAT	2 cut(s)	72, 106
BsuRI	GGCC	4 cut(s)	47, 436, 732, 775
BsuTUI	ATCGAT	2 cut(s)	72, 106
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	861
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	434, 862
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	2 cut(s)	767, 835
Cfr13I	GGNCC	3 cut(s)	435, 773, 774
ClaI	ATCGAT	2 cut(s)	72, 106
Csp6I	GTAC	1 cut(s)	483
CspAI	ACCGGT	1 cut(s)	767
CviAII	CATG	4 cut(s)	115, 209, 334, 737
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	288, 303, 558
DpnI	GATC	2 cut(s)	170, 645
DpnII	GATC	2 cut(s)	168, 643
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
EciI	GGCGGA	2 cut(s)	656, 708
Ecl136II	GAGCTC	1 cut(s)	864
Eco130I	CCWWGG	2 cut(s)	636, 727
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	777, 866
Eco31I	GGTCTC	1 cut(s)	823
Eco47III	AGCGCT	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	636, 727
EcoT22I	ATGCAT	1 cut(s)	210
EcoT38I	GRGCYC	2 cut(s)	777, 866
ErhI	CCWWGG	2 cut(s)	636, 727
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	4 cut(s)	118, 212, 337, 740
FaiI	YATR	9 cut(s)	116, 210, 259, 335, 372, 396, 526, 738, 875
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	4 cut(s)	114, 208, 333, 736
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	868
FriOI	GRGCYC	2 cut(s)	777, 866
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	4 cut(s)	81, 344, 480, 590
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	4 cut(s)	47, 436, 732, 775
HapII	CCGG	3 cut(s)	768, 790, 836
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	118, 212, 337, 740
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	660, 745
HindII	GTYRAC	2 cut(s)	660, 745
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	4 cut(s)	14, 283, 560, 595
HpaII	CCGG	3 cut(s)	768, 790, 836
HphI	GGTGA	4 cut(s)	215, 458, 813, 850
Hpy166II	GTNNAC	4 cut(s)	300, 599, 660, 745
Hpy188I	TCNGA	8 cut(s)	150, 182, 291, 498, 509, 533, 627, 911
Hpy188III	TCNNGA	6 cut(s)	81, 322, 334, 557, 568, 590
Hpy8I	GTNNAC	4 cut(s)	300, 599, 660, 745
HpyAV	CCTTC	6 cut(s)	37, 230, 408, 412, 808, 835
HpyCH4III	ACNGT	2 cut(s)	186, 487
HpyCH4IV	ACGT	2 cut(s)	53, 656
HpyCH4V	TGCA	2 cut(s)	208, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	337, 349, 866
HpyF3I	CTNAG	3 cut(s)	288, 303, 558
HpySE526I	ACGT	2 cut(s)	53, 656
Hsp92II	CATG	4 cut(s)	118, 212, 337, 740
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	168, 643
LmnI	GCTCC	2 cut(s)	268, 586
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	4 cut(s)	81, 344, 480, 590
MaeII	ACGT	2 cut(s)	53, 656
MalI	GATC	2 cut(s)	170, 645
MboI	GATC	2 cut(s)	168, 643
MboII	GAAGA	5 cut(s)	52, 292, 764, 819, 859
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	3 cut(s)	302, 777, 866
MluCI	AATT	3 cut(s)	313, 466, 901
MlyI	GAGTC	2 cut(s)	569, 604
MmeI	TCCRAC	2 cut(s)	556, 689
Mph1103I	ATGCAT	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	3 cut(s)	768, 790, 836
MwoI	GCNNNNNNNGC	3 cut(s)	337, 349, 866
NdeII	GATC	2 cut(s)	168, 643
NlaIII	CATG	4 cut(s)	118, 212, 337, 740
NlaIV	GGNNCC	5 cut(s)	437, 645, 716, 775, 776
NmeAIII	GCCGAG	1 cut(s)	845
NsiI	ATGCAT	1 cut(s)	210
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	857
PfeI	GAWTC	2 cut(s)	14, 283
PflMI	CCANNNNNTGG	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	767
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	2 cut(s)	568, 603
PpsI	GAGTC	2 cut(s)	568, 603
Psp124BI	GAGCTC	1 cut(s)	866
PspFI	CCCAGC	1 cut(s)	683
PspN4I	GGNNCC	5 cut(s)	437, 645, 716, 775, 776
PspOMI	GGGCCC	1 cut(s)	773
PspPI	GGNCC	3 cut(s)	435, 773, 774
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	866
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	2 cut(s)	168, 643
Sau96I	GGNCC	3 cut(s)	435, 773, 774
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	2 cut(s)	569, 604
SduI	GDGCHC	3 cut(s)	302, 777, 866
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	767
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	3 cut(s)	313, 466, 901
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	611, 641, 693, 869
SspMI	CTAG	4 cut(s)	81, 344, 480, 590
SstI	GAGCTC	1 cut(s)	866
StuI	AGGCCT	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	636, 727
TaaI	ACNGT	2 cut(s)	186, 487
TaiI	ACGT	2 cut(s)	56, 659
TaqI	TCGA	8 cut(s)	12, 72, 106, 193, 214, 233, 253, 722
TasI	AATT	3 cut(s)	313, 466, 901
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	14, 283
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	350, 765
TspGWI	ACGGA	1 cut(s)	809
TspRI	CASTG	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	298
XbaI	TCTAGA	2 cut(s)	80, 589
XspI	CTAG	4 cut(s)	81, 344, 480, 590
ZrmI	AGTACT	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.