Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

67714517 .. 67721592

Gene Structure 7076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGGAGGAATTATTGCGGGGTTATAGAGTGCTGACTGGGTTGGCGGCTCGCCCATGGTGCCTCATGGAGATTTGCTCAAAGCAAGAGATAATAAATATAGTGACTGATGCCGCTAATGAAACCACAAAACTAGGCATGGAAGCAAGATATCATTGTTGCAAGGCTATCCATACGGCTTTTAACATGTCAAAAAAACTTTCAAGCGACCCAGCGCTTGGTGGGATTGCGGCAAAGGTTGGAACATTGCATAGGAATACTGGAGCACGCAGAAAGTCTCGATTGGCCAGACTAAAGAAGGCTGTAGAGATCCAAAAAGGCTGGTATACCCCGGCTGATTCTGAAGTTACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0008150 GO:0008540 GO:0009987 GO:0016043 GO:0022607 GO:0022624 GO:0032991 GO:0034622 GO:0043248 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0065003 GO:0070682 GO:0071840 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Proteasom_PSMB

Protein Analysis

118

Amino Acids

13.03

Weight (kDa)

9.61

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	4 cut(s)	19, 47, 114, 230
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	285
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	304
Aor51HI	AGCGCT	1 cut(s)	216
AoxI	GGCC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	3 cut(s)	48, 114, 231
BlsI	GCNGC	3 cut(s)	49, 115, 232
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	332
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	56, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	43, 265
Bse3DI	GCAATG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	56, 330
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	43, 265
BseYI	CCCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	4 cut(s)	19, 47, 114, 230
BspANI	GGCC	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	43, 265
BssECI	CCNNGG	2 cut(s)	56, 330
BssMI	GATC	1 cut(s)	309
BssNAI	GTATAC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	52, 268
BstDSI	CCRYGG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BstZ17I	GTATAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	52, 268
CfoI	GCGC	1 cut(s)	217
CviAII	CATG	4 cut(s)	57, 67, 139, 187
CviJI	RGCY	7 cut(s)	50, 167, 179, 287, 302, 321, 335
CviKI_1	RGCY	7 cut(s)	50, 167, 179, 287, 302, 321, 335
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	216
EcoRV	GATATC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	4 cut(s)	60, 70, 142, 190
FaiI	YATR	9 cut(s)	27, 58, 68, 101, 140, 174, 188, 252, 327
FatI	CATG	4 cut(s)	56, 66, 138, 186
FauI	CCCGC	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	48, 114, 231
Fsp4HI	GCNGC	3 cut(s)	48, 114, 231
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	3 cut(s)	48, 114, 231
GsaI	CCCAGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	4 cut(s)	60, 70, 142, 190
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	162, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	60, 70, 142, 190
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	24, 225, 246, 301, 307, 345
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	103, 346
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	4 cut(s)	60, 70, 142, 190
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	190
PciI	ACATGT	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	49, 115, 232
PscI	ACATGT	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	48, 114, 231
Sau3AI	GATC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	4 cut(s)	19, 47, 114, 230
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	56
TaqI	TCGA	1 cut(s)	280
TasI	AATT	1 cut(s)	11
TauI	GCSGC	3 cut(s)	50, 116, 233
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.