Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Forward (+)

49947689 .. 49951396

Gene Structure 3708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGCGAGGGTTGAAGATTCCTCAGAACAAGTGCCCCAAGACCACCAATTCCCTCCTGATTTCACTCATGAAACAGCTTGAAAAGCTTGAGCAGAAGCAGAAGTATGCGGCTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCACTCTGCAGATAGCATTGGAGGGCAGTTACAAGGAAGAATTTGTTCAAGGAATTTGACAACCATCAATGAAGACTTCATAAGAGACATGTTTTGGAACAACATGTGTATCAGCTTGGCCCCTATGAATGGGCAAAGTATGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

105

Amino Acids

11.84

Weight (kDa)

9.76

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	210, 223
AfiI	CCNNNNNNNGG	2 cut(s)	167, 299
AflIII	ACRYGT	2 cut(s)	258, 273
AgsI	TTSAA	3 cut(s)	16, 83, 219
AluBI	AGCT	4 cut(s)	79, 88, 140, 285
AluI	AGCT	4 cut(s)	79, 88, 140, 285
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	169, 288
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	210, 223
Asp700I	GAANNNNTTC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	289
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	262, 295
BalI	TGGCCA	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	2 cut(s)	111, 123
BlsI	GCNGC	2 cut(s)	112, 124
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	110
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 299
Bse21I	CCTNAGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	167, 299
BseMII	CTCAG	2 cut(s)	38, 176
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	2 cut(s)	171, 290
BslI	CCNNNNNNNGG	2 cut(s)	167, 299
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	171, 290
Bsp1286I	GDGCHC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	171, 290
BspCNI	CTCAG	2 cut(s)	37, 175
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	24, 162
BstMAI	GTCTC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 119
BstNSI	RCATGY	2 cut(s)	262, 277
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	171, 290
Cac8I	GCNNGC	1 cut(s)	169
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	3 cut(s)	70, 259, 274
CviJI	RGCY	8 cut(s)	79, 88, 113, 140, 167, 171, 285, 290
CviKI_1	RGCY	8 cut(s)	79, 88, 113, 140, 167, 171, 285, 290
DdeI	CTNAG	2 cut(s)	24, 162
EaeI	YGGCCR	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	73, 262, 277
FaiI	YATR	8 cut(s)	71, 108, 131, 251, 260, 275, 296, 311
FatI	CATG	3 cut(s)	69, 258, 273
Fnu4HI	GCNGC	2 cut(s)	111, 123
Fsp4HI	GCNGC	2 cut(s)	111, 123
GluI	GCNGC	2 cut(s)	111, 123
HaeIII	GGCC	2 cut(s)	171, 290
Hin1II	CATG	3 cut(s)	73, 262, 277
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	58, 70, 315
HpyAV	CCTTC	2 cut(s)	143, 147
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 119
HpyF3I	CTNAG	2 cut(s)	24, 162
Hsp92II	CATG	3 cut(s)	73, 262, 277
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	71, 149, 153
Lsp1109I	GCAGC	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	28, 219, 254
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	49, 210, 223
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	4 cut(s)	33, 65, 171, 185
Mox20I	TGGCCA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	85, 119
NlaIII	CATG	3 cut(s)	73, 262, 277
NlaIV	GGNNCC	1 cut(s)	291
NspI	RCATGY	2 cut(s)	262, 277
PagI	TCATGA	1 cut(s)	69
PciI	ACATGT	2 cut(s)	258, 273
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	112, 124
PscI	ACATGT	2 cut(s)	258, 273
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	181
SatI	GCNGC	2 cut(s)	111, 123
Sau96I	GGNCC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	5 cut(s)	81, 90, 142, 163, 287
SfcI	CTRYAG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	49, 210, 223
SsiI	CCGC	1 cut(s)	110
TasI	AATT	3 cut(s)	49, 210, 223
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	4 cut(s)	86, 238, 255, 311
XapI	RAATTY	2 cut(s)	210, 223
XceI	RCATGY	2 cut(s)	262, 277
XmnI	GAANNNNTTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.