Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Reverse (-)

92310164 .. 92312895

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG537200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGAGCGAGCAAGCGCTGATCCTCATCCACAAAGACGTCAAGGACTTTGAATTCTTCAGCTTCATCACCAGTCGATTATATGCAATGGAGCGAGGGTTGAAGATTCCTCAGAACAAGTGCACCAAGACCACCAATTCCCTCCTGATTTCACTCATGAAGCAGCTTGAAAAGCTTGAGCAGAAGCAGAAGTATGCGGTTTGGAAAGCAGCAGATATAAGGAAAGCTGTGAAAGAAGGAAGGAAACCTCAGGCTGGCCCCTCTGCAGGTGATGATGATCTTTCAGTTCCCTTGAGTACAACTAGTGGTTCATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

9.41

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	257
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	298
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	254, 266
AgsI	TTSAA	3 cut(s)	53, 103, 170
AhlI	ACTAGT	1 cut(s)	302
AluBI	AGCT	4 cut(s)	63, 166, 175, 227
AluI	AGCT	4 cut(s)	63, 166, 175, 227
Alw21I	GWGCWC	1 cut(s)	125
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	16
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	1 cut(s)	256
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	163, 209
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	61, 281
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	175, 221
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	164, 210
BlsI	GCNGC	2 cut(s)	165, 211
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	259
BpuEI	CTTGAG	2 cut(s)	197, 313
BsaBI	GATNNNNATC	2 cut(s)	26, 276
BsaHI	GRCGYC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 266
Bse1I	ACTGG	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	2 cut(s)	26, 276
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	2 cut(s)	26, 276
BseLI	CCNNNNNNNGG	2 cut(s)	254, 266
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	125, 263
BseNI	ACTGG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	175, 221
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	254, 266
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	21, 277
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	124, 262
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	21, 277
BssNI	GRCGYC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	7, 11, 15, 256
BstDEI	CTNAG	2 cut(s)	111, 249
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	24, 280
BstMBI	GATC	2 cut(s)	21, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	175, 221
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	4 cut(s)	7, 11, 15, 256
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	6 cut(s)	63, 166, 175, 227, 254, 258
CviKI_1	RGCY	6 cut(s)	63, 166, 175, 227, 254, 258
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	111, 249
DpnI	GATC	2 cut(s)	23, 279
DpnII	GATC	2 cut(s)	21, 277
Eco47III	AGCGCT	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	160
FaiI	YATR	7 cut(s)	82, 84, 158, 195, 218, 313, 315
FatI	CATG	1 cut(s)	156
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	164, 210
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	2 cut(s)	164, 210
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	164, 210
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	61, 281
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	145, 157
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	2 cut(s)	230, 234
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	86, 123, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	111, 249
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	21, 277
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	85, 158, 236, 240, 252
Lsp1109I	GCAGC	2 cut(s)	175, 221
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	39
MalI	GATC	2 cut(s)	23, 279
MboI	GATC	2 cut(s)	21, 277
MboII	GAAGA	2 cut(s)	49, 115
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	53, 136
MnlI	CCTC	6 cut(s)	35, 89, 120, 152, 258, 271
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	21, 277
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	165, 211
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SatI	GCNGC	2 cut(s)	164, 210
Sau3AI	GATC	2 cut(s)	21, 277
Sau96I	GGNCC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	42, 65, 168, 177, 229, 250, 271
SfcI	CTRYAG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	176, 292
SmoI	CTYRAG	2 cut(s)	176, 292
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	2 cut(s)	53, 136
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	76
TasI	AATT	2 cut(s)	53, 136
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	163, 209
TspDTI	ATGAA	3 cut(s)	55, 173, 300
VneI	GTGCAC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	53
XspI	CTAG	1 cut(s)	303
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.