Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001972

Physical Location & Seq

Genomic Coordinates Forward (+)

12597930 .. 12600257

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAGCAGCACTTCATTGCCTATCATCTTCATGCTTAGCCCTTCCTTCCAAATTCGGCAACCTTTCCCTCAATGGCCCTTCTACTTCCTCAGCTTCTTCCACTCACTTTCCTTCTCTCAGTTTCTCTGCTAACCTTTCTCACGACTTCTTCTCCAAAGGGTTTTTGAATTTGGGCCCAGTTCAGAGGTCAGTTCGTCGCTCTGTGGTTTGTGAGGCTGCTCCAACCAAGAAGCCTGACTCTGCTGAGAAGAGAGCTCGCCAGGCTGAGAAGAGGCGCATTTACAACAAGTCTAGAAAGTCTGAAATCAAAACCAGGATGAAGAAGGTTTTGGAAGCTTTAGACGTGCTCAAGAAGAAACCAGACGCTCAGGCTGAAGAAGTTCTTTCAATTGAGAAGCTTATTGGCGAAGCATACTCCATCATTGACAAAGCAGTGAAGGTTGGGACTTTGCATAGGAATACTGGAGCACGAAGAAAGTCTCGATTGGCCAGAAGAAAGAAGGCAGTAGAGATCCAAAAAGGCTGGTACACCCCAGCTGATTCTGAGGTTACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S20p

Protein Analysis

187

Amino Acids

20.47

Weight (kDa)

10.22

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S20p	PF01649	80 - 166	6.3e-22	Ribosomal protein S20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15190
fragaria_vesca	FvH4_3g19430
malus_domestica	MD03G1232600.v1.1 MD11G1253300.v1.1
prunus_persica	Prupe.4G176000_v2.0.a1
pyrus_communis	pycom03g17940 pycom11g22450
rosa_chinensis	RchiOBHm_Chr5g0032711
rosa_laevigata	RLG00000022904 RLG00000033418
rosa_multiflora	Rmu_sc0002292.1_g000007 Rmu_ssc0000242.1_g000013
rosa_roxburghii	Rroxscaffold_1G00047390 Rroxscaffold_1G00047850 Rroxscaffold_2G00126870
rosa_rugosa	Rorug01G0128400 Rorug04G0017100 Rorug05G0133200 Rorug05G0268300 Rorug05G0268400 Rorug05G0268500
rosa_samantha	Rh1DG018700 Rh1DG018800 Rh2AG155500 Rh2BG161800 Rh2BG417900 Rh2DG161100 Rh4CG241300 Rh4CG241400 Rh4DG279300 Rh5AG225700 Rh5AG312200 Rh5AG344000 Rh5AG482400 Rh5AG537200 Rh5BG226900 Rh5BG388200 Rh5BG503200 Rh5CG214800 Rh5CG254500 Rh5CG275300 Rh5CG360900 Rh5CG526500 Rh5DG231500
rosa_wichuraiana	Rw5G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	53, 169
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	169, 390
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	261, 314
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	5 cut(s)	95, 257, 338, 400, 539
AluI	AGCT	5 cut(s)	95, 257, 338, 400, 539
Alw21I	GWGCWC	3 cut(s)	259, 351, 472
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	3 cut(s)	76, 175, 489
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	5, 8, 218
ApoI	RAATTY	2 cut(s)	53, 169
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	77, 175, 176
BaeGI	GKGCMC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	179, 259
Bbv12I	GWGCWC	3 cut(s)	259, 351, 472
BbvCI	CCTCAGC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	17, 20, 205
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	2 cut(s)	263, 316
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	6, 9, 219
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	3 cut(s)	7, 10, 220
Bme1390I	CCNGG	2 cut(s)	263, 316
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	77, 175, 176
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	263, 316
BmrI	ACTGGG	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	2 cut(s)	91, 369
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	2 cut(s)	179, 469
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	263, 316
BseGI	GGATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	6 cut(s)	105, 133, 237, 258, 383, 537
BseNI	ACTGG	2 cut(s)	179, 469
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	17, 20, 205
BseYI	CCCAGC	1 cut(s)	535
BshFI	GGCC	3 cut(s)	78, 177, 491
BsiHKAI	GWGCWC	3 cut(s)	259, 351, 472
BslFI	GGGAC	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	78, 177, 491
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	4 cut(s)	179, 259, 351, 472
Bsp143I	GATC	1 cut(s)	513
Bsp1720I	GCTNAGC	1 cut(s)	37
BspANI	GGCC	3 cut(s)	78, 177, 491
BspCNI	CTCAG	6 cut(s)	104, 132, 238, 259, 382, 538
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	179, 469
BssMI	GATC	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	263, 316
Bst6I	CTCTTC	2 cut(s)	245, 266
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	7 cut(s)	37, 91, 119, 246, 267, 369, 546
BstF5I	GGATG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	1 cut(s)	516
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	513
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	263, 316
BstSCI	CCNGG	2 cut(s)	261, 314
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	17, 20, 205
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	78, 177, 491
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	77, 175, 176
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	7 cut(s)	37, 91, 119, 246, 267, 369, 546
DpnI	GATC	1 cut(s)	515
DpnII	GATC	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	245, 266
EarI	CTCTTC	2 cut(s)	245, 266
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	179, 259
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	261, 314
EcoT38I	GRGCYC	2 cut(s)	179, 259
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 415, 456
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	6, 9, 219
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	2 cut(s)	179, 259
Fsp4HI	GCNGC	3 cut(s)	6, 9, 219
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	3 cut(s)	6, 9, 219
GsaI	CCCAGC	1 cut(s)	539
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	78, 177, 491
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	2 cut(s)	336, 398
HinfI	GANTC	2 cut(s)	239, 542
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	3 cut(s)	186, 304, 547
Hpy188III	TCNNGA	4 cut(s)	143, 294, 352, 483
Hpy8I	GTNNAC	1 cut(s)	531
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	7 cut(s)	53, 57, 90, 123, 319, 433, 496
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	7 cut(s)	37, 91, 119, 246, 267, 369, 546
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	226, 467
Lsp1109I	GCAGC	3 cut(s)	17, 20, 205
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	515
MboI	GATC	1 cut(s)	513
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	4 cut(s)	179, 259, 351, 472
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	3 cut(s)	53, 169, 390
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	80, 100, 180, 208, 267, 541
Mox20I	TGGCCA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	31
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	263, 316
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	263, 316
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	513
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	7, 10, 220
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	261, 314
PspFI	CCCAGC	1 cut(s)	535
PspGI	CCWGG	2 cut(s)	261, 314
PspN4I	GGNNCC	1 cut(s)	177
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	3 cut(s)	77, 175, 176
PsuI	RGATCY	1 cut(s)	513
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	259
SatI	GCNGC	3 cut(s)	6, 9, 219
Sau3AI	GATC	1 cut(s)	513
Sau96I	GGNCC	3 cut(s)	77, 175, 176
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	263, 316
SduI	GDGCHC	4 cut(s)	179, 259, 351, 472
SmiMI	CAYNNNNRTG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	53, 169, 390
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	261, 314
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	484
TasI	AATT	3 cut(s)	53, 169, 390
TfiI	GAWTC	1 cut(s)	542
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	3 cut(s)	5, 8, 218
TspDTI	ATGAA	3 cut(s)	5, 21, 335
TspRI	CASTG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	53, 169
XbaI	TCTAGA	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.