Rorug04G0017100

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000579
Physical Location & Seq
Forward (+)
2581579 .. 2587088
5510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0017100.1

Sequence Viewer

Length: 474 bp
ATGAAGATACTAAAGGCTGATGTCGGAGCACTTGACAATTTTGAAGTGCTCGAATTCCTAAAATCTAAAGGGGCCTCAAAGAATGATCTATCACGGGTGGCAAGAGTTACACAATCGGAGTATAAGGTTTTCGATTATTTGGTTGATACTCCTGCTGGTACTCACACAAGAGAGAGTGTTGAAGAGTTCAAGGAGAAGTGTAGACAATATGACCTTGGGAATGATAAGATCCTCAATATTATTAACACTAGGCCAGCTTCAGTGGTTGAAATATATGCGATCGTGGAGGATAATGCTGATGAGCTAGTAGAGCTGGTTGCAGAGGTCTTGACTCCTCCAACCGTCGCATCCCCTAAACCTGAAGCCGATACTAATGACATTGATGCAGAGACCATTAACGTGGAACAAATTGAACAAAATGATGGCAATAAAGAAAAACCTGAATTTGGGGAAGCACCAATGGAGACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

4.38

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb4 PF03874 11 - 100 1.8e-10 RNA polymerase Rpb4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 202
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 2 cut(s) 53, 443
AcuI CTGAAG 2 cut(s) 243, 381
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 5 cut(s) 44, 182, 190, 269, 413
AhlI ACTAGT 1 cut(s) 467
AluBI AGCT 3 cut(s) 257, 304, 313
AluI AGCT 3 cut(s) 257, 304, 313
Alw21I GWGCWC 2 cut(s) 31, 51
Alw26I GTCTC 2 cut(s) 383, 458
AlwI GGATC 1 cut(s) 223
AoxI GGCC 2 cut(s) 72, 251
ApoI RAATTY 2 cut(s) 53, 443
AspS9I GGNCC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 31, 51
BccI CCATC 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 383, 458
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 3 cut(s) 249, 305, 468
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 73
BmsI GCATC 2 cut(s) 356, 373
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 74, 253
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 31, 51
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 383, 458
BsnI GGCC 2 cut(s) 74, 253
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 31, 51
Bsp143I GATC 3 cut(s) 85, 228, 279
BspANI GGCC 2 cut(s) 74, 253
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 85, 228, 279
BssT1I CCWWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 255
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 3 cut(s) 88, 231, 282
BstMAI GTCTC 2 cut(s) 383, 458
BstMBI GATC 3 cut(s) 85, 228, 279
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 2 cut(s) 74, 253
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 159
CviJI RGCY 7 cut(s) 17, 74, 253, 257, 304, 313, 365
CviKI_1 RGCY 7 cut(s) 17, 74, 253, 257, 304, 313, 365
CviQI GTAC 1 cut(s) 159
DpnI GATC 3 cut(s) 87, 230, 281
DpnII GATC 3 cut(s) 85, 228, 279
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 243, 381
EcoO109I RGGNCCY 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaiI YATR 4 cut(s) 123, 210, 274, 276
FblI GTMKAC 1 cut(s) 202
FokI GGATG 1 cut(s) 334
FspBI CTAG 3 cut(s) 249, 305, 468
HaeIII GGCC 2 cut(s) 74, 253
HinfI GANTC 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 26, 118
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 320, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 399
Kzo9I GATC 3 cut(s) 85, 228, 279
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 141, 165, 267, 299, 372, 453
LweI GCATC 2 cut(s) 356, 373
MaeI CTAG 3 cut(s) 249, 305, 468
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 87, 230, 281
MboI GATC 3 cut(s) 85, 228, 279
MboII GAAGA 2 cut(s) 16, 194
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 2 cut(s) 31, 51
MluCI AATT 4 cut(s) 37, 53, 408, 443
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 4, 362
MnlI CCTC 5 cut(s) 85, 242, 280, 316, 345
MseI TTAA 2 cut(s) 243, 396
MslI CAYNNNNRTG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 3 cut(s) 85, 228, 279
NlaIV GGNNCC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 282
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 228
PvuI CGATCG 1 cut(s) 282
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 243, 396
Sau3AI GATC 3 cut(s) 85, 228, 279
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 325
SduI GDGCHC 2 cut(s) 31, 51
SetI ASST 9 cut(s) 129, 216, 259, 306, 315, 327, 361, 402, 442
SfaNI GCATC 2 cut(s) 356, 373
SmiMI CAYNNNNRTG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 4 cut(s) 37, 53, 408, 443
SspI AATATT 1 cut(s) 238
SspMI CTAG 3 cut(s) 249, 305, 468
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 51, 132
TasI AATT 4 cut(s) 37, 53, 408, 443
Tru1I TTAA 2 cut(s) 243, 396
Tru9I TTAA 2 cut(s) 243, 396
TscAI CASTG 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 267
XapI RAATTY 2 cut(s) 53, 443
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 3 cut(s) 249, 305, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.