Prupe.7G064200_v2.0.a1

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000579
Physical Location & Seq
Forward (+)
10273464 .. 10276234
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G064200.1

Sequence Viewer

Length: 1188 bp
ATGAGCAAACTACTTGTATGCTTTTTGATATTTTGCAATGTAGCTCTGTCAAATAGTATTTGGTATGGCCAAACAACTTTTAATGTGCTTCAATTTGATGCTGTTGGAGACGGCCAAACTGATGATTCTGAAGCTTTCTTGAAAGCATGGGAAGCTTTATGTGGAGCAACTGAAGCTAATGATACAGGGACACCAACGCTTGTAGTACCAGCAGGGAAAACATTCCTTTTGCAACCTATAAAATTCTCGGGTCCTTGCAAATCCAACTCTGTCCATGTTCAGATTTTGGGGAAAATTGTGGCACCCAACACTCTACTTGCATGGAAAGAGTGTAAAGAATTCTGGATATCTTTTTCGGAGGTCACCAATCTCACCATTAATGGAACTGGAGAAATTGATGGCAATGAATGTGGAAAATTGTTGCAGGCTATACACTTCTACAAATGTGATTATCTTCAATTAAGGGGACTCAAACATCTTGACAGTCCAAAAGCACATATTACTATAAACAATTGCAACAATGTTAGTGTCTCCAACCTTCATATTATTGCACCTGAAGATAGCCCCAACACAGATGGAATTGACATCTCCATGTCAACCTTTGTCAATATCCGTAACTCCACAATTGGAACTGGTGATGATTGTATTGCTCTTAATAATGGCTCATCACATATCAATATCACCAGCATTGTCTGCGGACCAGGTCATGGAATTAGTGTGGGAAGCTTAGGTGAAGATGGAGCTTATGAGACGGCAGAAGAGGTTCATGTGCGAAACTGTACTTTCAATGGTACAAAGAACGGAGCTAGAATTAAGACATGGCAGGGCGGTTCTGGATATGTCAAAGGGATATCATTTGAGAATATCACACTAATAGGAGCTAAAAACCCTATTATCATCGACCAATATTACTGTGATAAAAATGGACACAATTGCAAACCTTCAGCTTCGGCAGTAAATGTAAGTAATGTGATTTACAGAGGGTTTCAAGGAACTTATGCAAATGAGGAGGAAGCGATTATATTTGATTGCTCCAACACTCCAGGTTGTCAAAACGTAACCATGAACCAAATCAACATCACCTCCACACTTGATCCTGGAAAGAACATTTCTGCCGCTTGCAAGAATGTAAATGGAACTTTTGACCCTGCTGTCCCTTGCTCACTATGGGCCTATCTGCACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

396

Amino Acids

42.52

Weight (kDa)

5.34

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1151
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 707
AciI CCGC 3 cut(s) 696, 828, 1116
AclWI GGATC 1 cut(s) 1088
AcoI YGGCCR 2 cut(s) 67, 112
AcsI RAATTY 2 cut(s) 242, 338
AcuI CTGAAG 4 cut(s) 150, 192, 576, 927
AfaI GTAC 3 cut(s) 207, 781, 793
AfiI CCNNNNNNNGG 1 cut(s) 707
AgsI TTSAA 5 cut(s) 92, 142, 458, 787, 989
AjnI CCWGG 3 cut(s) 700, 1042, 1096
AluBI AGCT 9 cut(s) 44, 134, 155, 176, 726, 743, 806, 881, 947
AluI AGCT 9 cut(s) 44, 134, 155, 176, 726, 743, 806, 881, 947
Alw26I GTCTC 3 cut(s) 102, 535, 743
AlwI GGATC 1 cut(s) 1088
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 3 cut(s) 67, 112, 1170
ApoI RAATTY 2 cut(s) 242, 338
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 2 cut(s) 221, 762
AspS9I GGNCC 3 cut(s) 251, 698, 1170
AsuHPI GGTGA 6 cut(s) 355, 364, 647, 673, 743, 1072
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 2 cut(s) 251, 698
BalI TGGCCA 1 cut(s) 69
BanI GGYRCC 1 cut(s) 301
BccI CCATC 3 cut(s) 392, 569, 731
BceAI ACGGC 2 cut(s) 127, 768
BciT130I CCWGG 3 cut(s) 702, 1044, 1098
BcoDI GTCTC 3 cut(s) 102, 535, 743
BfaI CTAG 1 cut(s) 807
BisI GCNGC 1 cut(s) 1116
BlsI GCNGC 1 cut(s) 1117
Bme1390I CCNGG 3 cut(s) 702, 1044, 1098
Bme18I GGWCC 2 cut(s) 251, 698
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 251, 698, 1170
BmiI GGNNCC 2 cut(s) 252, 303
BmrFI CCNGG 3 cut(s) 702, 1044, 1098
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 2 cut(s) 408, 1026
Bpu10I CCTNAGC 1 cut(s) 727
BsaXI ACNNNNNCTCC 2 cut(s) 1067, 1097
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 391, 637
Bse3DI GCAATG 2 cut(s) 43, 409
BseBI CCWGG 3 cut(s) 702, 1044, 1098
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMI GCAATG 2 cut(s) 43, 409
BseNI ACTGG 2 cut(s) 391, 637
BseRI GAGGAG 1 cut(s) 1022
BsgI GTGCAG 1 cut(s) 1163
BshFI GGCC 3 cut(s) 69, 114, 1172
BshNI GGYRCC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 247
BslFI GGGAC 3 cut(s) 202, 480, 1139
BslI CCNNNNNNNGG 1 cut(s) 707
BsmAI GTCTC 3 cut(s) 102, 535, 743
BsmBI CGTCTC 2 cut(s) 102, 743
BsmFI GGGAC 3 cut(s) 202, 480, 1139
BsnI GGCC 3 cut(s) 69, 114, 1172
BsoBI CYCGRG 1 cut(s) 247
Bsp143I GATC 1 cut(s) 1093
BspACI CCGC 3 cut(s) 696, 828, 1116
BspANI GGCC 3 cut(s) 69, 114, 1172
BspLI GGNNCC 2 cut(s) 252, 303
BspPI GGATC 1 cut(s) 1088
BspT107I GGYRCC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 43, 409
BsrI ACTGG 2 cut(s) 391, 637
BssMI GATC 1 cut(s) 1093
Bst2UI CCWGG 3 cut(s) 702, 1044, 1098
Bst4CI ACNGT 3 cut(s) 485, 779, 914
Bst6I CTCTTC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 426, 1120
BstDEI CTNAG 1 cut(s) 727
BstEII GGTNACC 1 cut(s) 361
BstKTI GATC 1 cut(s) 1096
BstMAI GTCTC 3 cut(s) 102, 535, 743
BstMBI GATC 1 cut(s) 1093
BstMWI GCNNNNNNNGC 3 cut(s) 152, 173, 693
BstNI CCWGG 3 cut(s) 702, 1044, 1098
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 3 cut(s) 700, 1042, 1096
BsuRI GGCC 3 cut(s) 69, 114, 1172
Cac8I GCNNGC 2 cut(s) 426, 1120
Cfr13I GGNCC 3 cut(s) 251, 698, 1170
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 3 cut(s) 206, 780, 792
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 8 cut(s) 147, 275, 321, 592, 707, 767, 819, 1063
CviQI GTAC 3 cut(s) 206, 780, 792
DdeI CTNAG 1 cut(s) 727
DpnI GATC 1 cut(s) 1095
DpnII GATC 1 cut(s) 1093
DrdI GACNNNNNNGTC 1 cut(s) 1151
DseDI GACNNNNNNGTC 1 cut(s) 1151
EaeI YGGCCR 2 cut(s) 67, 112
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco32I GATATC 2 cut(s) 348, 852
Eco47I GGWCC 2 cut(s) 251, 698
Eco57I CTGAAG 4 cut(s) 150, 192, 576, 927
Eco88I CYCGRG 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 3 cut(s) 700, 1042, 1096
EcoRV GATATC 2 cut(s) 348, 852
Esp3I CGTCTC 2 cut(s) 102, 743
FaeI CATG 8 cut(s) 150, 278, 324, 595, 710, 770, 822, 1066
FaqI GGGAC 3 cut(s) 202, 480, 1139
FatI CATG 8 cut(s) 146, 274, 320, 591, 706, 766, 818, 1062
Fnu4HI GCNGC 1 cut(s) 1116
Fsp4HI GCNGC 1 cut(s) 1116
FspBI CTAG 1 cut(s) 807
GluI GCNGC 1 cut(s) 1116
GsuI CTGGAG 2 cut(s) 408, 1026
HaeIII GGCC 3 cut(s) 69, 114, 1172
Hin1II CATG 8 cut(s) 150, 278, 324, 595, 710, 770, 822, 1066
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 3 cut(s) 132, 153, 724
HinfI GANTC 2 cut(s) 125, 468
HphI GGTGA 6 cut(s) 355, 364, 647, 673, 743, 1072
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 3 cut(s) 130, 282, 358
Hpy188III TCNNGA 4 cut(s) 139, 343, 479, 834
Hpy8I GTNNAC 1 cut(s) 597
HpyAV CCTTC 2 cut(s) 548, 951
HpyCH4III ACNGT 3 cut(s) 485, 779, 914
HpyCH4IV ACGT 1 cut(s) 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 173, 693
HpyF3I CTNAG 1 cut(s) 727
HpySE526I ACGT 1 cut(s) 1056
Hsp92II CATG 8 cut(s) 150, 278, 324, 595, 710, 770, 822, 1066
Kzo9I GATC 1 cut(s) 1093
LmnI GCTCC 5 cut(s) 164, 740, 803, 878, 1037
LweI GCATC 1 cut(s) 88
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 1 cut(s) 807
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 3 cut(s) 361, 614, 1057
MalI GATC 1 cut(s) 1095
MboI GATC 1 cut(s) 1093
MboII GAAGA 4 cut(s) 446, 569, 746, 770
MfeI CAATTG 3 cut(s) 511, 624, 931
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 4 cut(s) 85, 288, 558, 1059
MnlI CCTC 6 cut(s) 352, 754, 974, 1000, 1003, 1093
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 2 cut(s) 221, 762
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 81, 378, 461, 654, 813
MslI CAYNNNNRTG 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 69
MspR9I CCNGG 3 cut(s) 702, 1044, 1098
MunI CAATTG 3 cut(s) 511, 624, 931
MvaI CCWGG 3 cut(s) 702, 1044, 1098
MwoI GCNNNNNNNGC 3 cut(s) 152, 173, 693
NdeII GATC 1 cut(s) 1093
NlaIII CATG 8 cut(s) 150, 278, 324, 595, 710, 770, 822, 1066
NlaIV GGNNCC 2 cut(s) 252, 303
NmuCI GTSAC 1 cut(s) 361
PdmI GAANNNNTTC 2 cut(s) 221, 762
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 702
PflMI CCANNNNNTGG 1 cut(s) 707
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 1 cut(s) 1117
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PpuMI RGGWCCY 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 3 cut(s) 700, 1042, 1096
PspEI GGTNACC 1 cut(s) 361
PspGI CCWGG 3 cut(s) 700, 1042, 1096
PspN4I GGNNCC 2 cut(s) 252, 303
PspPI GGNCC 3 cut(s) 251, 698, 1170
PspPPI RGGWCCY 1 cut(s) 251
PsyI GACNNNGTC 1 cut(s) 702
RsaI GTAC 3 cut(s) 207, 781, 793
RsaNI GTAC 3 cut(s) 206, 780, 792
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 5 cut(s) 81, 378, 461, 654, 813
SatI GCNGC 1 cut(s) 1116
Sau3AI GATC 1 cut(s) 1093
Sau96I GGNCC 3 cut(s) 251, 698, 1170
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 3 cut(s) 702, 1044, 1098
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 2 cut(s) 251, 698
SmiMI CAYNNNNRTG 1 cut(s) 590
SsiI CCGC 3 cut(s) 696, 828, 1116
SspI AATATT 1 cut(s) 908
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 3 cut(s) 700, 1042, 1096
TaaI ACNGT 3 cut(s) 485, 779, 914
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 1 cut(s) 900
TatI WGTACW 1 cut(s) 779
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 5 cut(s) 81, 378, 461, 654, 813
Tru9I TTAA 5 cut(s) 81, 378, 461, 654, 813
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 4 cut(s) 420, 530, 755, 1079
TspGWI ACGGA 2 cut(s) 602, 816
Tth111I GACNNNGTC 1 cut(s) 702
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 2 cut(s) 251, 698
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 2 cut(s) 242, 338
XmnI GAANNNNTTC 2 cut(s) 221, 762
XspI CTAG 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.