AT4G32370

Polygalacturonase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000579
Physical Location & Seq
Forward (+)
15625558 .. 15627517
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32370.1

Sequence Viewer

Length: 1029 bp
ATGTTCAATTTTTTTTTTACTATGAAGGATTTTAAAACATTGTTCTCATTGATTATAGTTATATCATACTATTTCGAATATGGAGAAGGCCAAAGAATTCTAAGCATCAAGGATTTTATTATTGATACTAATCACACCATCATTGATTATTCTCAAGCATTTCAAGAAGCATGGAAAGGATTATGCGAAGATGAAACACCCAACGGCTCAGCTTTAGTGATACGAAAGAACGAAACATATACTTTACAACCATCAACTTTTCGAGGTCCATGCGTATCTTCTAACATTCATATTCAGATTGATGGAAAACTCGAAGGGCCAAGGAAGCCGATATATTGGAAAAACAAAGAAAACAGGAGTTGGTTAGGTTTCAAGGATGTAGAAGGTCTCGTCATCAACGGCTCAGGAGTTCTTAATCCTCATGGGGAAGCTTGGTGGAAATCTGTTAGTCTCTCTAAACGACCAACAACAATTAGTTTTGCGTCATGCATGGACATTGTATATAATGGACTACATCACATAAATAGTCCAAGAAATCACATTTCAATTTATGGTTGCACCAATGCAACTTTATCAAATCTTGATATAAGCGCACCCGAAGACAGTCCAAACACGGATGGCATCAACATTTGTCTTTCACACAGAATCCAAATCTTAGACTCCTCTATTCAAACTGGTGATGATTGTGTTGCAATTACTGGTGGAAGGGGTGGTTCTTCAGATATCAACATTACTGGTGTAGCATGTGGTCCGGGTCACGGTATCAGTATTGGGAGTTTGGGGAAAGATAATGAGAGAGATGACATAGTCGAAAACGTGAACGTAAGAAGCTGTAGTTTTACAGGAACTCAAAATGGAGCAAGAATCAAGACTTGGAATGGAGGACGAGGGTTGGCCAAAAATATTTTGTATGAAAATATTACATTGATAGATGCTGGATACCCCATCATCATCAATCAACACTATTTTGACAACAAAAAAAAACACTATTTTGACAAGAGTTTCCTCAAGGTAATTTTCAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

342

Amino Acids

38.13

Weight (kDa)

6.79

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 71 - 327 2.2e-65 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 702
AfiI CCNNNNNNNGG 1 cut(s) 758
AgsI TTSAA 6 cut(s) 7, 164, 373, 546, 671, 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 856, 888
AluBI AGCT 3 cut(s) 212, 431, 831
AluI AGCT 3 cut(s) 212, 431, 831
Alw26I GTCTC 2 cut(s) 392, 455
AoxI GGCC 3 cut(s) 88, 317, 894
ApoI RAATTY 1 cut(s) 96
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 3 cut(s) 266, 317, 749
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 1 cut(s) 689
AsuII TTCGAA 1 cut(s) 75
AvaII GGWCC 2 cut(s) 266, 749
BalI TGGCCA 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 606
BccI CCATC 5 cut(s) 146, 259, 296, 611, 953
BceAI ACGGC 2 cut(s) 220, 415
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciVI GTATCC 1 cut(s) 932
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 2 cut(s) 392, 455
BfmI CTRYAG 1 cut(s) 832
BfuI GTATCC 1 cut(s) 932
BlpI GCTNAGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 2 cut(s) 266, 749
BmgT120I GGNCC 3 cut(s) 266, 317, 749
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 3 cut(s) 114, 630, 922
BpiI GAAGAC 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 403
Bpu1102I GCTNAGC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 138, 992
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 3 cut(s) 679, 703, 739
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 382, 622
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 2 cut(s) 222, 417
BseNI ACTGG 3 cut(s) 679, 703, 739
BseRI GAGGAG 1 cut(s) 652
BshFI GGCC 3 cut(s) 90, 319, 896
BsiSI CCGG 1 cut(s) 752
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 392, 455
BsnI GGCC 3 cut(s) 90, 319, 896
Bso31I GGTCTC 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 75
Bsp1720I GCTNAGC 1 cut(s) 208
BspANI GGCC 3 cut(s) 90, 319, 896
BspCNI CTCAG 2 cut(s) 221, 416
BspT104I TTCGAA 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 392
BsrI ACTGG 3 cut(s) 679, 703, 739
BssECI CCNNGG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 605, 761, 1026
BstBI TTCGAA 1 cut(s) 75
BstDEI CTNAG 4 cut(s) 101, 208, 403, 655
BstF5I GGATG 2 cut(s) 382, 622
BstHHI GCGC 1 cut(s) 593
BstMAI GTCTC 2 cut(s) 392, 455
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 751
BstSFI CTRYAG 1 cut(s) 832
BstV2I GAAGAC 1 cut(s) 606
BsuI GTATCC 1 cut(s) 932
BsuRI GGCC 3 cut(s) 90, 319, 896
BtsCI GGATG 2 cut(s) 382, 622
CfoI GCGC 1 cut(s) 593
Cfr13I GGNCC 3 cut(s) 266, 317, 749
CseI GACGC 1 cut(s) 471
CviAII CATG 6 cut(s) 171, 270, 422, 486, 490, 744
CviJI RGCY 9 cut(s) 90, 207, 212, 319, 328, 402, 431, 831, 896
CviKI_1 RGCY 9 cut(s) 90, 207, 212, 319, 328, 402, 431, 831, 896
DdeI CTNAG 4 cut(s) 101, 208, 403, 655
DraI TTTAAA 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 392
Eco32I GATATC 1 cut(s) 724
Eco47I GGWCC 2 cut(s) 266, 749
Eco57I CTGAAG 1 cut(s) 702
EcoRI GAATTC 1 cut(s) 96
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 6 cut(s) 174, 273, 425, 489, 493, 747
FatI CATG 6 cut(s) 170, 269, 421, 485, 489, 743
FokI GGATG 2 cut(s) 389, 629
GlaI GCGC 1 cut(s) 592
HaeIII GGCC 3 cut(s) 90, 319, 896
HapII CCGG 1 cut(s) 752
HgaI GACGC 1 cut(s) 471
HhaI GCGC 1 cut(s) 593
Hin1II CATG 6 cut(s) 174, 273, 425, 489, 493, 747
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 3 cut(s) 645, 659, 864
HpaII CCGG 1 cut(s) 752
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 1 cut(s) 820
Hpy188I TCNGA 2 cut(s) 297, 721
Hpy188III TCNNGA 4 cut(s) 164, 405, 581, 868
Hpy8I GTNNAC 1 cut(s) 820
HpyAV CCTTC 5 cut(s) 19, 80, 308, 377, 699
HpyCH4III ACNGT 3 cut(s) 605, 761, 1026
HpyCH4IV ACGT 2 cut(s) 816, 822
HpyCH4V TGCA 4 cut(s) 489, 558, 566, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 4 cut(s) 101, 208, 403, 655
HpySE526I ACGT 2 cut(s) 816, 822
Hsp92II CATG 6 cut(s) 174, 273, 425, 489, 493, 747
HspAI GCGC 1 cut(s) 591
LmnI GCTCC 1 cut(s) 857
LpnPI CCDG 8 cut(s) 340, 390, 660, 684, 720, 765, 828, 921
LweI GCATC 3 cut(s) 114, 630, 922
MaeII ACGT 2 cut(s) 816, 822
MaeIII GTNAC 1 cut(s) 755
MboII GAAGA 4 cut(s) 200, 270, 611, 708
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 6 cut(s) 7, 96, 471, 546, 693, 1014
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 1 cut(s) 653
MnlI CCTC 6 cut(s) 257, 429, 673, 875, 881, 1016
Mox20I TGGCCA 1 cut(s) 896
Mph1103I ATGCAT 1 cut(s) 491
MscI TGGCCA 1 cut(s) 896
MseI TTAA 2 cut(s) 33, 414
Msp20I TGGCCA 1 cut(s) 896
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 753
MwoI GCNNNNNNNGC 1 cut(s) 325
NciI CCSGG 1 cut(s) 753
NlaIII CATG 6 cut(s) 174, 273, 425, 489, 493, 747
NmuCI GTSAC 1 cut(s) 755
NsiI ATGCAT 1 cut(s) 491
NspI RCATGY 1 cut(s) 747
NspV TTCGAA 1 cut(s) 75
PfeI GAWTC 2 cut(s) 645, 864
PflFI GACNNNGTC 1 cut(s) 806
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
PspPI GGNCC 3 cut(s) 266, 317, 749
PsyI GACNNNGTC 1 cut(s) 806
SaqAI TTAA 2 cut(s) 33, 414
Sau96I GGNCC 3 cut(s) 266, 317, 749
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 1 cut(s) 753
SetI ASST 9 cut(s) 214, 268, 370, 388, 433, 819, 825, 833, 1014
SfaNI GCATC 3 cut(s) 114, 630, 922
SfcI CTRYAG 1 cut(s) 832
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 2 cut(s) 266, 749
SmlI CTYRAG 2 cut(s) 153, 1007
SmoI CTYRAG 2 cut(s) 153, 1007
Sse9I AATT 6 cut(s) 7, 96, 471, 546, 693, 1014
SspI AATATT 2 cut(s) 904, 919
StyD4I CCNGG 1 cut(s) 751
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 3 cut(s) 605, 761, 1026
TaiI ACGT 2 cut(s) 819, 825
TaqI TCGA 4 cut(s) 75, 262, 312, 810
TasI AATT 6 cut(s) 7, 96, 471, 546, 693, 1014
TfiI GAWTC 2 cut(s) 645, 864
Tru1I TTAA 2 cut(s) 33, 414
Tru9I TTAA 2 cut(s) 33, 414
TseFI GTSAC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 4 cut(s) 38, 207, 278, 927
TspGWI ACGGA 1 cut(s) 629
Tth111I GACNNNGTC 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 266, 749
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 747
Zsp2I ATGCAT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.