Polygalacturonase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_28 | PF00295 | 65 - 390 | 6.2e-84 | Glycosyl hydrolases family 28 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 458 |
| AarI | CACCTGC | 1 cut(s) | 598 |
| AatII | GACGTC | 1 cut(s) | 992 |
| Acc36I | ACCTGC | 2 cut(s) | 598, 1184 |
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 743 |
| AclWI | GGATC | 1 cut(s) | 874 |
| AcoI | YGGCCR | 1 cut(s) | 403 |
| AcsI | RAATTY | 2 cut(s) | 239, 1110 |
| AcuI | CTGAAG | 1 cut(s) | 153 |
| AcyI | GRCGYC | 1 cut(s) | 989 |
| AfaI | GTAC | 4 cut(s) | 68, 189, 829, 1189 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 277, 743 |
| AgsI | TTSAA | 3 cut(s) | 245, 823, 1031 |
| AhlI | ACTAGT | 1 cut(s) | 196 |
| AjnI | CCWGG | 4 cut(s) | 282, 344, 405, 736 |
| AleI | CACNNNNGTG | 1 cut(s) | 418 |
| Alw21I | GWGCWC | 1 cut(s) | 781 |
| Alw26I | GTCTC | 1 cut(s) | 571 |
| AlwI | GGATC | 1 cut(s) | 874 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 283 |
| AoxI | GGCC | 4 cut(s) | 247, 257, 403, 739 |
| ApeKI | GCWGC | 4 cut(s) | 229, 914, 972, 1158 |
| ApoI | RAATTY | 2 cut(s) | 239, 1110 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1110 |
| AspS9I | GGNCC | 5 cut(s) | 7, 248, 268, 280, 734 |
| AsuHPI | GGTGA | 5 cut(s) | 194, 405, 683, 1024, 1111 |
| AvaII | GGWCC | 4 cut(s) | 7, 268, 280, 734 |
| AxyI | CCTNAGG | 1 cut(s) | 207 |
| BaeGI | GKGCMC | 2 cut(s) | 332, 1197 |
| BalI | TGGCCA | 1 cut(s) | 405 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BanII | GRGCYC | 1 cut(s) | 781 |
| BbsI | GAAGAC | 1 cut(s) | 693 |
| Bbv12I | GWGCWC | 1 cut(s) | 781 |
| BbvI | GCAGC | 4 cut(s) | 241, 926, 959, 1170 |
| BccI | CCATC | 5 cut(s) | 107, 340, 377, 579, 605 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 541, 575 |
| BciT130I | CCWGG | 4 cut(s) | 284, 346, 407, 738 |
| BcoDI | GTCTC | 1 cut(s) | 571 |
| BcuI | ACTAGT | 1 cut(s) | 196 |
| BfaI | CTAG | 2 cut(s) | 197, 1134 |
| BfmI | CTRYAG | 1 cut(s) | 227 |
| BfuAI | ACCTGC | 2 cut(s) | 598, 1184 |
| BisI | GCNGC | 4 cut(s) | 230, 915, 973, 1159 |
| BlsI | GCNGC | 4 cut(s) | 231, 916, 974, 1160 |
| BmcAI | AGTACT | 1 cut(s) | 1189 |
| Bme1390I | CCNGG | 4 cut(s) | 284, 346, 407, 738 |
| Bme18I | GGWCC | 4 cut(s) | 7, 268, 280, 734 |
| BmgT120I | GGNCC | 5 cut(s) | 7, 248, 268, 280, 734 |
| BmiI | GGNNCC | 4 cut(s) | 269, 300, 350, 1174 |
| BmrFI | CCNGG | 4 cut(s) | 284, 346, 407, 738 |
| BmsI | GCATC | 3 cut(s) | 304, 561, 943 |
| BpiI | GAAGAC | 1 cut(s) | 693 |
| Bpu10I | CCTNAGC | 1 cut(s) | 763 |
| BsaAI | YACGTR | 1 cut(s) | 805 |
| BsaBI | GATNNNNATC | 1 cut(s) | 981 |
| BsaHI | GRCGYC | 1 cut(s) | 989 |
| BsaJI | CCNNGG | 4 cut(s) | 283, 406, 416, 742 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 277, 743 |
| Bse1I | ACTGG | 2 cut(s) | 384, 673 |
| Bse21I | CCTNAGG | 1 cut(s) | 207 |
| Bse3DI | GCAATG | 4 cut(s) | 432, 723, 1020, 1186 |
| Bse8I | GATNNNNATC | 1 cut(s) | 981 |
| BseBI | CCWGG | 4 cut(s) | 284, 346, 407, 738 |
| BseDI | CCNNGG | 4 cut(s) | 283, 406, 416, 742 |
| BseGI | GGATG | 3 cut(s) | 118, 319, 388 |
| BseJI | GATNNNNATC | 1 cut(s) | 981 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 277, 743 |
| BseMI | GCAATG | 4 cut(s) | 432, 723, 1020, 1186 |
| BseNI | ACTGG | 2 cut(s) | 384, 673 |
| BseRI | GAGGAG | 1 cut(s) | 1064 |
| BseSI | GKGCMC | 2 cut(s) | 332, 1197 |
| BseXI | GCAGC | 4 cut(s) | 241, 926, 959, 1170 |
| BshFI | GGCC | 4 cut(s) | 249, 259, 405, 741 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiHKAI | GWGCWC | 1 cut(s) | 781 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 277, 743 |
| BsmAI | GTCTC | 1 cut(s) | 571 |
| BsnI | GGCC | 4 cut(s) | 249, 259, 405, 741 |
| Bsp1286I | GDGCHC | 3 cut(s) | 332, 781, 1197 |
| Bsp143I | GATC | 3 cut(s) | 866, 900, 1056 |
| Bsp19I | CCATGG | 1 cut(s) | 742 |
| BspANI | GGCC | 4 cut(s) | 249, 259, 405, 741 |
| BspHI | TCATGA | 2 cut(s) | 649, 781 |
| BspLI | GGNNCC | 4 cut(s) | 269, 300, 350, 1174 |
| BspMAI | CTGCAG | 1 cut(s) | 231 |
| BspMI | ACCTGC | 2 cut(s) | 598, 1184 |
| BspPI | GGATC | 1 cut(s) | 874 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 4 cut(s) | 432, 723, 1020, 1186 |
| BsrI | ACTGG | 2 cut(s) | 384, 673 |
| BssECI | CCNNGG | 4 cut(s) | 283, 406, 416, 742 |
| BssMI | GATC | 3 cut(s) | 866, 900, 1056 |
| BssNI | GRCGYC | 1 cut(s) | 989 |
| BssT1I | CCWWGG | 2 cut(s) | 416, 742 |
| Bst2UI | CCWGG | 4 cut(s) | 284, 346, 407, 738 |
| Bst4CI | ACNGT | 7 cut(s) | 71, 310, 680, 790, 1003, 1187, 1192 |
| BstACI | GRCGYC | 1 cut(s) | 989 |
| BstBAI | YACGTR | 1 cut(s) | 805 |
| BstC8I | GCNNGC | 1 cut(s) | 257 |
| BstDEI | CTNAG | 4 cut(s) | 207, 261, 763, 879 |
| BstDSI | CCRYGG | 1 cut(s) | 742 |
| BstF5I | GGATG | 3 cut(s) | 118, 319, 388 |
| BstKTI | GATC | 3 cut(s) | 869, 903, 1059 |
| BstMAI | GTCTC | 1 cut(s) | 571 |
| BstMBI | GATC | 3 cut(s) | 866, 900, 1056 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 155 |
| BstNI | CCWGG | 4 cut(s) | 284, 346, 407, 738 |
| BstSCI | CCNGG | 4 cut(s) | 282, 344, 405, 736 |
| BstSFI | CTRYAG | 1 cut(s) | 227 |
| BstSLI | GKGCMC | 2 cut(s) | 332, 1197 |
| BstV1I | GCAGC | 4 cut(s) | 241, 926, 959, 1170 |
| BstV2I | GAAGAC | 1 cut(s) | 693 |
| BstX2I | RGATCY | 1 cut(s) | 866 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 310, 1082 |
| BstYI | RGATCY | 1 cut(s) | 866 |
| Bsu36I | CCTNAGG | 1 cut(s) | 207 |
| BsuRI | GGCC | 4 cut(s) | 249, 259, 405, 741 |
| BtgI | CCRYGG | 1 cut(s) | 742 |
| BtsCI | GGATG | 3 cut(s) | 118, 319, 388 |
| BtsI | GCAGTG | 1 cut(s) | 547 |
| BtsIMutI | CAGTG | 2 cut(s) | 76, 547 |
| BveI | ACCTGC | 2 cut(s) | 598, 1184 |
| Cac8I | GCNNGC | 1 cut(s) | 257 |
| CaiI | CAGNNNCTG | 1 cut(s) | 283 |
| CciI | TCATGA | 2 cut(s) | 649, 781 |
| Cfr13I | GGNCC | 5 cut(s) | 7, 248, 268, 280, 734 |
| Csp6I | GTAC | 4 cut(s) | 67, 188, 828, 1188 |
| CviAII | CATG | 9 cut(s) | 150, 318, 512, 650, 743, 782, 855, 1082, 1163 |
| CviQI | GTAC | 4 cut(s) | 67, 188, 828, 1188 |
| DdeI | CTNAG | 4 cut(s) | 207, 261, 763, 879 |
| DpnI | GATC | 3 cut(s) | 868, 902, 1058 |
| DpnII | GATC | 3 cut(s) | 866, 900, 1056 |
| EaeI | YGGCCR | 1 cut(s) | 403 |
| Ecl136II | GAGCTC | 1 cut(s) | 779 |
| Eco130I | CCWWGG | 2 cut(s) | 416, 742 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco24I | GRGCYC | 1 cut(s) | 781 |
| Eco32I | GATATC | 1 cut(s) | 622 |
| Eco47I | GGWCC | 4 cut(s) | 7, 268, 280, 734 |
| Eco53kI | GAGCTC | 1 cut(s) | 779 |
| Eco57I | CTGAAG | 1 cut(s) | 153 |
| Eco81I | CCTNAGG | 1 cut(s) | 207 |
| EcoICRI | GAGCTC | 1 cut(s) | 779 |
| EcoO109I | RGGNCCY | 2 cut(s) | 248, 280 |
| EcoRII | CCWGG | 4 cut(s) | 282, 344, 405, 736 |
| EcoRV | GATATC | 1 cut(s) | 622 |
| EcoT14I | CCWWGG | 2 cut(s) | 416, 742 |
| EcoT22I | ATGCAT | 2 cut(s) | 151, 319 |
| EcoT38I | GRGCYC | 1 cut(s) | 781 |
| ErhI | CCWWGG | 2 cut(s) | 416, 742 |
| FaeI | CATG | 9 cut(s) | 153, 321, 515, 653, 746, 785, 858, 1085, 1166 |
| FatI | CATG | 9 cut(s) | 149, 317, 511, 649, 742, 781, 854, 1081, 1162 |
| Fnu4HI | GCNGC | 4 cut(s) | 230, 915, 973, 1159 |
| FokI | GGATG | 3 cut(s) | 125, 326, 395 |
| FriOI | GRGCYC | 1 cut(s) | 781 |
| Fsp4HI | GCNGC | 4 cut(s) | 230, 915, 973, 1159 |
| FspBI | CTAG | 2 cut(s) | 197, 1134 |
| GluI | GCNGC | 4 cut(s) | 230, 915, 973, 1159 |
| HaeIII | GGCC | 4 cut(s) | 249, 259, 405, 741 |
| Hin1I | GRCGYC | 1 cut(s) | 989 |
| Hin1II | CATG | 9 cut(s) | 153, 321, 515, 653, 746, 785, 858, 1085, 1166 |
| HindIII | AAGCTT | 2 cut(s) | 135, 760 |
| HinfI | GANTC | 5 cut(s) | 12, 128, 653, 846, 1078 |
| HphI | GGTGA | 5 cut(s) | 194, 405, 683, 1024, 1111 |
| Hpy166II | GTNNAC | 4 cut(s) | 413, 503, 734, 802 |
| Hpy188I | TCNGA | 3 cut(s) | 133, 603, 987 |
| Hpy188III | TCNNGA | 3 cut(s) | 390, 650, 782 |
| Hpy8I | GTNNAC | 4 cut(s) | 413, 503, 734, 802 |
| Hpy99I | CGWCG | 1 cut(s) | 563 |
| HpyAV | CCTTC | 2 cut(s) | 239, 1025 |
| HpyCH4III | ACNGT | 7 cut(s) | 71, 310, 680, 790, 1003, 1187, 1192 |
| HpyCH4IV | ACGT | 4 cut(s) | 186, 558, 804, 989 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 155 |
| HpyF3I | CTNAG | 4 cut(s) | 207, 261, 763, 879 |
| HpySE526I | ACGT | 4 cut(s) | 186, 558, 804, 989 |
| Hsp92I | GRCGYC | 1 cut(s) | 989 |
| Hsp92II | CATG | 9 cut(s) | 153, 321, 515, 653, 746, 785, 858, 1085, 1166 |
| Kzo9I | GATC | 3 cut(s) | 866, 900, 1056 |
| LmnI | GCTCC | 5 cut(s) | 167, 354, 423, 776, 839 |
| Lsp1109I | GCAGC | 4 cut(s) | 241, 926, 959, 1170 |
| LweI | GCATC | 3 cut(s) | 304, 561, 943 |
| MaeI | CTAG | 2 cut(s) | 197, 1134 |
| MaeII | ACGT | 4 cut(s) | 186, 558, 804, 989 |
| MaeIII | GTNAC | 3 cut(s) | 182, 482, 997 |
| MalI | GATC | 3 cut(s) | 868, 902, 1058 |
| MboI | GATC | 3 cut(s) | 866, 900, 1056 |
| MboII | GAAGA | 5 cut(s) | 482, 693, 910, 1118, 1153 |
| MflI | RGATCY | 1 cut(s) | 866 |
| MhlI | GDGCHC | 3 cut(s) | 332, 781, 1197 |
| MlsI | TGGCCA | 1 cut(s) | 405 |
| MluCI | AATT | 9 cut(s) | 94, 239, 353, 582, 615, 691, 747, 941, 1110 |
| MluNI | TGGCCA | 1 cut(s) | 405 |
| MlyI | GAGTC | 2 cut(s) | 6, 647 |
| MmeI | TCCRAC | 1 cut(s) | 729 |
| MnlI | CCTC | 6 cut(s) | 258, 1003, 1042, 1045, 1132, 1217 |
| Mox20I | TGGCCA | 1 cut(s) | 405 |
| Mph1103I | ATGCAT | 2 cut(s) | 151, 319 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1110 |
| MscI | TGGCCA | 1 cut(s) | 405 |
| MseI | TTAA | 4 cut(s) | 93, 474, 497, 1064 |
| MslI | CAYNNNNRTG | 2 cut(s) | 418, 1100 |
| Msp20I | TGGCCA | 1 cut(s) | 405 |
| MspA1I | CMGCKG | 2 cut(s) | 917, 995 |
| MspR9I | CCNGG | 4 cut(s) | 284, 346, 407, 738 |
| MvaI | CCWGG | 4 cut(s) | 284, 346, 407, 738 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 155 |
| NcoI | CCATGG | 1 cut(s) | 742 |
| NdeII | GATC | 3 cut(s) | 866, 900, 1056 |
| NlaIII | CATG | 9 cut(s) | 153, 321, 515, 653, 746, 785, 858, 1085, 1166 |
| NlaIV | GGNNCC | 4 cut(s) | 269, 300, 350, 1174 |
| NmuCI | GTSAC | 3 cut(s) | 182, 482, 997 |
| NsiI | ATGCAT | 2 cut(s) | 151, 319 |
| OliI | CACNNNNGTG | 1 cut(s) | 418 |
| PagI | TCATGA | 2 cut(s) | 649, 781 |
| PaqCI | CACCTGC | 1 cut(s) | 598 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1110 |
| PfeI | GAWTC | 3 cut(s) | 128, 846, 1078 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 743 |
| PkrI | GCNGC | 4 cut(s) | 231, 916, 974, 1160 |
| PleI | GAGTC | 2 cut(s) | 6, 647 |
| PpsI | GAGTC | 2 cut(s) | 6, 647 |
| Ppu21I | YACGTR | 1 cut(s) | 805 |
| PpuMI | RGGWCCY | 1 cut(s) | 280 |
| PsiI | TTATAA | 1 cut(s) | 458 |
| Psp124BI | GAGCTC | 1 cut(s) | 781 |
| Psp5II | RGGWCCY | 1 cut(s) | 280 |
| Psp6I | CCWGG | 4 cut(s) | 282, 344, 405, 736 |
| PspGI | CCWGG | 4 cut(s) | 282, 344, 405, 736 |
| PspN4I | GGNNCC | 4 cut(s) | 269, 300, 350, 1174 |
| PspPI | GGNCC | 5 cut(s) | 7, 248, 268, 280, 734 |
| PspPPI | RGGWCCY | 1 cut(s) | 280 |
| PstI | CTGCAG | 1 cut(s) | 231 |
| PstNI | CAGNNNCTG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 866 |
| PvuII | CAGCTG | 2 cut(s) | 917, 995 |
| RsaI | GTAC | 4 cut(s) | 68, 189, 829, 1189 |
| RsaNI | GTAC | 4 cut(s) | 67, 188, 828, 1188 |
| RseI | CAYNNNNRTG | 2 cut(s) | 418, 1100 |
| SacI | GAGCTC | 1 cut(s) | 781 |
| SaqAI | TTAA | 4 cut(s) | 93, 474, 497, 1064 |
| SatI | GCNGC | 4 cut(s) | 230, 915, 973, 1159 |
| Sau3AI | GATC | 3 cut(s) | 866, 900, 1056 |
| Sau96I | GGNCC | 5 cut(s) | 7, 248, 268, 280, 734 |
| ScaI | AGTACT | 1 cut(s) | 1189 |
| SchI | GAGTC | 2 cut(s) | 6, 647 |
| ScrFI | CCNGG | 4 cut(s) | 284, 346, 407, 738 |
| SduI | GDGCHC | 3 cut(s) | 332, 781, 1197 |
| SfaNI | GCATC | 3 cut(s) | 304, 561, 943 |
| SfcI | CTRYAG | 1 cut(s) | 227 |
| SinI | GGWCC | 4 cut(s) | 7, 268, 280, 734 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 418, 1100 |
| SpeI | ACTAGT | 1 cut(s) | 196 |
| Sse9I | AATT | 9 cut(s) | 94, 239, 353, 582, 615, 691, 747, 941, 1110 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SspI | AATATT | 1 cut(s) | 646 |
| SspMI | CTAG | 2 cut(s) | 197, 1134 |
| SstI | GAGCTC | 1 cut(s) | 781 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| StyD4I | CCNGG | 4 cut(s) | 282, 344, 405, 736 |
| StyI | CCWWGG | 2 cut(s) | 416, 742 |
| TaaI | ACNGT | 7 cut(s) | 71, 310, 680, 790, 1003, 1187, 1192 |
| TaiI | ACGT | 4 cut(s) | 189, 561, 807, 992 |
| TaqI | TCGA | 3 cut(s) | 237, 561, 1209 |
| TaqII | GACCGA | 1 cut(s) | 24 |
| TasI | AATT | 9 cut(s) | 94, 239, 353, 582, 615, 691, 747, 941, 1110 |
| TatI | WGTACW | 1 cut(s) | 1187 |
| TfiI | GAWTC | 3 cut(s) | 128, 846, 1078 |
| Tru1I | TTAA | 4 cut(s) | 93, 474, 497, 1064 |
| Tru9I | TTAA | 4 cut(s) | 93, 474, 497, 1064 |
| TscAI | CASTG | 2 cut(s) | 76, 554 |
| TseFI | GTSAC | 3 cut(s) | 182, 482, 997 |
| TseI | GCWGC | 4 cut(s) | 229, 914, 972, 1158 |
| Tsp45I | GTSAC | 3 cut(s) | 182, 482, 997 |
| TspDTI | ATGAA | 5 cut(s) | 189, 638, 798, 1070, 1103 |
| TspRI | CASTG | 2 cut(s) | 76, 554 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 743 |
| VpaK11BI | GGWCC | 4 cut(s) | 7, 268, 280, 734 |
| XapI | RAATTY | 2 cut(s) | 239, 1110 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1110 |
| XspI | CTAG | 2 cut(s) | 197, 1134 |
| ZraI | GACGTC | 1 cut(s) | 990 |
| ZrmI | AGTACT | 1 cut(s) | 1189 |
| Zsp2I | ATGCAT | 2 cut(s) | 151, 319 |