Prupe.1G479600_v2.0.a1

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000579
Physical Location & Seq
Reverse (-)
40091042 .. 40094140
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G479600.1

Sequence Viewer

Length: 1236 bp
ATGCAGGACATACTTATTAGTTTTTTCATATTTTGCATTGCTTCATCTCAGTTACTTGGTATTGTGTACAGCAAAACAACATTTGATGTTGTCAAATTTGGTGCTGTTGGAGATGGACAAACTGATGATACCGAAGCTTTTGTAAAAGCATGGACAGCCTTATGTGGAGCAGCTGCAGGTGGTGATGACGTACCAACACTTACTATACCAGGGGGGAAAACATTCTTATTGCAGCCCTCGGAATTTGAAGGTCCCTGCAAATCAAAGAGTGTTCATGTGCAGGTCTCGGGTAATTTGGTGGCACCCAAAACACCCGATGCATGGAAAGTGTGCCCACCACATAGTTGGCTTGTATTTAGAAAAGTGGACAATCTCATAATCGATGGTTCAGGAAAAATCGACGGTCAGGGTTCAGCTTGGTGGGGCGAAGATAGCTCTTTGATAAATGCTCTACACTTCCTCCGATGTGATCATCTTCGATTGAGTGGACTTACTCATATAAACAGCCCAAGATCTCATATTGGTATAAGCACAAGCAATGACGTGGAGATCTCCCATCTTACTATAATTGCACCTGATGAAAGTCCAAACACAGATGGAATTAACGTCACAAACTCTACCTATGTCAATATTCATGACTCTAAAATTGGAACTGGTGATGACTGCATTACAATCATGTCTGGTTCTTCCAATGTTAGGATAGCCAAGATTGCTTGCGGACCAGGTCATGGAATTAGTGTGGGAAGCTTAGGAGCAGATGGGGCTTATGCTGCAGTGGAAAATATATACGTAAGAGATTGTAGTTTTATAGGAACTCAAAATGGAGCAAGAATCAAGACATGGCCGGGTGGATCTGGATATGCTAGGAATATAACCTTTGAGAACATCATACTTACCGCAGCTAAAAACCCCATCATTATTGACCAACAATACTGTAACGGTGCTCACAATTGCCCAAAGAAGGTAACATTTTTTTGTCATACTTGTATCAAAGCTGTGCTGGTGAGCAATGTGAGATTCACTGGTTTTAGAGGAACTTCTGATAATGAGGAGGCCATCAAATTAGACTGCAACCACATTTCGGGTTGTCAAAACATTGAACTGGTGAAAATAAATATCACCTCAACGGTTCCAAGTAAGAAGGTTTATGCAAGTTGCAACAATGCCAAAGGAAATTCCGGCTCTACTGTGCCCACTGTATCTTGCCTCAAGTATCCCACTCGTCCATTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

412

Amino Acids

43.89

Weight (kDa)

6.84

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 167, 271
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 728
AciI CCGC 2 cut(s) 717, 897
AclWI GGATC 1 cut(s) 859
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 3 cut(s) 95, 242, 1174
AfaI GTAC 2 cut(s) 68, 192
AfiI CCNNNNNNNGG 5 cut(s) 321, 696, 728, 961, 1081
AgsI TTSAA 2 cut(s) 248, 1100
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 2 cut(s) 208, 721
AluBI AGCT 7 cut(s) 137, 173, 416, 435, 747, 902, 995
AluI AGCT 7 cut(s) 137, 173, 416, 435, 747, 902, 995
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 2 cut(s) 842, 1053
ApeKI GCWGC 5 cut(s) 170, 173, 232, 770, 899
ApoI RAATTY 3 cut(s) 95, 242, 1174
Asp700I GAANNNNTTC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 251, 719
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 5 cut(s) 194, 668, 1015, 1111, 1117
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 2 cut(s) 251, 719
BaeGI GKGCMC 2 cut(s) 335, 1194
BanI GGYRCC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 946
BbvI GCAGC 5 cut(s) 160, 182, 244, 757, 911
BccI CCATC 7 cut(s) 107, 377, 564, 590, 752, 920, 1064
BciT130I CCWGG 2 cut(s) 210, 723
BciVI GTATCC 1 cut(s) 1224
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 864
BfmI CTRYAG 2 cut(s) 174, 771
BfuAI ACCTGC 2 cut(s) 167, 271
BfuI GTATCC 1 cut(s) 1224
BglII AGATCT 2 cut(s) 512, 549
BisI GCNGC 5 cut(s) 171, 174, 233, 771, 900
BlsI GCNGC 5 cut(s) 172, 175, 234, 772, 901
Bme1390I CCNGG 3 cut(s) 210, 723, 846
Bme18I GGWCC 2 cut(s) 251, 719
BmeT110I CYCGRG 1 cut(s) 286
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 251, 719
BmiI GGNNCC 3 cut(s) 253, 303, 1131
BmrFI CCNGG 3 cut(s) 210, 723, 846
BmsI GCATC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 748
BpuEI CTTGAG 1 cut(s) 1193
BpuMI CCSGG 1 cut(s) 846
Bsa29I ATCGAT 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 209, 237
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 5 cut(s) 321, 696, 728, 961, 1081
Bse1I ACTGG 3 cut(s) 658, 1027, 1107
Bse3DI GCAATG 3 cut(s) 36, 544, 1015
BseBI CCWGG 2 cut(s) 210, 723
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 209, 237
BseLI CCNNNNNNNGG 5 cut(s) 321, 696, 728, 961, 1081
BseMI GCAATG 3 cut(s) 36, 544, 1015
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 658, 1027, 1107
BseRI GAGGAG 1 cut(s) 1064
BseSI GKGCMC 2 cut(s) 335, 1194
BseXI GCAGC 5 cut(s) 160, 182, 244, 757, 911
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 2 cut(s) 844, 1055
BshNI GGYRCC 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 946
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 845, 1179
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 5 cut(s) 321, 696, 728, 961, 1081
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 844, 1055
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 3 cut(s) 335, 946, 1194
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 4 cut(s) 469, 512, 549, 851
BspACI CCGC 2 cut(s) 717, 897
BspANI GGCC 2 cut(s) 844, 1055
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 381
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 3 cut(s) 253, 303, 1131
BspMAI CTGCAG 2 cut(s) 178, 775
BspMI ACCTGC 2 cut(s) 167, 271
BspPI GGATC 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 3 cut(s) 36, 544, 1015
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 3 cut(s) 658, 1027, 1107
BssECI CCNNGG 2 cut(s) 209, 237
BssMI GATC 4 cut(s) 469, 512, 549, 851
Bst2UI CCWGG 2 cut(s) 210, 723
Bst4CI ACNGT 6 cut(s) 404, 935, 941, 1129, 1189, 1198
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 2 cut(s) 48, 748
BstKTI GATC 4 cut(s) 472, 515, 552, 854
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 4 cut(s) 469, 512, 549, 851
BstMWI GCNNNNNNNGC 5 cut(s) 155, 432, 710, 761, 770
BstNI CCWGG 2 cut(s) 210, 723
BstSCI CCNGG 3 cut(s) 208, 721, 844
BstSFI CTRYAG 2 cut(s) 174, 771
BstSLI GKGCMC 2 cut(s) 335, 1194
BstSNI TACGTA 1 cut(s) 790
BstV1I GCAGC 5 cut(s) 160, 182, 244, 757, 911
BstX2I RGATCY 3 cut(s) 512, 549, 851
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 3 cut(s) 512, 549, 851
Bsu15I ATCGAT 1 cut(s) 381
BsuI GTATCC 1 cut(s) 1224
BsuRI GGCC 2 cut(s) 844, 1055
BsuTUI ATCGAT 1 cut(s) 381
BtrI CACGTC 1 cut(s) 544
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 3 cut(s) 780, 1020, 1194
BveI ACCTGC 2 cut(s) 167, 271
Cac8I GCNNGC 1 cut(s) 715
CciI TCATGA 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 251, 719
ClaI ATCGAT 1 cut(s) 381
CsiI ACCWGGT 1 cut(s) 721
Csp6I GTAC 2 cut(s) 67, 191
CviAII CATG 7 cut(s) 150, 275, 321, 635, 676, 728, 840
CviQI GTAC 2 cut(s) 67, 191
DdeI CTNAG 2 cut(s) 48, 748
DpnI GATC 4 cut(s) 471, 514, 551, 853
DpnII GATC 4 cut(s) 469, 512, 549, 851
EaeI YGGCCR 1 cut(s) 842
Eco105I TACGTA 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 251, 719
Eco88I CYCGRG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 208, 721
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 7 cut(s) 153, 278, 324, 638, 679, 731, 843
FaqI GGGAC 1 cut(s) 237
FatI CATG 7 cut(s) 149, 274, 320, 634, 675, 727, 839
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 171, 174, 233, 771, 900
Fsp4HI GCNGC 5 cut(s) 171, 174, 233, 771, 900
FspBI CTAG 1 cut(s) 864
GluI GCNGC 5 cut(s) 171, 174, 233, 771, 900
HaeIII GGCC 2 cut(s) 844, 1055
HapII CCGG 2 cut(s) 845, 1179
Hin1II CATG 7 cut(s) 153, 278, 324, 638, 679, 731, 843
HindIII AAGCTT 2 cut(s) 135, 745
HinfI GANTC 3 cut(s) 638, 831, 1017
HpaII CCGG 2 cut(s) 845, 1179
HphI GGTGA 5 cut(s) 194, 668, 1015, 1111, 1117
Hpy166II GTNNAC 3 cut(s) 67, 367, 488
Hpy188I TCNGA 3 cut(s) 241, 464, 1042
Hpy188III TCNNGA 4 cut(s) 390, 635, 835, 855
Hpy8I GTNNAC 3 cut(s) 67, 367, 488
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 242, 955, 1135
HpyCH4III ACNGT 6 cut(s) 404, 935, 941, 1129, 1189, 1198
HpyCH4IV ACGT 4 cut(s) 189, 543, 606, 789
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 432, 710, 761, 770
HpyF3I CTNAG 2 cut(s) 48, 748
HpySE526I ACGT 4 cut(s) 189, 543, 606, 789
Hsp92II CATG 7 cut(s) 153, 278, 324, 638, 679, 731, 843
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 469, 512, 549, 851
LmnI GCTCC 3 cut(s) 167, 752, 824
Lsp1109I GCAGC 5 cut(s) 160, 182, 244, 757, 911
LweI GCATC 1 cut(s) 307
MabI ACCWGGT 1 cut(s) 721
MaeI CTAG 1 cut(s) 864
MaeII ACGT 4 cut(s) 189, 543, 606, 789
MaeIII GTNAC 4 cut(s) 51, 607, 935, 964
MalI GATC 4 cut(s) 471, 514, 551, 853
MboI GATC 4 cut(s) 469, 512, 549, 851
MboII GAAGA 3 cut(s) 440, 467, 678
MfeI CAATTG 1 cut(s) 949
MflI RGATCY 3 cut(s) 512, 549, 851
MhlI GDGCHC 3 cut(s) 335, 946, 1194
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 7 cut(s) 247, 470, 1025, 1042, 1045, 1132, 1217
Mph1103I ATGCAT 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 221
MseI TTAA 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 845, 1179
MspR9I CCNGG 3 cut(s) 210, 723, 846
MunI CAATTG 1 cut(s) 949
MvaI CCWGG 2 cut(s) 210, 723
MwoI GCNNNNNNNGC 5 cut(s) 155, 432, 710, 761, 770
NciI CCSGG 1 cut(s) 846
NdeII GATC 4 cut(s) 469, 512, 549, 851
NlaIII CATG 7 cut(s) 153, 278, 324, 638, 679, 731, 843
NlaIV GGNNCC 3 cut(s) 253, 303, 1131
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 322
PagI TCATGA 1 cut(s) 634
PaqCI CACCTGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 831, 1017
PflFI GACNNNGTC 1 cut(s) 723
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 5 cut(s) 172, 175, 234, 772, 901
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
Ppu21I YACGTR 1 cut(s) 790
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 208, 721
PspGI CCWGG 2 cut(s) 208, 721
PspN4I GGNNCC 3 cut(s) 253, 303, 1131
PspPI GGNCC 2 cut(s) 251, 719
PspPPI RGGWCCY 1 cut(s) 251
PstI CTGCAG 2 cut(s) 178, 775
PsuI RGATCY 3 cut(s) 512, 549, 851
PsyI GACNNNGTC 1 cut(s) 723
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 68, 192
RsaNI GTAC 2 cut(s) 67, 191
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 5 cut(s) 171, 174, 233, 771, 900
Sau3AI GATC 4 cut(s) 469, 512, 549, 851
Sau96I GGNCC 2 cut(s) 251, 719
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 3 cut(s) 210, 723, 846
SduI GDGCHC 3 cut(s) 335, 946, 1194
SexAI ACCWGGT 1 cut(s) 721
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 174, 771
SinI GGWCC 2 cut(s) 251, 719
SmlI CTYRAG 1 cut(s) 1208
SmoI CTYRAG 1 cut(s) 1208
SnaBI TACGTA 1 cut(s) 790
SsiI CCGC 2 cut(s) 717, 897
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 864
StyD4I CCNGG 3 cut(s) 208, 721, 844
TaaI ACNGT 6 cut(s) 404, 935, 941, 1129, 1189, 1198
TaiI ACGT 4 cut(s) 192, 546, 609, 792
TaqI TCGA 3 cut(s) 381, 399, 478
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 831, 1017
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 3 cut(s) 780, 1027, 1201
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 5 cut(s) 170, 173, 232, 770, 899
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 6 cut(s) 16, 33, 263, 594, 623, 1219
TspRI CASTG 3 cut(s) 780, 1027, 1201
Tth111I GACNNNGTC 1 cut(s) 723
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 251, 719
XapI RAATTY 3 cut(s) 95, 242, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 1 cut(s) 864
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.