Prupe.1G479700_v2.0.a1

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000579
Physical Location & Seq
Reverse (-)
40096819 .. 40099531
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G479700.1

Sequence Viewer

Length: 1173 bp
ATGCAGGACATACTTATTAGCTTTTTCATATTTTGCATTGCTTCATCTCAGTTACTTGGTATTGTGTACAGCAAAACAACATTTGATGTTGTCAAATTTGGTGCTGTTGGAGACGGACAAACTGATGATTCCGAAGCTATTGTAAACGCATGGAAAGCCTTGTGTGGAGCAGCTGCAGCTGGTGATGACGTACCAACACTTACTGTACCAGGGGGGAAAACATTCTTATTGCAACCCTCGGAATTTGAAGGTCCCTGCAAATCAAAGAGTGTTCATATTCAGGTCTCGGGTAATTTGATGGCACCCAAAACGCCCGATGCATGGAAAGTGTGTCCATCATATAGTTGGCTTTCATTTAGAAATGTGGACAATCTCATACTCGATGGTTCAGGAAAAATTGACGGTCAGGGTTCAGCTTGGTGGAGCAAAGCTCTTCAATTCCACCGATGTGATCATCTTCGATTGAGTGGACTTACTCACATAAACAGCCCAAGATCTCATATTGGTATAGGCACAAGCAATGACGTGGATATCTCCCATCTTACTATAATTGCACCTGATGAAAGTCCAAACACTGATGGAATTAACGTCGCAAACTCAACCTATGTCTATATTCATGACTCTAAAATTGGAACTGGTGATGACTGCATTGCAATCAGTTCTGGTGCTTCCAATGTTAGGATCGCCAAGATTGCGTGCGGACCAGGTCATGGAATTAGTGTGGGAAGCCTAGGAGCAAATGGGGCTTATGCTGCAGTGGAAAATGTATACGTGAGAGATTGTAGTTTTAATGGAACTCAAAATGGAGCAAGAATCAAGACATGGCCGGGTGGATCTGGATATGCTAGGAATATAACCTTTGAGAACATCACACTTACCGCGACTAAAAACCCCATCATTATTGACCAACAATACTGCAACGGTGCTCATGATTGCGCAAAGCAGAGCAAAGCTGTGCTGGTGAGCAATGTGAGATTCACTGATTTTAGAGGAACTTGTGGAAATGAGGAGGCTATCAAATTAGACTGCAACCACATTTCGGGTTGTCAAAACATTGAACTGGTGAAAATAAATATCACCTCAACGGTTCCAAGTAAGAAGGTTTATGCAAGTTGCAACAATGCCAAAGGAAATTCCGGCTCTACTGTGCCCACTGTATCTTGCCTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

391

Amino Acids

41.35

Weight (kDa)

6.36

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 937
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 710
AccI GTMKAC 1 cut(s) 768
AccII CGCG 1 cut(s) 881
AciI CCGC 2 cut(s) 699, 879
AclWI GGATC 2 cut(s) 689, 841
AcoI YGGCCR 1 cut(s) 824
AcsI RAATTY 3 cut(s) 95, 242, 1132
AfaI GTAC 3 cut(s) 68, 192, 207
AfiI CCNNNNNNNGG 4 cut(s) 321, 678, 710, 1039
AgsI TTSAA 3 cut(s) 248, 437, 1058
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 2 cut(s) 208, 703
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 7 cut(s) 21, 137, 173, 179, 416, 431, 953
AluI AGCT 7 cut(s) 21, 137, 173, 179, 416, 431, 953
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 2 cut(s) 105, 289
AlwI GGATC 2 cut(s) 689, 841
Ama87I CYCGRG 2 cut(s) 286, 1166
AoxI GGCC 1 cut(s) 824
ApeKI GCWGC 4 cut(s) 170, 173, 176, 752
ApoI RAATTY 3 cut(s) 95, 242, 1132
Asp700I GAANNNNTTC 1 cut(s) 221
AspA2I CCTAGG 1 cut(s) 730
AspLEI GCGC 1 cut(s) 938
AspS9I GGNCC 2 cut(s) 251, 701
AsuC2I CCSGG 1 cut(s) 828
AsuHPI GGTGA 5 cut(s) 194, 650, 973, 1069, 1075
AvaI CYCGRG 2 cut(s) 286, 1166
AvaII GGWCC 2 cut(s) 251, 701
AvrII CCTAGG 1 cut(s) 730
BaeGI GKGCMC 1 cut(s) 1152
BanI GGYRCC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 4 cut(s) 160, 182, 188, 739
BccI CCATC 6 cut(s) 292, 343, 377, 546, 572, 902
BciT130I CCWGG 2 cut(s) 210, 705
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 105, 289
BfaI CTAG 2 cut(s) 731, 846
BfmI CTRYAG 2 cut(s) 174, 753
BglII AGATCT 1 cut(s) 494
BisI GCNGC 4 cut(s) 171, 174, 177, 753
BlnI CCTAGG 1 cut(s) 730
BlsI GCNGC 4 cut(s) 172, 175, 178, 754
Bme1390I CCNGG 3 cut(s) 210, 705, 828
Bme18I GGWCC 2 cut(s) 251, 701
BmeT110I CYCGRG 2 cut(s) 286, 1166
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 251, 701
BmiI GGNNCC 3 cut(s) 253, 303, 1089
BmrFI CCNGG 3 cut(s) 210, 705, 828
BmsI GCATC 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpuMI CCSGG 1 cut(s) 828
BsaAI YACGTR 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 209, 237, 730
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 678, 710, 1039
Bse1I ACTGG 2 cut(s) 640, 1065
Bse3DI GCAATG 4 cut(s) 36, 526, 648, 973
BseBI CCWGG 2 cut(s) 210, 705
BseDI CCNNGG 3 cut(s) 209, 237, 730
BseLI CCNNNNNNNGG 4 cut(s) 321, 678, 710, 1039
BseMI GCAATG 4 cut(s) 36, 526, 648, 973
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 640, 1065
BseRI GAGGAG 1 cut(s) 1022
BseSI GKGCMC 1 cut(s) 1152
BseXI GCAGC 4 cut(s) 160, 182, 188, 739
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 1 cut(s) 826
BshNI GGYRCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 928
BsiHKCI CYCGRG 2 cut(s) 286, 1166
BsiSI CCGG 2 cut(s) 827, 1137
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 4 cut(s) 321, 678, 710, 1039
BsmAI GTCTC 2 cut(s) 105, 289
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 826
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 286, 1166
Bsp1286I GDGCHC 2 cut(s) 928, 1152
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 4 cut(s) 451, 494, 681, 833
BspACI CCGC 2 cut(s) 699, 879
BspANI GGCC 1 cut(s) 826
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 881
BspHI TCATGA 2 cut(s) 616, 928
BspLI GGNNCC 3 cut(s) 253, 303, 1089
BspMAI CTGCAG 2 cut(s) 178, 757
BspPI GGATC 2 cut(s) 689, 841
BspQI GCTCTTC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 4 cut(s) 36, 526, 648, 973
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 2 cut(s) 640, 1065
BssECI CCNNGG 3 cut(s) 209, 237, 730
BssMI GATC 4 cut(s) 451, 494, 681, 833
BssNAI GTATAC 1 cut(s) 769
BssT1I CCWWGG 1 cut(s) 730
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 2 cut(s) 210, 705
Bst4CI ACNGT 6 cut(s) 205, 404, 923, 1087, 1147, 1156
Bst6I CTCTTC 1 cut(s) 438
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 772
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 881
BstHHI GCGC 1 cut(s) 938
BstKTI GATC 4 cut(s) 454, 497, 684, 836
BstMAI GTCTC 2 cut(s) 105, 289
BstMBI GATC 4 cut(s) 451, 494, 681, 833
BstMWI GCNNNNNNNGC 5 cut(s) 155, 176, 692, 743, 752
BstNI CCWGG 2 cut(s) 210, 705
BstSCI CCNGG 3 cut(s) 208, 703, 826
BstSFI CTRYAG 2 cut(s) 174, 753
BstSLI GKGCMC 1 cut(s) 1152
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 4 cut(s) 160, 182, 188, 739
BstX2I RGATCY 2 cut(s) 494, 833
BstYI RGATCY 2 cut(s) 494, 833
BstZ17I GTATAC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 826
BtrI CACGTC 1 cut(s) 526
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 4 cut(s) 573, 762, 978, 1152
Cac8I GCNNGC 1 cut(s) 697
CciI TCATGA 2 cut(s) 616, 928
CfoI GCGC 1 cut(s) 938
Cfr13I GGNCC 2 cut(s) 251, 701
CsiI ACCWGGT 1 cut(s) 703
Csp6I GTAC 3 cut(s) 67, 191, 206
CviAII CATG 6 cut(s) 150, 321, 617, 710, 822, 929
CviQI GTAC 3 cut(s) 67, 191, 206
DdeI CTNAG 1 cut(s) 48
DpnI GATC 4 cut(s) 453, 496, 683, 835
DpnII GATC 4 cut(s) 451, 494, 681, 833
EaeI YGGCCR 1 cut(s) 824
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 730
Eco31I GGTCTC 1 cut(s) 289
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 2 cut(s) 251, 701
Eco88I CYCGRG 2 cut(s) 286, 1166
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 208, 703
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 730
EcoT22I ATGCAT 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 730
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 6 cut(s) 153, 324, 620, 713, 825, 932
FaqI GGGAC 1 cut(s) 237
FatI CATG 6 cut(s) 149, 320, 616, 709, 821, 928
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 4 cut(s) 171, 174, 177, 753
Fsp4HI GCNGC 4 cut(s) 171, 174, 177, 753
FspBI CTAG 2 cut(s) 731, 846
FspI TGCGCA 1 cut(s) 937
GlaI GCGC 1 cut(s) 937
GluI GCNGC 4 cut(s) 171, 174, 177, 753
HaeIII GGCC 1 cut(s) 826
HapII CCGG 2 cut(s) 827, 1137
HhaI GCGC 1 cut(s) 938
Hin1II CATG 6 cut(s) 153, 324, 620, 713, 825, 932
Hin6I GCGC 1 cut(s) 936
HinP1I GCGC 1 cut(s) 936
HinfI GANTC 4 cut(s) 128, 620, 813, 975
HpaII CCGG 2 cut(s) 827, 1137
HphI GGTGA 5 cut(s) 194, 650, 973, 1069, 1075
Hpy166II GTNNAC 5 cut(s) 67, 145, 367, 470, 769
Hpy188I TCNGA 2 cut(s) 133, 241
Hpy188III TCNNGA 5 cut(s) 390, 617, 817, 837, 929
Hpy8I GTNNAC 5 cut(s) 67, 145, 367, 470, 769
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 2 cut(s) 242, 1093
HpyCH4III ACNGT 6 cut(s) 205, 404, 923, 1087, 1147, 1156
HpyCH4IV ACGT 4 cut(s) 189, 525, 588, 771
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 176, 692, 743, 752
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 4 cut(s) 189, 525, 588, 771
Hsp92II CATG 6 cut(s) 153, 324, 620, 713, 825, 932
HspAI GCGC 1 cut(s) 936
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 451, 494, 681, 833
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 4 cut(s) 167, 423, 734, 806
Lsp1109I GCAGC 4 cut(s) 160, 182, 188, 739
LweI GCATC 1 cut(s) 307
MabI ACCWGGT 1 cut(s) 703
MaeI CTAG 2 cut(s) 731, 846
MaeII ACGT 4 cut(s) 189, 525, 588, 771
MaeIII GTNAC 1 cut(s) 51
MalI GATC 4 cut(s) 453, 496, 683, 835
MboI GATC 4 cut(s) 451, 494, 681, 833
MboII GAAGA 2 cut(s) 425, 449
MflI RGATCY 2 cut(s) 494, 833
MhlI GDGCHC 2 cut(s) 928, 1152
MlyI GAGTC 1 cut(s) 614
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 5 cut(s) 247, 983, 1000, 1003, 1090
Mph1103I ATGCAT 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 221
MseI TTAA 2 cut(s) 585, 789
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 2 cut(s) 173, 179
MspI CCGG 2 cut(s) 827, 1137
MspR9I CCNGG 3 cut(s) 210, 705, 828
MvaI CCWGG 2 cut(s) 210, 705
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 5 cut(s) 155, 176, 692, 743, 752
NciI CCSGG 1 cut(s) 828
NdeII GATC 4 cut(s) 451, 494, 681, 833
NlaIII CATG 6 cut(s) 153, 324, 620, 713, 825, 932
NlaIV GGNNCC 3 cut(s) 253, 303, 1089
NsbI TGCGCA 1 cut(s) 937
NsiI ATGCAT 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 447
PaeR7I CTCGAG 1 cut(s) 1166
PagI TCATGA 2 cut(s) 616, 928
PciSI GCTCTTC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 3 cut(s) 128, 813, 975
PflFI GACNNNGTC 1 cut(s) 705
PflMI CCANNNNNTGG 1 cut(s) 710
PkrI GCNGC 4 cut(s) 172, 175, 178, 754
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
Ppu21I YACGTR 1 cut(s) 772
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 208, 703
PspGI CCWGG 2 cut(s) 208, 703
PspN4I GGNNCC 3 cut(s) 253, 303, 1089
PspPI GGNCC 2 cut(s) 251, 701
PspPPI RGGWCCY 1 cut(s) 251
PspXI VCTCGAGB 1 cut(s) 1166
PstI CTGCAG 2 cut(s) 178, 757
PsuI RGATCY 2 cut(s) 494, 833
PsyI GACNNNGTC 1 cut(s) 705
PvuII CAGCTG 2 cut(s) 173, 179
RsaI GTAC 3 cut(s) 68, 192, 207
RsaNI GTAC 3 cut(s) 67, 191, 206
RseI CAYNNNNRTG 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 585, 789
SatI GCNGC 4 cut(s) 171, 174, 177, 753
Sau3AI GATC 4 cut(s) 451, 494, 681, 833
Sau96I GGNCC 2 cut(s) 251, 701
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 3 cut(s) 210, 705, 828
SduI GDGCHC 2 cut(s) 928, 1152
SexAI ACCWGGT 1 cut(s) 703
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 174, 753
Sfr274I CTCGAG 1 cut(s) 1166
SinI GGWCC 2 cut(s) 251, 701
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SsiI CCGC 2 cut(s) 699, 879
SspMI CTAG 2 cut(s) 731, 846
StyD4I CCNGG 3 cut(s) 208, 703, 826
StyI CCWWGG 1 cut(s) 730
TaaI ACNGT 6 cut(s) 205, 404, 923, 1087, 1147, 1156
TaiI ACGT 4 cut(s) 192, 528, 591, 774
TaqI TCGA 3 cut(s) 381, 460, 1167
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 3 cut(s) 128, 813, 975
Tru1I TTAA 2 cut(s) 585, 789
Tru9I TTAA 2 cut(s) 585, 789
TscAI CASTG 4 cut(s) 580, 762, 985, 1159
TseI GCWGC 4 cut(s) 170, 173, 176, 752
TspDTI ATGAA 6 cut(s) 16, 33, 263, 342, 576, 605
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 4 cut(s) 580, 762, 985, 1159
Tth111I GACNNNGTC 1 cut(s) 705
Van91I CCANNNNNTGG 1 cut(s) 710
VpaK11BI GGWCC 2 cut(s) 251, 701
XapI RAATTY 3 cut(s) 95, 242, 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XhoI CTCGAG 1 cut(s) 1166
XmaJI CCTAGG 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 768
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 2 cut(s) 731, 846
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.