Rh2CG399600

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000579
Physical Location & Seq
Reverse (-)
54342735 .. 54383695
40961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG399600.1

Sequence Viewer

Length: 1203 bp
ATGGGAGCTTTGACGGCAAAGCCTGAGCCTCTGTGTTTGGAAGCCTCTCCAAATTCTGGAAATGTATCTGTTAACGTTACTGACTATGGCGCTGTTGGAAATGGTCTTATAGATGATTCTCAGGCTTTCGCAAAAGCATGGAGAGCCTCCTGCCTAGCTACTCAAGCTGATCAAGCAAAGATCGTCATACCTGCTGCAAAAACTTTCCTGTTGCAACCGACAGATTTCAAACTCCGTATGTTGAGTCACTTTGCTAAGAATCGAACATTCAACTACGCACATACAAATCATGCGCCCAACCACAACAATCAAGGGGAGGATGCTTTCAAGCCTGATATTTATGGGGATGTGATAATCATAGAGCGCAAGATTTCTGGAGCTTCAAACGCCACTGTTTTGAAGGATCATCAAGATTATACAAATATGCAGTTGAGGCATAGAAAGCAGTTGAGTGGCTTGATGATTCTGGGGAAAATTGTGGCACCCAAAAATCCAGATGAATGGAAAGGGTGTGTAGAATCTTGGTTATCTTTTGGAAATTTGAGCAACCTCATAATAAATGGAACGGGAGAAATTAATGGCCAAGGTTCACTTTGGTGGAGCAATATTACCACCCAACCTAACAAAGCTCTACACCTTTTCAAATGCAGTAATCTTCAGTTAAGCGGACTCGCACATATTGACAGTCCAAAGGCTCATATTAGCATCAACCGTAGCAATAATGTCACCGTCTCTAATCTTCATATTCGTGCACCTGAAGATAGTCCTAACACGGATGGTATTGACATCTCTGTCTCAACACATGTCAATATTCATGACTCAACAATAGCAACTGGTGTGAATGAAAGTTATCAGACGGTAGAAGAGATACGAGTACGAAATTGTAGTTTCAACGGTACACAAAATGGAGCGAGAATTAAGACATGGCAGGGTGGTTCTGGATATGCTAGGAAGATAACATTTGAACACATAACACTAATAGCCGCGAAGCATCCTATCATCATTGACCAACATTACTGTAATGGAAAGCACGACTGTGAAAATTCGACTCAGGCAGTAGAAGTGAGTGATGTCACATATAGTGATTTTCAAGGAACTTCTTCAAGTGAGGAGGCGATTATGAATATGAACAAGCCAACAAACACTGAAAGCTTTAAGCTTAAGACACTGAATGAAGAAACTGGAGAAGAGATCGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

400

Amino Acids

43.94

Weight (kDa)

6.05

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 165 - 279 7.6e-25 Glycosyl hydrolases family 28
Glyco_hydro_28 PF00295 282 - 388 6.1e-24 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 56
AccII CGCG 1 cut(s) 986
AciI CCGC 2 cut(s) 666, 984
AclI AACGTT 1 cut(s) 75
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 3 cut(s) 52, 538, 1042
AcuI CTGAAG 2 cut(s) 641, 777
AfaI GTAC 2 cut(s) 876, 898
AfiI CCNNNNNNNGG 1 cut(s) 56
AflII CTTAAG 1 cut(s) 1160
AflIII ACRYGT 1 cut(s) 802
AleI CACNNNNGTG 2 cut(s) 595, 1035
AluBI AGCT 7 cut(s) 8, 158, 167, 380, 629, 1152, 1159
AluI AGCT 7 cut(s) 8, 158, 167, 380, 629, 1152, 1159
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 2 cut(s) 736, 799
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 1 cut(s) 411
AoxI GGCC 1 cut(s) 580
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 3 cut(s) 52, 538, 1042
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 1099
AspLEI GCGC 3 cut(s) 92, 295, 366
AsuHPI GGTGA 1 cut(s) 718
BaeGI GKGCMC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 582
BanI GGYRCC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 770
BceAI ACGGC 1 cut(s) 30
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 736, 799
BfaI CTAG 2 cut(s) 155, 948
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 1160
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 2 cut(s) 195, 984
BlsI GCNGC 2 cut(s) 196, 985
BmiI GGNNCC 1 cut(s) 483
BmsI GCATC 3 cut(s) 310, 714, 1000
BpmI CTGGAG 2 cut(s) 396, 1203
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 583
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 838, 1186
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 4 cut(s) 325, 352, 781, 991
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 3 cut(s) 15, 134, 1064
BseNI ACTGG 2 cut(s) 838, 1186
BseRI GAGGAG 1 cut(s) 1124
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 986
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 754
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 736, 799
BsmBI CGTCTC 1 cut(s) 736
BsnI GGCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 754
Bsp143I GATC 4 cut(s) 169, 180, 403, 1191
BspACI CCGC 2 cut(s) 666, 984
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 3 cut(s) 16, 133, 1063
BspFNI CGCG 1 cut(s) 986
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 199
BspPI GGATC 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 1160
BsrI ACTGG 2 cut(s) 838, 1186
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 4 cut(s) 169, 180, 403, 1191
BssT1I CCWWGG 1 cut(s) 583
Bst4CI ACNGT 8 cut(s) 394, 686, 713, 730, 859, 896, 1019, 1037
Bst6I CTCTTC 3 cut(s) 858, 1182, 1191
BstAFI CTTAAG 1 cut(s) 1160
BstDEI CTNAG 4 cut(s) 24, 120, 255, 1050
BstF5I GGATG 4 cut(s) 325, 352, 781, 991
BstFNI CGCG 1 cut(s) 986
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 3 cut(s) 92, 295, 366
BstKTI GATC 4 cut(s) 172, 183, 406, 1194
BstMAI GTCTC 2 cut(s) 736, 799
BstMBI GATC 4 cut(s) 169, 180, 403, 1191
BstMWI GCNNNNNNNGC 7 cut(s) 14, 143, 164, 173, 386, 433, 442
BstNSI RCATGY 1 cut(s) 806
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 1 cut(s) 986
BstV1I GCAGC 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 501
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 4 cut(s) 325, 352, 781, 991
BtsIMutI CAGTG 3 cut(s) 390, 1143, 1166
BveI ACCTGC 1 cut(s) 199
CciI TCATGA 1 cut(s) 814
CfoI GCGC 3 cut(s) 92, 295, 366
Csp6I GTAC 2 cut(s) 875, 897
CviAII CATG 5 cut(s) 138, 290, 803, 815, 924
CviQI GTAC 2 cut(s) 875, 897
DdeI CTNAG 4 cut(s) 24, 120, 255, 1050
DpnI GATC 4 cut(s) 171, 182, 405, 1193
DpnII GATC 4 cut(s) 169, 180, 403, 1191
DrdI GACNNNNNNGTC 1 cut(s) 791
DseDI GACNNNNNNGTC 1 cut(s) 791
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 3 cut(s) 858, 1182, 1191
EarI CTCTTC 3 cut(s) 858, 1182, 1191
Eco130I CCWWGG 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 641, 777
EcoT14I CCWWGG 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 583
Esp3I CGTCTC 1 cut(s) 736
FaeI CATG 5 cut(s) 141, 293, 806, 818, 927
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 5 cut(s) 137, 289, 802, 814, 923
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 195, 984
FokI GGATG 4 cut(s) 332, 359, 788, 978
Fsp4HI GCNGC 2 cut(s) 195, 984
FspBI CTAG 2 cut(s) 155, 948
GlaI GCGC 3 cut(s) 91, 294, 365
GluI GCNGC 2 cut(s) 195, 984
GsuI CTGGAG 2 cut(s) 396, 1203
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 582
HhaI GCGC 3 cut(s) 92, 295, 366
Hin1II CATG 5 cut(s) 141, 293, 806, 818, 927
Hin6I GCGC 3 cut(s) 90, 293, 364
HinP1I GCGC 3 cut(s) 90, 293, 364
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 2 cut(s) 1150, 1157
HinfI GANTC 8 cut(s) 116, 244, 259, 463, 518, 669, 818, 1048
HpaI GTTAAC 1 cut(s) 73
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 4 cut(s) 73, 590, 752, 899
Hpy188I TCNGA 1 cut(s) 855
Hpy188III TCNNGA 6 cut(s) 57, 375, 410, 494, 815, 939
Hpy8I GTNNAC 4 cut(s) 73, 590, 752, 899
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 8 cut(s) 394, 686, 713, 730, 859, 896, 1019, 1037
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 197, 214, 427, 648, 752
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 143, 164, 173, 386, 433, 442
HpyF3I CTNAG 4 cut(s) 24, 120, 255, 1050
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 141, 293, 806, 818, 927
HspAI GCGC 3 cut(s) 90, 293, 364
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 169, 180, 403, 1191
LmnI GCTCC 4 cut(s) 5, 377, 600, 908
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 3 cut(s) 310, 714, 1000
MaeI CTAG 2 cut(s) 155, 948
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 76, 245, 724, 1072
MalI GATC 4 cut(s) 171, 182, 405, 1193
MboI GATC 4 cut(s) 169, 180, 403, 1191
MboII GAAGA 8 cut(s) 647, 731, 770, 875, 964, 1092, 1187, 1199
MhlI GDGCHC 1 cut(s) 754
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 7 cut(s) 52, 474, 538, 573, 880, 915, 1042
MluNI TGGCCA 1 cut(s) 582
MlyI GAGTC 4 cut(s) 253, 663, 812, 1042
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 8 cut(s) 39, 55, 157, 310, 426, 560, 1102, 1105
Mox20I TGGCCA 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 1099
MscI TGGCCA 1 cut(s) 582
MseI TTAA 6 cut(s) 72, 576, 662, 918, 1155, 1161
MslI CAYNNNNRTG 3 cut(s) 595, 747, 1035
Msp20I TGGCCA 1 cut(s) 582
MspCI CTTAAG 1 cut(s) 1160
MvnI CGCG 1 cut(s) 986
MwoI GCNNNNNNNGC 7 cut(s) 14, 143, 164, 173, 386, 433, 442
NdeII GATC 4 cut(s) 169, 180, 403, 1191
NlaIII CATG 5 cut(s) 141, 293, 806, 818, 927
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 3 cut(s) 245, 724, 1072
NspI RCATGY 1 cut(s) 806
OliI CACNNNNGTG 2 cut(s) 595, 1035
PagI TCATGA 1 cut(s) 814
PciI ACATGT 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 1099
PfeI GAWTC 4 cut(s) 116, 259, 463, 518
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 2 cut(s) 196, 985
PleI GAGTC 4 cut(s) 252, 663, 812, 1042
PpsI GAGTC 4 cut(s) 252, 663, 812, 1042
PscI ACATGT 1 cut(s) 802
PshBI ATTAAT 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 483
RsaI GTAC 2 cut(s) 876, 898
RsaNI GTAC 2 cut(s) 875, 897
RseI CAYNNNNRTG 3 cut(s) 595, 747, 1035
SaqAI TTAA 6 cut(s) 72, 576, 662, 918, 1155, 1161
SatI GCNGC 2 cut(s) 195, 984
Sau3AI GATC 4 cut(s) 169, 180, 403, 1191
SchI GAGTC 4 cut(s) 253, 663, 812, 1042
SduI GDGCHC 1 cut(s) 754
SfaNI GCATC 3 cut(s) 310, 714, 1000
SmiMI CAYNNNNRTG 3 cut(s) 595, 747, 1035
SmlI CTYRAG 2 cut(s) 162, 1160
SmoI CTYRAG 2 cut(s) 162, 1160
Sse9I AATT 7 cut(s) 52, 474, 538, 573, 880, 915, 1042
SsiI CCGC 2 cut(s) 666, 984
SspI AATATT 2 cut(s) 607, 811
SspMI CTAG 2 cut(s) 155, 948
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 8 cut(s) 394, 686, 713, 730, 859, 896, 1019, 1037
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 262, 1046, 1194
TasI AATT 7 cut(s) 52, 474, 538, 573, 880, 915, 1042
TauI GCSGC 1 cut(s) 986
TfiI GAWTC 4 cut(s) 116, 259, 463, 518
Tru1I TTAA 6 cut(s) 72, 576, 662, 918, 1155, 1161
Tru9I TTAA 6 cut(s) 72, 576, 662, 918, 1155, 1161
TscAI CASTG 3 cut(s) 397, 1150, 1173
TseFI GTSAC 3 cut(s) 245, 724, 1072
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 3 cut(s) 245, 724, 1072
TspDTI ATGAA 7 cut(s) 513, 731, 803, 858, 1136, 1142, 1188
TspGWI ACGGA 2 cut(s) 224, 788
TspRI CASTG 3 cut(s) 397, 1150, 1173
Van91I CCANNNNNTGG 1 cut(s) 56
Vha464I CTTAAG 1 cut(s) 1160
VneI GTGCAC 1 cut(s) 750
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 3 cut(s) 52, 538, 1042
XceI RCATGY 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 1099
XspI CTAG 2 cut(s) 155, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.