Rorug03G0024300

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000579
Physical Location & Seq
Forward (+)
1940673 .. 1941988
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0024300.1

Sequence Viewer

Length: 903 bp
ATGGAGTTTCAGTTCCAGCTGCAGAAACAGATTTCATTTCCGGCGGCGGCTCAATCACATAGAGCTTCAGGCATTCCAATAAGCAGTAAAGGCAATAAGTTGAAGGGAGGTAGAAATAGAAGCAACAACACCAACAAGTTTGTTGGGGTGAGACAGAGACCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACGCAAAAGATAAGGATGTGGCTTGGAACCTTTGAAACTGCTGAAGAGGCTGCTCGAGCTTACGACGAAGCTGCTTGCCTTCTTCGTGGCAACAATACTCGAACCAACTTCATCACACATGTCTCTTTGGATTCCCCTCTTGCTTCTCGAATCCAAAATCTCCTCAACACCAAAAAGCCAGGACCCAACTGTAAACAACAAATCCAAATGACTAGTAGTACTTCTTCTAGTACTGCCTCTCAATCCCCCACAGCTAAAAATACTAGTAGCACAAGTACTAGCGCTAGTTCCAGTAGCAAGAGTTGTCTTTCGAGTGAGGTATCGAATCAAGAGTCGTCTCATCATCAATTTTCTGATGATGTATACAAGCCAGACTTGAGTAACTGCAATCAGCTCCCTTTTGATCAGTTGAGTACTAGCACTACTTCTTCTTCAAATTCTTATCAATCCAATATTTCTTGGGTTGATGGATTCTCATTTGCTCAGCAAATGTTTGCGACACCAAAAGATGAAGCTGCTCTGTCGAGCGAATTAATTTCCGCTGATGAACGTGGTGATTCGGATGAGTTGTTGGAATTTGAAAGGATGAAAGTCGAAAGACAGATATCAGCTTCATTGTATGCTATGAATGGTGTGCAAGAGTATATGGACACAGTTCATGATGCGAATGAAGCTCTTTGGGATCTTCAACCATTCTGTGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

300

Amino Acids

33.07

Weight (kDa)

6.0

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 46 - 95 1.9e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 3 cut(s) 44, 47, 735
AclWI GGATC 1 cut(s) 885
AcsI RAATTY 2 cut(s) 631, 770
AcuI CTGAAG 3 cut(s) 51, 147, 258
AfaI GTAC 4 cut(s) 415, 427, 472, 610
AfeI AGCGCT 1 cut(s) 478
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 5 cut(s) 103, 230, 630, 776, 884
AhlI ACTAGT 2 cut(s) 407, 458
AjnI CCWGG 1 cut(s) 373
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw26I GTCTC 4 cut(s) 145, 151, 322, 537
AlwI GGATC 1 cut(s) 885
Ama87I CYCGRG 1 cut(s) 249
Aor51HI AGCGCT 1 cut(s) 478
ApeKI GCWGC 4 cut(s) 19, 245, 266, 710
ApoI RAATTY 2 cut(s) 631, 770
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AseI ATTAAT 1 cut(s) 728
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 160, 761
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 403, 435
BbvI GCAGC 4 cut(s) 6, 232, 253, 697
BccI CCATC 2 cut(s) 165, 656
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 4 cut(s) 145, 151, 322, 537
BcuI ACTAGT 2 cut(s) 407, 458
BfaI CTAG 6 cut(s) 408, 423, 459, 474, 480, 612
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 480
BisI GCNGC 6 cut(s) 20, 45, 48, 246, 267, 711
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 6 cut(s) 21, 46, 49, 247, 268, 712
BmcAI AGTACT 4 cut(s) 415, 427, 472, 610
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 223, 379
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 847
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 592
BsaI GGTCTC 1 cut(s) 151
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 486
BseBI CCWGG 1 cut(s) 375
BseGI GGATG 3 cut(s) 216, 763, 786
BseMII CTCAG 2 cut(s) 171, 692
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 4 cut(s) 6, 232, 253, 697
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 4 cut(s) 145, 151, 322, 537
BsmBI CGTCTC 1 cut(s) 537
BsmI GAATGC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 3 cut(s) 183, 598, 877
Bsp1720I GCTNAGC 1 cut(s) 678
BspACI CCGC 3 cut(s) 44, 47, 735
BspCNI CTCAG 2 cut(s) 172, 691
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 223, 379
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 885
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 486
BssMI GATC 3 cut(s) 183, 598, 877
BssNAI GTATAC 1 cut(s) 559
Bst1107I GTATAC 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 386, 850
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 180, 678
BstF5I GGATG 3 cut(s) 216, 763, 786
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 3 cut(s) 186, 601, 880
BstMAI GTCTC 4 cut(s) 145, 151, 322, 537
BstMBI GATC 3 cut(s) 183, 598, 877
BstMWI GCNNNNNNNGC 4 cut(s) 90, 242, 251, 866
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 4 cut(s) 6, 232, 253, 697
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BstZ17I GTATAC 1 cut(s) 559
BtsCI GGATG 3 cut(s) 216, 763, 786
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 1 cut(s) 853
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 4 cut(s) 414, 426, 471, 609
CviAII CATG 2 cut(s) 314, 854
CviQI GTAC 4 cut(s) 414, 426, 471, 609
DdeI CTNAG 2 cut(s) 180, 678
DpnI GATC 3 cut(s) 185, 600, 879
DpnII GATC 3 cut(s) 183, 598, 877
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 151
Eco32I GATATC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 377
Eco47III AGCGCT 1 cut(s) 478
Eco57I CTGAAG 3 cut(s) 51, 147, 258
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 801
Esp3I CGTCTC 1 cut(s) 537
FaeI CATG 2 cut(s) 317, 857
FaiI YATR 8 cut(s) 60, 315, 559, 816, 821, 840, 842, 855
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FatI CATG 2 cut(s) 313, 853
FbaI TGATCA 1 cut(s) 598
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 6 cut(s) 20, 45, 48, 246, 267, 711
FokI GGATG 3 cut(s) 223, 770, 793
Fsp4HI GCNGC 6 cut(s) 20, 45, 48, 246, 267, 711
FspBI CTAG 6 cut(s) 408, 423, 459, 474, 480, 612
GlaI GCGC 1 cut(s) 478
GluI GCNGC 6 cut(s) 20, 45, 48, 246, 267, 711
HaeII RGCGCY 1 cut(s) 480
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 479
Hin1II CATG 2 cut(s) 317, 857
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 6 cut(s) 326, 345, 520, 527, 666, 752
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 160, 761
Hpy166II GTNNAC 2 cut(s) 389, 559
Hpy188I TCNGA 2 cut(s) 550, 757
Hpy188III TCNNGA 3 cut(s) 342, 524, 854
Hpy8I GTNNAC 2 cut(s) 389, 559
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 97, 171, 284
HpyCH4III ACNGT 2 cut(s) 386, 850
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 3 cut(s) 22, 582, 832
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 242, 251, 866
HpyF3I CTNAG 2 cut(s) 180, 678
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 2 cut(s) 317, 857
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 3 cut(s) 183, 598, 877
LmnI GCTCC 1 cut(s) 594
LpnPI CCDG 8 cut(s) 29, 54, 54, 150, 360, 387, 499, 579
Lsp1109I GCAGC 4 cut(s) 6, 232, 253, 697
LweI GCATC 1 cut(s) 847
MaeI CTAG 6 cut(s) 408, 423, 459, 474, 480, 612
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 1 cut(s) 575
MalI GATC 3 cut(s) 185, 600, 879
MboI GATC 3 cut(s) 183, 598, 877
MboII GAAGA 6 cut(s) 251, 269, 411, 615, 618, 872
MflI RGATCY 1 cut(s) 877
MluCI AATT 5 cut(s) 542, 631, 725, 729, 770
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 747
MnlI CCTC 6 cut(s) 101, 235, 342, 368, 442, 505
MseI TTAA 1 cut(s) 728
MspA1I CMGCKG 2 cut(s) 19, 737
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 4 cut(s) 90, 242, 251, 866
NdeII GATC 3 cut(s) 183, 598, 877
NlaIII CATG 2 cut(s) 317, 857
NlaIV GGNNCC 2 cut(s) 223, 379
NspI RCATGY 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 249
PagI TCATGA 1 cut(s) 853
PciI ACATGT 1 cut(s) 313
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 5 cut(s) 326, 345, 520, 666, 752
PkrI GCNGC 6 cut(s) 21, 46, 49, 247, 268, 712
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 377
PscI ACATGT 1 cut(s) 313
PshBI ATTAAT 1 cut(s) 728
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 223, 379
PspPI GGNCC 1 cut(s) 377
PspPPI RGGWCCY 1 cut(s) 377
PspXI VCTCGAGB 1 cut(s) 249
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 877
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 4 cut(s) 415, 427, 472, 610
RsaNI GTAC 4 cut(s) 414, 426, 471, 609
SaqAI TTAA 1 cut(s) 728
SatI GCNGC 6 cut(s) 20, 45, 48, 246, 267, 711
Sau3AI GATC 3 cut(s) 183, 598, 877
Sau96I GGNCC 1 cut(s) 377
ScaI AGTACT 4 cut(s) 415, 427, 472, 610
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 375
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 249, 571
SmoI CTYRAG 2 cut(s) 249, 571
SpeI ACTAGT 2 cut(s) 407, 458
Sse9I AATT 5 cut(s) 542, 631, 725, 729, 770
SsiI CCGC 3 cut(s) 44, 47, 735
SspI AATATT 1 cut(s) 649
SspMI CTAG 6 cut(s) 408, 423, 459, 474, 480, 612
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 386, 850
TaiI ACGT 1 cut(s) 748
TaqI TCGA 7 cut(s) 250, 295, 343, 506, 518, 719, 789
TasI AATT 5 cut(s) 542, 631, 725, 729, 770
TatI WGTACW 4 cut(s) 413, 425, 470, 608
TauI GCSGC 2 cut(s) 47, 50
TfiI GAWTC 5 cut(s) 326, 345, 520, 666, 752
Tru1I TTAA 1 cut(s) 728
Tru9I TTAA 1 cut(s) 728
TseI GCWGC 4 cut(s) 19, 245, 266, 710
TspDTI ATGAA 9 cut(s) 24, 295, 720, 756, 797, 798, 836, 842, 879
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 2 cut(s) 631, 770
XceI RCATGY 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 6 cut(s) 408, 423, 459, 474, 480, 612
ZrmI AGTACT 4 cut(s) 415, 427, 472, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.