Prupe.3G043600_v2.0.a1

Polygalacturonase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000579
Physical Location & Seq
Forward (+)
3104399 .. 3105332
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G043600.1

Sequence Viewer

Length: 540 bp
ATGGATACATGGAAAGGGTGTGATGATTGGCTCCAATTTTTGAATGTGGGCAATCTCTTGATCGATGGTTCAGGAGAAAATGACGGCGATGACTGTATAGCCATCAATGGTGGCTGCTCCGATCTCAATATCGCCAACATCGAGTGCGGGCCAGGCCATGGTATAAGGTACGGCGGATCGGGGTATGCTAGGAACATAACCTTTGAGAAGATCACACTCGATGCAACTAAAAATCCTATCATCATTGACCAGTTTTATTGTGACCGTGATCACGACTGCAAAAGTCAGCCCTCGGCTTTGTCGGTGGATTATGTGAAGTACATTGATTTTGAAGGAACTTCTGCGAGTGAGGAGGCGATCAAGTTAGATTGTGACCAGAATTCAGGTTGCCACAACATTATAATGGACTGCATCAATATCACTTCTGCGGTTCTTGGCAAGAAGATTTATGCCTCCTGCAATAATGATATTGGAACTTCCCTTGGCACTACAATGGGAACCAGGAGTGGCAGATATGTACTTCACATCTGGAGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

180

Amino Acids

19.51

Weight (kDa)

4.48

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 3 cut(s) 147, 174, 428
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 3 cut(s) 170, 320, 519
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 43, 332
AjnI CCWGG 2 cut(s) 151, 500
AluBI AGCT 1 cut(s) 534
AluI AGCT 1 cut(s) 534
AlwI GGATC 1 cut(s) 184
AoxI GGCC 2 cut(s) 149, 154
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 101
BccI CCATC 2 cut(s) 59, 110
BceAI ACGGC 2 cut(s) 100, 187
BciT130I CCWGG 2 cut(s) 153, 502
BclI TGATCA 1 cut(s) 268
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 153, 502
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 32, 499
BmrFI CCNGG 2 cut(s) 153, 502
BmsI GCATC 2 cut(s) 211, 420
Bsa29I ATCGAT 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 157, 291, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 153, 502
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 157, 291, 481
BseLI CCNNNNNNNGG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 2 cut(s) 151, 156
BshVI ATCGAT 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 158
BsnI GGCC 2 cut(s) 151, 156
Bsp143I GATC 6 cut(s) 60, 121, 176, 210, 268, 357
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 3 cut(s) 147, 174, 428
BspANI GGCC 2 cut(s) 151, 156
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 32, 499
BspPI GGATC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 157, 291, 481
BssMI GATC 6 cut(s) 60, 121, 176, 210, 268, 357
BssT1I CCWWGG 2 cut(s) 157, 481
Bst2UI CCWGG 2 cut(s) 153, 502
Bst4CI ACNGT 2 cut(s) 95, 266
BstC8I GCNNGC 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 157
BstKTI GATC 6 cut(s) 63, 124, 179, 213, 271, 360
BstMBI GATC 6 cut(s) 60, 121, 176, 210, 268, 357
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 153, 502
BstSCI CCNGG 2 cut(s) 151, 500
BstV1I GCAGC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 2 cut(s) 151, 156
BsuTUI ATCGAT 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 3 cut(s) 169, 319, 518
CviAII CATG 2 cut(s) 9, 158
CviJI RGCY 8 cut(s) 31, 101, 114, 151, 156, 289, 296, 534
CviKI_1 RGCY 8 cut(s) 31, 101, 114, 151, 156, 289, 296, 534
CviQI GTAC 3 cut(s) 169, 319, 518
DpnI GATC 6 cut(s) 62, 123, 178, 212, 270, 359
DpnII GATC 6 cut(s) 60, 121, 176, 210, 268, 357
EciI GGCGGA 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 157, 481
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 151, 500
EcoT14I CCWWGG 2 cut(s) 157, 481
ErhI CCWWGG 2 cut(s) 157, 481
FaeI CATG 2 cut(s) 12, 161
FatI CATG 2 cut(s) 8, 157
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 2 cut(s) 151, 156
Hin1II CATG 2 cut(s) 12, 161
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 4 cut(s) 58, 72, 272, 529
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 2 cut(s) 95, 266
HpyCH4V TGCA 4 cut(s) 224, 279, 411, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 12, 161
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 6 cut(s) 60, 121, 176, 210, 268, 357
LmnI GCTCC 3 cut(s) 36, 122, 531
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 211, 420
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 260, 371
MalI GATC 6 cut(s) 62, 123, 178, 212, 270, 359
MboI GATC 6 cut(s) 60, 121, 176, 210, 268, 357
MboII GAAGA 2 cut(s) 220, 454
MluCI AATT 2 cut(s) 35, 379
MnlI CCTC 4 cut(s) 301, 343, 346, 463
MslI CAYNNNNRTG 2 cut(s) 401, 491
MspR9I CCNGG 2 cut(s) 153, 502
MvaI CCWGG 2 cut(s) 153, 502
MwoI GCNNNNNNNGC 1 cut(s) 153
NcoI CCATGG 1 cut(s) 157
NdeII GATC 6 cut(s) 60, 121, 176, 210, 268, 357
NlaIII CATG 2 cut(s) 12, 161
NlaIV GGNNCC 2 cut(s) 32, 499
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 260, 371
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 151, 500
PspGI CCWGG 2 cut(s) 151, 500
PspN4I GGNNCC 2 cut(s) 32, 499
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 3 cut(s) 170, 320, 519
RsaNI GTAC 3 cut(s) 169, 319, 518
RseI CAYNNNNRTG 2 cut(s) 401, 491
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 6 cut(s) 60, 121, 176, 210, 268, 357
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 153, 502
SetI ASST 4 cut(s) 170, 203, 388, 536
SfaNI GCATC 2 cut(s) 211, 420
SmiMI CAYNNNNRTG 2 cut(s) 401, 491
Sse9I AATT 2 cut(s) 35, 379
SsiI CCGC 3 cut(s) 147, 174, 428
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 151, 500
StyI CCWWGG 2 cut(s) 157, 481
TaaI ACNGT 2 cut(s) 95, 266
TaqI TCGA 3 cut(s) 63, 141, 219
TasI AATT 2 cut(s) 35, 379
TatI WGTACW 2 cut(s) 318, 517
TseFI GTSAC 2 cut(s) 260, 371
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 2 cut(s) 260, 371
Van91I CCANNNNNTGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 379
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.