Rorug06G0278700

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000579
Physical Location & Seq
Reverse (-)
42616512 .. 42618196
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0278700.1

Sequence Viewer

Length: 363 bp
ATGTTCTCAAGTGATGAATCTGTCCCCCACCTCGTCTTTCCTGGGAAAAGTTTGAAAAAGGAAATGACCTCGAATTGTACGGCAAAGGATGTAGATGCATTTCTTGATGATCTCTCTGGTTCAAGGCGAAAGGTAAGGGAGAAAAACTTCACCGGGTTATGCGAAACAAAGAGCATGTTTGTTGTAAACGACATTTTCCCAGGGCCGGAGATACGAGTTCATAAAGGGGATACGGTCTATGTAAATGTTCATAATCAAGGATATTATGGTCTCACTATTCACTGGCATGGAATAATGCAATTAAGAAATCCATGGTCATATGGTCCTGAGTATATCACAGTGTCCAATCCAACCAGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

6.96

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 45 - 113 5e-18 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000579)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32370 AT4G32375 AT4G32380 AT4G32380
fragaria_vesca FvH4_2g29242 FvH4_2g29270 FvH4_4g07180 FvH4_4g07190 FvH4_6g32320 FvH4_6g35100
malus_domestica MD03G1260700.v1.1 MD03G1260800.v1.1 MD09G1203400.v1.1 MD15G1065500.v1.1 MD15G1124200.v1.1 MD15G1124300.v1.1
prunus_persica Prupe.1G247300_v2.0.a1 Prupe.1G247300_v2.0.a1 Prupe.1G479600_v2.0.a1 Prupe.1G479700_v2.0.a1 Prupe.3G043600_v2.0.a1 Prupe.4G130600_v2.0.a1 Prupe.7G064200_v2.0.a1
pyrus_communis pycom03g20830 pycom15g06200
rosa_chinensis RchiOBHm_Chr2g0140421 RchiOBHm_Chr2g0146281 RchiOBHm_Chr3g0458021 RchiOBHm_Chr3g0481551 RchiOBHm_Chr4g0399361 RchiOBHm_Chr4g0399381 RchiOBHm_Chr4g0399391 RchiOBHm_Chr4g0399401 RchiOBHm_Chr4g0399411 RchiOBHm_Chr4g0399471
rosa_laevigata RLG00000009265 RLG00000009272 RLG00000011536 RLG00000011537 RLG00000019863 RLG00000020193 RLG00000023386
rosa_multiflora Rmu_sc0000384.1_g000011 Rmu_sc0002800.1_g000011 Rmu_sc0002800.1_g000012 Rmu_sc0017309.1_g000001 Rmu_sc0022824.1_g000003
rosa_roxburghii Rroxscaffold_153G00436780 Rroxscaffold_2G00100180 Rroxscaffold_5G00344320 Rroxscaffold_5G00344370 Rroxscaffold_6G00400330 Rroxscaffold_6G00421350 Rroxscaffold_7G00169940 Rroxscaffold_7G00169950
rosa_rugosa Rorug02G0362600 Rorug02G0394100 Rorug03G0024300 Rorug03G0192500 Rorug04G0016900 Rorug04G0017100 Rorug06G0278700
rosa_samantha Rh2CG399600 Rh2CG437200 Rh3AG084800 Rh3BG087600 Rh3CG088100 Rh3DG088500 Rh3DG270800 Rh4BG091900 Rh4BG092300 Rh5AG287300 Rh6DG389600
rosa_wichuraiana Rw0G012400 Rw2G033880 Rw2G036760 Rw3G007220 Rw3G021790 Rw4G007750 Rw4G007770 Rw4G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 2 cut(s) 55, 123
AjnI CCWGG 3 cut(s) 40, 199, 353
Alw26I GTCTC 1 cut(s) 275
AoxI GGCC 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 203, 323
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 42, 201, 355
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 275
BfuI GTATCC 1 cut(s) 223
Bme1390I CCNGG 4 cut(s) 42, 154, 201, 355
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 203, 323
BmrFI CCNGG 4 cut(s) 42, 154, 201, 355
BmsI GCATC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 5 cut(s) 41, 199, 200, 311, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 3 cut(s) 42, 201, 355
BseDI CCNNGG 5 cut(s) 41, 199, 200, 311, 354
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 287
BshFI GGCC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 153, 206
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 205
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 311
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 41, 199, 200, 311, 354
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 3 cut(s) 42, 201, 355
Bst4CI ACNGT 2 cut(s) 235, 340
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 3 cut(s) 42, 201, 355
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 4 cut(s) 40, 152, 199, 353
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 280, 345
Cfr13I GGNCC 2 cut(s) 203, 323
Csp6I GTAC 1 cut(s) 78
CviAII CATG 3 cut(s) 175, 287, 312
CviJI RGCY 1 cut(s) 205
CviKI_1 RGCY 1 cut(s) 205
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 327
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 323
EcoRII CCWGG 3 cut(s) 40, 199, 353
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 3 cut(s) 178, 290, 315
FaqI GGGAC 1 cut(s) 8
FatI CATG 3 cut(s) 174, 286, 311
FauNDI CATATG 1 cut(s) 319
FokI GGATG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 153, 206
Hin1II CATG 3 cut(s) 178, 290, 315
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 153, 206
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 104, 326
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 235, 340
HpyCH4V TGCA 2 cut(s) 98, 298
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 3 cut(s) 178, 290, 315
Kzo9I GATC 1 cut(s) 109
LweI GCATC 1 cut(s) 85
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MluCI AATT 2 cut(s) 73, 299
MnlI CCTC 2 cut(s) 41, 79
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 2 cut(s) 153, 206
MspR9I CCNGG 4 cut(s) 42, 154, 201, 355
MvaI CCWGG 3 cut(s) 42, 201, 355
NciI CCSGG 1 cut(s) 154
NcoI CCATGG 1 cut(s) 311
NdeI CATATG 1 cut(s) 319
NdeII GATC 1 cut(s) 109
NlaIII CATG 3 cut(s) 178, 290, 315
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 178
PasI CCCWGGG 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 40, 199, 353
PspGI CCWGG 3 cut(s) 40, 199, 353
PspPI GGNCC 2 cut(s) 203, 323
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 203, 323
ScrFI CCNGG 4 cut(s) 42, 154, 201, 355
SetI ASST 3 cut(s) 33, 71, 135
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 73, 299
StyD4I CCNGG 4 cut(s) 40, 152, 199, 353
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 235, 340
TaqI TCGA 1 cut(s) 71
TasI AATT 2 cut(s) 73, 299
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 287, 345
TspDTI ATGAA 3 cut(s) 30, 209, 239
TspRI CASTG 2 cut(s) 287, 345
VpaK11BI GGWCC 1 cut(s) 323
XceI RCATGY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.